---
identifier: Wm82.gnm4.atlas_ctACRs_motifs.Zhang_Schmitz_2024

provenance: "The files in this directory originated from the lab of Dr. Bob Schmitz, Univeristy of Georgia. Files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the SoyBase and LegumeInfo projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the SoyBase and LegumeInfo projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory."

source: "http://soybase.org"

synopsis: The motifs identified in the accessible chromatin regions (ACRs), as bed files with motif signatures per feature, for Glycine max accession Williams 82 genome assembly 4

scientific_name: Glycine max

taxid: 3847

bioproject:

scientific_name_abbrev: glyma

genotype:
  - Williams 82

description: The motifs identified in the accessible chromatin regions (ACRs), as bed files with motif signatures per feature, for Glycine max accession Williams 82 genome assembly 4

original_file_creation_date: "2024-05-01"

local_file_creation_date: "2024-08-12"

publication_doi: 10.1101/2024.07.03.601616

publication_title: "A spatially resolved multiomic single-cell atlas of soybean development"

contributors: "Xuan Zhang, Ziliang Luo, Alexandre P. Marand, Haidong Yan, Hosung Jang, Sohyun Bang, John P. Mendieta, Mark A.A. Minow, Robert J. Schmitz"

data_curators: Steven Cannon

public_access_level: public

license: Open

keywords: soybean, accessible chromatin regions, ACRs, motifs, single-cell sequencing

citation: "Widespread transcription initiation within coding sequences marks tissue identity and accessible chromatin. Xutong Wang, Jingbo Duan, Chancelor B. Clark, Wanjie Feng, Jianxin Ma. bioRxiv 2024.03.27.587116; doi: https://doi.org/10.1101/2024.03.27.587116"