--- file_transformation: # transcription start region (Sequence Ontology transcription_start_cluster), Wm82.gnm4 cat original/TSR_annotated.V4.gff3 | perl -pe 's/^Gm(\d+)/glyma.Wm82.gnm4.Gm$1/; s/^scaffold_(\d+)/glyma.Wm82.gnm4.scaffold_$1/; s/^Gm\d+_scaffold_(\d+)/glyma.Wm82.gnm4.scaffold_$1/; s/TSR/transcription_start_cluster/; s/.Wm82.a4.v1//' > Wm82.gnm4.trnsc.Wang_Duan_2024/glyma.Wm82.gnm4.trnsc.Wang_Duan_2024.tsr.gff3 # transcription start site (Sequence Ontology TSS), Wm82.gnm4 cat original/TSS_annotated.V4.gff3 | perl -pe 's/^Gm(\d+)/glyma.Wm82.gnm4.Gm$1/; s/^scaffold_(\d+)/glyma.Wm82.gnm4.scaffold_$1/; s/^Gm\d+_scaffold_(\d+)/glyma.Wm82.gnm4.scaffold_$1/; s/.Wm82.a4.v1//' > Wm82.gnm4.trnsc.Wang_Duan_2024/glyma.Wm82.gnm4.trnsc.Wang_Duan_2024.tss.gff3 changes: - 2024-07-04 Initial preparation for datastore.