identifier: IG_72815.gnm1.ZDWF

provenance: ""

source: "https://knowpulse.usask.ca/data_files/assemblies/Ler.1DRT.zip"

synopsis: "Genome assembly for Lens ervoides IG 72815 version 1"

scientific_name: Lens ervoides

taxid: 41257

bioproject: 

scientific_name_abbrev: lener

genotype:
  - IG_72815

chromosome_prefix: Ler.1DRT.Chr

supercontig_prefix: Ler.1DRT.unitig

description: "This IG 72815 ASM Lens ervoides genome assembly was constructed with long-read data (52x Oxford nanopore reads). The contiguity of the assembly was further validated and improved using HiC data and a genetic map (LR-66; L1-02-827 x IG 72815 intraspecific RIL). The finished assembly is 2.87 Gb arranged in 7 pseudo-molecules and 1,134 unplaced unitigs."

genbank_accession: 

local_file_creation_date: "2022-10-05"

publication_doi: 10.1101/2021.07.23.453237

dataset_release_date: "2022-10-05"

publication_title: "Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species."

contributors: "Larissa Ramsay, Chu Shin Koh, Sateesh Kagale, Dongying Gao, Sukhjiwan Kaur, Teketel Haile, Tadesse S. Gela, Li-An Chen, Zhe Cao, David J. Konkin, Helena Toegelová, Jaroslav Doležel, Benjamin D. Rosen, Robert Stonehouse, Jodi L. Humann, Dorrie Main, Clarice J.  Coyne, Rebecca J. McGee, Douglas R. Cook10, R. Varma Penmetsa10, Albert Vandenberg, Crystal Chan, Sabine Banniza, David Edwards, Philipp E. Bayer, Jacqueline Batley, Sripada M. Udupa, Kirstin E. Bett"

data_curators: Andrew Farmer

public_access_level: public

license: Open

keywords: Wild Lentil, Lens ervoides, genome

citation: "Ramsay L, Koh CS, Kagale S, Gao D, Kaur S, Haile T, Gela TS, Chen LA, Cao Z, Konkin DJ, Toegelová H, Doležel J, Rosen BD, Stonehouse R, Humann JL, Main D, Coyne CJ, McGee RJ, Cook DR, Penmetsa RV, Vandenberg A, Chan C, Banniza S, Edwards D, Bayer PE, Batley J, Udupa SM, Bett KE. Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species. bioRxiv. 2021 Jul 24."