---
identifier: Wm82.gnm6.ann1.expr.mixed.Kour_Boone_2014 

provenance: "The files in this directory derive from supplementary data from Kour et al., 2014, RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline Rich and Other Cell Wall Protein Transcripts., PLoS One. 2014 May 14;9(5):e96342. The files here are held as part of the SoyBase, LegumeInfo, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the SoyBase, LegumeInfo, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory." 

synopsis: "Expression profiling by high throughput sequencing" 

scientific_name: Glycine max  
  
taxid: 3847

scientific_name_abbrev: glyma

genotype:
  - Harosoy
  - Clark

expression_unit: TPM

description: "Examination of soybean isolines in two different genetic background at three different seed weight stages: Seed coats of Clark standard (CS, wild type) & Clark defective (CD, seed coat mutant), Harosoy Standard (HS) & Harosoy defective (HD) at 50-100mg, 100-200mg and 400-500mg. (Kour et al., 2014 "

original_file_creation_date: "2014-05-16"

local_file_creation_date: "2024-05-17"

dataset_release_date: "2014-05-16"

publication_doi: 10.1371/journal.pone.0096342

publication_title: "RNA-Seq Profiling of a Defective Seed Coat Mutation in Glycine max Reveals Differential Expression of Proline-Rich and Other Cell Wall Protein Transcripts" 

bioproject: PRJNA238008

geoseries: GSE54903

data_curators: Andrew Farmer, Evan Lavelle

public_access_level: public

license: open

keywords: soybean, transcription, defective, mutation, seed coat, proline, cell wall

citation: "Kour A et al., RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcripts., PLoS One, 2014;9(5):e96342" 

contributors: "Anupreet Kour, Anne M. Boone, Lila O. Vodkin"