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BspQI_01_EXP_REFINEFINAL1.cmap.gz: Bionano data
BspQI_Molecules.bnx.gz: Bionano data
BssSI_01_EXP_REFINEFINAL1.cmap.gz: Bionano data
BssSI_Molecules.bnx.gz: Bionano data
genome_hardmasked.fna.gz: Hardmasked genome assembly
genome_main.fna.gz: Primary genome assembly
genome_softmasked.fna.gz: Softmasked genome assembly
initial_seqid_map.tsv.gz: Mapping between original and modified sequence IDs
order_orient.txt.gz: Order-and-orient file for pseudomolecule construction (alternate to AGP format)
pathfile.agp.gz: Golden path file, for GenBank submission
pchr_by_scaff_RM.tar.gz: Repeat-masked Pseudomolecules in separate files, composed of separate scaffolds, plus remaining unanchored scaffolds
pchr_by_scaff.tar.gz: Pseudomolecules in separate files, composed of separate scaffolds, plus remaining unanchored scaffolds
pchr_entire.tar.gz: Pseudomolecule sequences, single sequence per chromosome
scaffolds_split.tar.gz: Scaffold sequences, unordered, after splitting and patching as noted
scaffolds_unassigned.fna.gz: Scaffolds not included in pseudomolecules
scaffolds.fna.gz: Scaffolds, unoriented, used in the main genome assembly
scaffs_placed.tar.gz: Scaffolds - placed
scaffs_unplaced.tar.gz: Scaffolds - unplaced
seqid_map.tsv.gz: Map (hash) file of old/new chromosome and scaffold IDs
gcv_genome.gff3.gz: gff of assembly molecule sizes
pchr.agp.txt.gz: Golden path file, for GenBank submission
agp_unplaced.txt.gz: Golden path file, for GenBank submission
contigs.fna.gz: Fasta file of contig sequences
altHap.fna.gz: Assembly of alternative haplotype
genome_assignment.txt.gz: SNPs in tetraploid chromosomes and in ancestral genome
genome_repeatmask_coords.gff.gz: Coordinates of genomic repeats
rDNA.fna.gz: Ribosomal DNA sequence
repeat.fna.gz: Genomic sequence consisting primarily of repeats
info_HiC_assembly.txt.gz: Edit coordinates based on HiC analysis
info_nucmer_coords.tar.gz: Coords file from nucmer analysis
info_nucmer_plots.tar.gz: Nucmer plots between assemblies
agp.txt.gz: Golden path file, for GenBank submission
genome.fna.gz: Genome assembly; not primary
id_map.txt.gz: Mapping of feature names
scaff_name_hash.tsv.gz: Mapping of feature names