---
directories:
    work_dir: /usr/local/www/data/private/Phaseolus/vulgaris/OACRex.gnm2/
    from_annot_dir: original
    from_genome_dir: original
prefixes:
    from_annot_prefix: "OAC-Rex_V2.0."
    from_genome_prefix: "OAC-Rex_V2.0."
collection_info:
    genus: Phaseolus
    species: vulgaris
    scientific_name_abbrev: phavu
    coll_genotype: OACRex
    gnm_ver: gnm2
    ann_ver: ann1
    genome_key: NXJW
    annot_key: V62R
readme_info:
    provenance: "The files in this directory were received for direct deposit at the legumeinfo.org Data Store by Drs. and Gregory Perry and Peter Pauls. The files here are held as part of the LegumeInfo and SoyBase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and SoyBase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately."
    source: ~
    synopsis_genome: Phaseolus vulgaris accession OACRex, genome assembly 2
    synopsis_annot: Annotation 1 for Phaseolus vulgaris accession OACRex, genome assembly 2
    genotype: OACRex
    taxid: 3885
    description_genome: "Genome assembly for OAC Rex is a white-seeded, high-yielding cultivar, with resistance to common bacterial blight."
    chromosome_prefix: Chr
    supercontig_prefix: scaffold
    description_annot: "Gene annotation resources."
    bioproject: 
    sraproject: 
    dataset_doi_genome: 
    dataset_doi_annot: 
    genbank_accession: 
    original_file_creation_date: 2023-06-01
    local_file_creation_date: 2023-10-24
    dataset_release_date: 2023-11-01
    contributors: Gregory Perry, Peter Pauls
    publication_doi: 
    citation: 
    publication_title: 
    data_curators: Steven Cannon
    public_access_level: public
    license: Open, with usage agreement
    keywords: "common bean, OAC Rex"
from_to_genome:
  - 
    from: fa.gz
    to: genome_main.fna
    description: "Primary genome assembly"
original_readme_and_usage:
from_to_annot_as_is:
from_to_genome_as_is:
from_to_cds_mrna:
from_to_protein:
from_to_gff:
  -
    from: gff3.gz
    to: gene_models_main.gff3
    description: "Gene models - main"