--- scientific_name: Glycine max gene_symbols: - GmGA20ox_a gene_symbol_long: Gibberellic Acid 20-Oxidase a gene_model_pub_name: Glyma.04G244200 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.04G244200 confidence: 3 curators: - Marlene Dorneich-Hayes - Scott Kalberer comments: - GmGA20ox_a is induced by inoculation with compatible rhizobia (e.g., Bradyrhizobium japonicum) in soybean root cortical cells during nodule primordia establishment. Mutant rhizobia (nodC-) that lack a chitin synthase gene, and thus cannot produce the Nod factor, don't induce nodulation and concomitant GA20ox_a gene expression. - GA20ox_a is expressed at the beginning of nodule development, with levels peaking at 12 hours after inoculation and then decreasing substantially by 48 hours post-inoculation. - GA20ox_a gene expression was substantially higher in newly-developing nodules than in other plant structures and is probably nodulation-specific. phenotype_synopsis: GmGA20ox_a is a gibberellic acid biosynthesis gene that increases levels of gibberellin during early nodulation. traits: - entity_name: gibberellin biosynthetic process entity: GO:0009686 - entity_name: regulation of biological process involved in symbiotic interaction entity: GO:0043903 - entity_name: nodulation entity: GO:0009877 references: - citation: Song, Montes-Luz et al., 2022 doi: 10.3389/fpls.2022.820348 pmid: 35498680 - citation: Hayashi, Gresshoff et al., 2014 doi: 10.1111/jipb.12201 pmid: 24673766 - citation: Hayashi, Reid et al., 2012 doi: 10.1111/j.1467-7652.2012.00729.x pmid: 22863334 - citation: Yang, Lan et al., 2022 doi: 10.1111/jipb.13207 pmid: 34962095 --- scientific_name: Glycine max gene_symbols: - GmGA3ox_1a gene_symbol_long: - Gibberellic Acid 3-Oxidase 1a gene_model_pub_name: Glyma.15G012100 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.15G012100 confidence: 4 curators: - Marlene Dorneich-Hayes - Scott Kalberer comments: - GmGA3ox_1a is induced by inoculation with compatible rhizobia (e.g., Bradyrhizobium japonicum) in soybean root cortical cells during nodule primordia establishment. - GA3ox_1a is expressed at the beginning of nodule development, with levels peaking at 12 hours after inoculation and then decreasing substantially by 48 hours post-inoculation. - GA3ox_1a expression is not exclusive to nodule development, appearing in multiple tissues, and likely serves general roles. - Nodulation was reduced by RNAi silencing of GA3ox_1a in transgenic soybean hairy roots. phenotype_synopsis: GmGA3ox_1a is a gibberellic acid biosynthesis gene that increases levels of gibberellin during early nodulation. traits: - entity_name: gibberellin biosynthetic process entity: GO:0009686 - entity_name: regulation of biological process involved in symbiotic interaction entity: GO:0043903 - entity_name: nodulation entity: GO:0009877 references: - citation: Song, Montes-Luz et al., 2022 doi: 10.3389/fpls.2022.820348 pmid: 35498680 - citation: Hayashi, Gresshoff et al., 2014 doi: 10.1111/jipb.12201 pmid: 24673766 - citation: Hayashi, Reid et al., 2012 doi: 10.1111/j.1467-7652.2012.00729.x pmid: 22863334 - citation: Yang, Lan et al., 2022 doi: 10.1111/jipb.13207 pmid: 34962095 --- scientific_name: Glycine max gene_symbols: - GmGA20ox_b gene_symbol_long: Gibberellic Acid 20-Oxidase b gene_model_pub_name: Glyma.06G119100 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.06G119100 confidence: 2 curators: - Scott Kalberer comments: - GmGA20ox_b is induced by inoculation with compatible rhizobia (e.g., Bradyrhizobium japonicum) in soybean root cortical cells during nodule primordia establishment. phenotype_synopsis: GmGA20ox_b is a gibberellic acid biosynthesis gene that increases levels of gibberellin during early nodulation. traits: - entity_name: gibberellin biosynthetic process entity: GO:0009686 - entity_name: regulation of biological process involved in symbiotic interaction entity: GO:0043903 - entity_name: nodulation entity: GO:0009877 references: - citation: Song, Montes-Luz et al., 2022 doi: 10.3389/fpls.2022.820348 pmid: 35498680