##### PUB RECORD #####
## 10.1007/s00122-016-2819-7 27832313 null Samanfar et al., 2017 "Samanfar B, Molnar SJ, Charette M, Schoenrock A, Dehne F, Golshani A, Belzile F, Cober ER. Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean. Theor Appl Genet. 2017 Feb;130(2):377-390. doi: 10.1007/s00122-016-2819-7. Epub 2016 Nov 10. PMID: 27832313." ##
PMID- 27832313
OWN - NLM
STAT- MEDLINE
DCOM- 20170209
LR - 20220310
IS - 1432-2242 (Electronic)
IS - 0040-5752 (Linking)
VI - 130
IP - 2
DP - 2017 Feb
TI - Mapping and identification of a potential candidate gene for a novel maturity
locus, E10, in soybean.
PG - 377-390
LID - 10.1007/s00122-016-2819-7 [doi]
AB - E10 is a new maturity locus in soybean and FT4 is the predicted/potential
functional gene underlying the locus. Flowering and maturity time traits play
crucial roles in economic soybean production. Early maturity is critical for
north and west expansion of soybean in Canada. To date, 11 genes/loci have been
identified which control time to flowering and maturity; however, the molecular
bases of almost half of them are not yet clear. We have identified a new maturity
locus called "E10" located at the end of chromosome Gm08. The gene symbol E10e10
has been approved by the Soybean Genetics Committee. The e10e10 genotype results
in 5-10 days earlier maturity than E10E10. A set of presumed E10E10 and e10e10
genotypes was used to identify contrasting SSR and SNP haplotypes. These
haplotypes, and their association with maturity, were maintained through five
backcross generations. A functional genomics approach using a predicted
protein-protein interaction (PPI) approach (Protein-protein Interaction
Prediction Engine, PIPE) was used to investigate approximately 75 genes located
in the genomic region that SSR and SNP analyses identified as the location of the
E10 locus. The PPI analysis identified FT4 as the most likely candidate gene
underlying the E10 locus. Sequence analysis of the two FT4 alleles identified
three SNPs, in the 5'UTR, 3'UTR and fourth exon in the coding region, which
result in differential mRNA structures. Allele-specific markers were developed
for this locus and are available for soybean breeders to efficiently develop
earlier maturing cultivars using molecular marker assisted breeding.
FAU - Samanfar, Bahram
AU - Samanfar B
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada.
FAU - Molnar, Stephen J
AU - Molnar SJ
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada.
FAU - Charette, Martin
AU - Charette M
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada.
FAU - Schoenrock, Andrew
AU - Schoenrock A
AD - School of Computer Science, Carleton University, Ottawa, ON, K1S 5B6, Canada.
FAU - Dehne, Frank
AU - Dehne F
AD - School of Computer Science, Carleton University, Ottawa, ON, K1S 5B6, Canada.
FAU - Golshani, Ashkan
AU - Golshani A
AD - Department of Biology and Ottawa Institute of Systems Biology, Carleton
University, Ottawa, ON, K1S 5B6, Canada.
FAU - Belzile, Francois
AU - Belzile F
AD - Departement de Phytologie and Institut de Biologie Integrative et des Systemes,
Universite Laval, Quebec City, QC, G1V 0A6, Canada.
FAU - Cober, Elroy R
AU - Cober ER
AUID- ORCID: 0000-0002-4673-1808
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada. elroy.cober@agr.gc.ca.
LA - eng
PT - Journal Article
DEP - 20161110
PL - Germany
TA - Theor Appl Genet
JT - TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
JID - 0145600
RN - 0 (DNA, Plant)
RN - 0 (Genetic Markers)
RN - 0 (RNA, Messenger)
SB - IM
MH - *Chromosome Mapping
MH - Computational Biology
MH - DNA, Plant/genetics
MH - *Genetic Loci
MH - Genetic Markers
MH - Genotype
MH - Haplotypes
MH - Microsatellite Repeats
MH - Nucleic Acid Conformation
MH - Plant Breeding
MH - Polymorphism, Single Nucleotide
MH - RNA, Messenger/chemistry
MH - Soybeans/*genetics/physiology
EDAT- 2016/11/11 06:00
MHDA- 2017/02/10 06:00
CRDT- 2016/11/11 06:00
PHST- 2016/07/18 00:00 [received]
PHST- 2016/10/27 00:00 [accepted]
PHST- 2016/11/11 06:00 [pubmed]
PHST- 2017/02/10 06:00 [medline]
PHST- 2016/11/11 06:00 [entrez]
AID - 10.1007/s00122-016-2819-7 [pii]
AID - 10.1007/s00122-016-2819-7 [doi]
PST - ppublish
SO - Theor Appl Genet. 2017 Feb;130(2):377-390. doi: 10.1007/s00122-016-2819-7. Epub
2016 Nov 10.
##### PUB RECORD #####
## 10.1016/j.molp.2016.12.004 27979775 null Yue et al., 2017 "Yue Y, Liu N, Jiang B, Li M, Wang H, Jiang Z, Pan H, Xia Q, Ma Q, Han T, Nian H. A Single Nucleotide Deletion in J Encoding GmELF3 Confers Long Juvenility and Is Associated with Adaption of Tropic Soybean. Mol Plant. 2017 Apr 3;10(4):656-658. doi: 10.1016/j.molp.2016.12.004. Epub 2016 Dec 12. PMID: 27979775." ##
PMID- 27979775
OWN - NLM
STAT- MEDLINE
DCOM- 20181113
LR - 20181113
IS - 1752-9867 (Electronic)
IS - 1674-2052 (Linking)
VI - 10
IP - 4
DP - 2017 Apr 3
TI - A Single Nucleotide Deletion in J Encoding GmELF3 Confers Long Juvenility and Is
Associated with Adaption of Tropic Soybean.
PG - 656-658
LID - S1674-2052(16)30303-3 [pii]
LID - 10.1016/j.molp.2016.12.004 [doi]
FAU - Yue, Yanlei
AU - Yue Y
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
MOA Key Lab of Soybean Biology (Beijing), Institute of Crop Science, The Chinese
Academy of Agricultural Sciences, Beijing 100081, China; Guangdong Provincial Key
Laboratory of Plant Molecular Breeding, South China Agricultural University,
Guangzhou 510642, China.
FAU - Liu, Nianxi
AU - Liu N
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Jiang, Bingjun
AU - Jiang B
AD - MOA Key Lab of Soybean Biology (Beijing), Institute of Crop Science, The Chinese
Academy of Agricultural Sciences, Beijing 100081, China.
FAU - Li, Mu
AU - Li M
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Wang, Haijie
AU - Wang H
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Institute of Crop Sciences, Hainan Academy of Agricultural Sciences, Haikou
571100, China.
FAU - Jiang, Ze
AU - Jiang Z
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Pan, Huanting
AU - Pan H
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Xia, Qiuju
AU - Xia Q
AD - BGI-Shenzhen, Shenzhen 518083, China.
FAU - Ma, Qibin
AU - Ma Q
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Han, Tianfu
AU - Han T
AD - MOA Key Lab of Soybean Biology (Beijing), Institute of Crop Science, The Chinese
Academy of Agricultural Sciences, Beijing 100081, China. Electronic address:
hantianfu@caas.cn.
FAU - Nian, Hai
AU - Nian H
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China. Electronic address:
hnian@scau.edu.cn.
LA - eng
PT - Letter
PT - Research Support, Non-U.S. Gov't
DEP - 20161212
PL - England
TA - Mol Plant
JT - Molecular plant
JID - 101465514
RN - 0 (Nucleotides)
RN - 0 (Plant Proteins)
SB - IM
MH - Adaptation, Physiological/*genetics
MH - Alleles
MH - Nucleotides/*genetics
MH - Plant Proteins/*genetics
MH - Polymorphism, Single Nucleotide/*genetics
MH - *Quantitative Trait, Heritable
MH - Sequence Deletion/*genetics
MH - Soybeans/*genetics/*physiology
EDAT- 2016/12/17 06:00
MHDA- 2018/11/14 06:00
CRDT- 2016/12/17 06:00
PHST- 2016/09/02 00:00 [received]
PHST- 2016/11/10 00:00 [revised]
PHST- 2016/12/06 00:00 [accepted]
PHST- 2016/12/17 06:00 [pubmed]
PHST- 2018/11/14 06:00 [medline]
PHST- 2016/12/17 06:00 [entrez]
AID - S1674-2052(16)30303-3 [pii]
AID - 10.1016/j.molp.2016.12.004 [doi]
PST - ppublish
SO - Mol Plant. 2017 Apr 3;10(4):656-658. doi: 10.1016/j.molp.2016.12.004. Epub 2016
Dec 12.
##### PUB RECORD #####
## 10.1038/ng.3819 28319089 null Lu, Zhao et al., 2017 "Lu S, Zhao X, Hu Y, Liu S, Nan H, Li X, Fang C, Cao D, Shi X, Kong L, Su T, Zhang F, Li S, Wang Z, Yuan X, Cober ER, Weller JL, Liu B, Hou X, Tian Z, Kong F. Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield. Nat Genet. 2017 May;49(5):773-779. doi: 10.1038/ng.3819. Epub 2017 Mar 20. PMID: 28319089." ##
PMID- 28319089
OWN - NLM
STAT- MEDLINE
DCOM- 20170918
LR - 20220330
IS - 1546-1718 (Electronic)
IS - 1061-4036 (Linking)
VI - 49
IP - 5
DP - 2017 May
TI - Natural variation at the soybean J locus improves adaptation to the tropics and
enhances yield.
PG - 773-779
LID - 10.1038/ng.3819 [doi]
AB - Soybean is a major legume crop originating in temperate regions, and photoperiod
responsiveness is a key factor in its latitudinal adaptation. Varieties from
temperate regions introduced to lower latitudes mature early and have extremely
low grain yields. Introduction of the long-juvenile (LJ) trait extends the
vegetative phase and improves yield under short-day conditions, thereby enabling
expansion of cultivation in tropical regions. Here we report the cloning and
characterization of J, the major classical locus conferring the LJ trait, and
identify J as the ortholog of Arabidopsis thaliana EARLY FLOWERING 3 (ELF3). J
depends genetically on the legume-specific flowering repressor E1, and J protein
physically associates with the E1 promoter to downregulate its transcription,
relieving repression of two important FLOWERING LOCUS T (FT) genes and promoting
flowering under short days. Our findings identify an important new component in
flowering-time control in soybean and provide new insight into soybean adaptation
to tropical regions.
FAU - Lu, Sijia
AU - Lu S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Zhao, Xiaohui
AU - Zhao X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Hu, Yilong
AU - Hu Y
AD - Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic
Improvement, and Guangdong Provincial Key Laboratory of Applied Botany, South
China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Liu, Shulin
AU - Liu S
AD - University of the Chinese Academy of Sciences, Beijing, China.
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Nan, Haiyang
AU - Nan H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
FAU - Li, Xiaoming
AU - Li X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Fang, Chao
AU - Fang C
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Cao, Dong
AU - Cao D
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Shi, Xinyi
AU - Shi X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
FAU - Kong, Lingping
AU - Kong L
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Su, Tong
AU - Su T
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Zhang, Fengge
AU - Zhang F
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Li, Shichen
AU - Li S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Wang, Zheng
AU - Wang Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Yuan, Xiaohui
AU - Yuan X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
FAU - Cober, Elroy R
AU - Cober ER
AUID- ORCID: 0000-0002-4673-1808
AD - Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada,
Central Experimental Farm, Ottawa, Ontario, Canada.
FAU - Weller, James L
AU - Weller JL
AD - School of Plant Science, University of Tasmania, Hobart, Tasmania, Australia.
FAU - Liu, Baohui
AU - Liu B
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Hou, Xingliang
AU - Hou X
AD - Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic
Improvement, and Guangdong Provincial Key Laboratory of Applied Botany, South
China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
FAU - Tian, Zhixi
AU - Tian Z
AUID- ORCID: 0000-0001-6051-9670
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Kong, Fanjiang
AU - Kong F
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
LA - eng
PT - Journal Article
DEP - 20170320
PL - United States
TA - Nat Genet
JT - Nature genetics
JID - 9216904
RN - 0 (Plant Proteins)
SB - IM
MH - Adaptation, Physiological/*genetics
MH - Amino Acid Sequence
MH - Base Sequence
MH - *Biomass
MH - China
MH - Flowers/genetics/growth & development
MH - Gene Expression Regulation, Developmental
MH - Gene Expression Regulation, Plant
MH - Gene Regulatory Networks
MH - Genetic Loci/*genetics
MH - *Genetic Variation
MH - Geography
MH - Mutation
MH - Plant Proteins/genetics/metabolism
MH - Promoter Regions, Genetic/genetics
MH - Sequence Homology, Amino Acid
MH - Sequence Homology, Nucleic Acid
MH - Soybeans/classification/*genetics/growth & development
MH - Species Specificity
MH - *Tropical Climate
EDAT- 2017/03/21 06:00
MHDA- 2017/09/19 06:00
CRDT- 2017/03/21 06:00
PHST- 2016/10/10 00:00 [received]
PHST- 2017/02/24 00:00 [accepted]
PHST- 2017/03/21 06:00 [pubmed]
PHST- 2017/09/19 06:00 [medline]
PHST- 2017/03/21 06:00 [entrez]
AID - ng.3819 [pii]
AID - 10.1038/ng.3819 [doi]
PST - ppublish
SO - Nat Genet. 2017 May;49(5):773-779. doi: 10.1038/ng.3819. Epub 2017 Mar 20.
##### PUB RECORD #####
## 10.1038/s41588-020-0604-7 32231277 null Lu, Dong et al., 2020 "Lu S, Dong L, Fang C, Liu S, Kong L, Cheng Q, Chen L, Su T, Nan H, Zhang D, Zhang L, Wang Z, Yang Y, Yu D, Liu X, Yang Q, Lin X, Tang Y, Zhao X, Yang X, Tian C, Xie Q, Li X, Yuan X, Tian Z, Liu B, Weller JL, Kong F. Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication. Nat Genet. 2020 Apr;52(4):428-436. doi: 10.1038/s41588-020-0604-7. Epub 2020 Mar 30. PMID: 32231277." ##
PMID- 32231277
OWN - NLM
STAT- MEDLINE
DCOM- 20200626
LR - 20220607
IS - 1546-1718 (Electronic)
IS - 1061-4036 (Linking)
VI - 52
IP - 4
DP - 2020 Apr
TI - Stepwise selection on homeologous PRR genes controlling flowering and maturity
during soybean domestication.
PG - 428-436
LID - 10.1038/s41588-020-0604-7 [doi]
AB - Adaptive changes in plant phenology are often considered to be a feature of the
so-called 'domestication syndrome' that distinguishes modern crops from their
wild progenitors, but little detailed evidence supports this idea. In soybean, a
major legume crop, flowering time variation is well characterized within
domesticated germplasm and is critical for modern production, but its importance
during domestication is unclear. Here, we identify sequential contributions of
two homeologous pseudo-response-regulator genes, Tof12 and Tof11, to ancient
flowering time adaptation, and demonstrate that they act via LHY homologs to
promote expression of the legume-specific E1 gene and delay flowering under long
photoperiods. We show that Tof12-dependent acceleration of maturity accompanied a
reduction in dormancy and seed dispersal during soybean domestication, possibly
predisposing the incipient crop to latitudinal expansion. Better understanding of
this early phase of crop evolution will help to identify functional variation
lost during domestication and exploit its potential for future crop improvement.
FAU - Lu, Sijia
AU - Lu S
AUID- ORCID: 0000-0002-3110-0915
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China.
FAU - Dong, Lidong
AU - Dong L
AUID- ORCID: 0000-0002-8085-1678
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Fang, Chao
AU - Fang C
AUID- ORCID: 0000-0003-0564-7586
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Liu, Shulin
AU - Liu S
AUID- ORCID: 0000-0002-0154-2966
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese
Academy of Sciences, Beijing, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Kong, Lingping
AU - Kong L
AUID- ORCID: 0000-0002-2671-7443
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Cheng, Qun
AU - Cheng Q
AUID- ORCID: 0000-0001-5595-2058
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Chen, Liyu
AU - Chen L
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Su, Tong
AU - Su T
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Nan, Haiyang
AU - Nan H
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Zhang, Dan
AU - Zhang D
AD - Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural
University, Zhengzhou, China.
FAU - Zhang, Lei
AU - Zhang L
AD - Anhui Academy of Agricultural Sciences, Hefei, China.
FAU - Wang, Zhijuan
AU - Wang Z
AD - State Key Laboratory of Agricultural Microbiology, College of Plant Science and
Technology, Huazhong Agricultural University, Wuhan, China.
FAU - Yang, Yongqing
AU - Yang Y
AD - Root Biology Center, College of Resources and Environment, Fujian Agriculture and
Forestry University, Fuzhou, China.
FAU - Yu, Deyue
AU - Yu D
AD - National Center for Soybean Improvement, National Key Laboratory of Crop Genetics
and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
FAU - Liu, Xiaolei
AU - Liu X
AD - Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction,
Ministry of Education & College of Animal Science and Technology, Huazhong
Agricultural University, Wuhan, China.
FAU - Yang, Qingyong
AU - Yang Q
AUID- ORCID: 0000-0002-3510-8906
AD - Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics,
Huazhong Agricultural University, Wuhan, China.
FAU - Lin, Xiaoya
AU - Lin X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Tang, Yang
AU - Tang Y
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Zhao, Xiaohui
AU - Zhao X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Yang, Xinquan
AU - Yang X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Tian, Changen
AU - Tian C
AUID- ORCID: 0000-0002-8410-6624
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Xie, Qiguang
AU - Xie Q
AD - Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan
University, Kaifeng, China.
FAU - Li, Xia
AU - Li X
AD - State Key Laboratory of Agricultural Microbiology, College of Plant Science and
Technology, Huazhong Agricultural University, Wuhan, China.
FAU - Yuan, Xiaohui
AU - Yuan X
AUID- ORCID: 0000-0003-0661-5332
AD - School of Computer Science and Technology, Wuhan University of Technology, Wuhan,
China. yuanxiaohui@whut.edu.cn.
FAU - Tian, Zhixi
AU - Tian Z
AUID- ORCID: 0000-0001-6051-9670
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese
Academy of Sciences, Beijing, China. zxtian@genetics.ac.cn.
AD - University of Chinese Academy of Sciences, Beijing, China. zxtian@genetics.ac.cn.
FAU - Liu, Baohui
AU - Liu B
AUID- ORCID: 0000-0003-3491-8293
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China. liubh@iga.ac.cn.
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China. liubh@iga.ac.cn.
FAU - Weller, James L
AU - Weller JL
AUID- ORCID: 0000-0003-2423-8286
AD - School of Natural Sciences, University of Tasmania, Hobart, Tasmania, Australia.
jim.weller@utas.edu.au.
FAU - Kong, Fanjiang
AU - Kong F
AUID- ORCID: 0000-0001-7138-1478
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China. kongfj@gzhu.edu.cn.
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China. kongfj@gzhu.edu.cn.
AD - University of Chinese Academy of Sciences, Beijing, China. kongfj@gzhu.edu.cn.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20200330
PL - United States
TA - Nat Genet
JT - Nature genetics
JID - 9216904
SB - IM
MH - Crops, Agricultural/*genetics
MH - Domestication
MH - Fabaceae/genetics
MH - Flowers/*genetics
MH - Genes, Plant/*genetics
MH - Photoperiod
MH - Seeds/genetics
MH - Soybeans/*genetics
EDAT- 2020/04/02 06:00
MHDA- 2020/06/27 06:00
CRDT- 2020/04/02 06:00
PHST- 2019/10/09 00:00 [received]
PHST- 2020/02/27 00:00 [accepted]
PHST- 2020/04/02 06:00 [pubmed]
PHST- 2020/06/27 06:00 [medline]
PHST- 2020/04/02 06:00 [entrez]
AID - 10.1038/s41588-020-0604-7 [pii]
AID - 10.1038/s41588-020-0604-7 [doi]
PST - ppublish
SO - Nat Genet. 2020 Apr;52(4):428-436. doi: 10.1038/s41588-020-0604-7. Epub 2020 Mar
30.
##### PUB RECORD #####
## 10.1093/aob/mct269 24284817 PMC3906962 Tsubokura, Watanabe et al., 2013 "Tsubokura Y, Watanabe S, Xia Z, Kanamori H, Yamagata H, Kaga A, Katayose Y, Abe J, Ishimoto M, Harada K. Natural variation in the genes responsible for maturity loci E1, E2, E3 and E4 in soybean. Ann Bot. 2014 Feb;113(3):429-41. doi: 10.1093/aob/mct269. Epub 2013 Nov 26. PMID: 24284817; PMCID: PMC3906962." ##
PMID- 24284817
OWN - NLM
STAT- MEDLINE
DCOM- 20140929
LR - 20220309
IS - 1095-8290 (Electronic)
IS - 0305-7364 (Print)
IS - 0305-7364 (Linking)
VI - 113
IP - 3
DP - 2014 Feb
TI - Natural variation in the genes responsible for maturity loci E1, E2, E3 and E4 in
soybean.
PG - 429-41
LID - 10.1093/aob/mct269 [doi]
AB - BACKGROUND AND AIMS: The timing of flowering has a direct impact on successful
seed production in plants. Flowering of soybean (Glycine max) is controlled by
several E loci, and previous studies identified the genes responsible for the
flowering loci E1, E2, E3 and E4. However, natural variation in these genes has
not been fully elucidated. The aims of this study were the identification of new
alleles, establishment of allele diagnoses, examination of allelic combinations
for adaptability, and analysis of the integrated effect of these loci on
flowering. METHODS: The sequences of these genes and their flanking regions were
determined for 39 accessions by primer walking. Systematic discrimination among
alleles was performed using DNA markers. Genotypes at the E1-E4 loci were
determined for 63 accessions covering several ecological types using DNA markers
and sequencing, and flowering times of these accessions at three sowing times
were recorded. KEY RESULTS: A new allele with an insertion of a long interspersed
nuclear element (LINE) at the promoter of the E1 locus (e1-re) was identified.
Insertion and deletion of 36 bases in the eighth intron (E2-in and E2-dl) were
observed at the E2 locus. Systematic discrimination among the alleles at the
E1-E3 loci was achieved using PCR-based markers. Allelic combinations at the
E1-E4 loci were found to be associated with ecological types, and about 62-66 %
of variation of flowering time could be attributed to these loci. CONCLUSIONS:
The study advances understanding of the combined roles of the E1-E4 loci in
flowering and geographic adaptation, and suggests the existence of unidentified
genes for flowering in soybean.
FAU - Tsubokura, Yasutaka
AU - Tsubokura Y
AD - National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 306-8602, Japan.
FAU - Watanabe, Satoshi
AU - Watanabe S
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Kanamori, Hiroyuki
AU - Kanamori H
FAU - Yamagata, Harumi
AU - Yamagata H
FAU - Kaga, Akito
AU - Kaga A
FAU - Katayose, Yuichi
AU - Katayose Y
FAU - Abe, Jun
AU - Abe J
FAU - Ishimoto, Masao
AU - Ishimoto M
FAU - Harada, Kyuya
AU - Harada K
LA - eng
SI - GENBANK/AB795360
SI - GENBANK/AB795361
SI - GENBANK/AB795362
SI - GENBANK/AB795363
SI - GENBANK/AB795364
SI - GENBANK/AB795365
SI - GENBANK/AB795366
SI - GENBANK/AB795367
SI - GENBANK/AB795368
SI - GENBANK/AB795369
SI - GENBANK/AB795370
SI - GENBANK/AB795371
SI - GENBANK/AB795372
SI - GENBANK/AB795373
SI - GENBANK/AB795374
SI - GENBANK/AB795375
SI - GENBANK/AB795376
SI - GENBANK/AB795377
SI - GENBANK/AB795378
SI - GENBANK/AB795379
SI - GENBANK/AB795380
SI - GENBANK/AB795381
SI - GENBANK/AB795382
SI - GENBANK/AB795383
SI - GENBANK/AB795384
SI - GENBANK/AB795385
SI - GENBANK/AB795386
SI - GENBANK/AB795387
SI - GENBANK/AB795388
SI - GENBANK/AB795389
SI - GENBANK/AB795390
SI - GENBANK/AB795391
SI - GENBANK/AB795392
SI - GENBANK/AB797147
SI - GENBANK/AB797148
SI - GENBANK/AB797149
SI - GENBANK/AB797150
SI - GENBANK/AB797151
SI - GENBANK/AB797152
SI - GENBANK/AB797153
SI - GENBANK/AB797154
SI - GENBANK/AB797155
SI - GENBANK/AB797156
SI - GENBANK/AB797157
SI - GENBANK/AB797158
SI - GENBANK/AB797159
SI - GENBANK/AB797160
SI - GENBANK/AB797161
SI - GENBANK/AB797162
SI - GENBANK/AB797163
SI - GENBANK/AB797164
SI - GENBANK/AB797165
SI - GENBANK/AB797166
SI - GENBANK/AB797167
SI - GENBANK/AB797168
SI - GENBANK/AB797169
SI - GENBANK/AB797170
SI - GENBANK/AB797171
SI - GENBANK/AB797172
SI - GENBANK/AB797173
SI - GENBANK/AB797174
SI - GENBANK/AB797175
SI - GENBANK/AB797176
SI - GENBANK/AB797177
SI - GENBANK/AB797178
SI - GENBANK/AB797179
SI - GENBANK/AB797180
SI - GENBANK/AB797181
SI - GENBANK/AB797182
SI - GENBANK/AB797183
SI - GENBANK/AB797184
SI - GENBANK/AB797185
SI - GENBANK/AB797186
SI - GENBANK/AB797187
SI - GENBANK/AB797188
SI - GENBANK/AB797189
SI - GENBANK/AB797190
SI - GENBANK/AB797191
SI - GENBANK/AB797192
SI - GENBANK/AB797193
SI - GENBANK/AB797194
SI - GENBANK/AB797195
SI - GENBANK/AB797196
SI - GENBANK/AB797197
SI - GENBANK/AB797198
SI - GENBANK/AB797199
SI - GENBANK/AB797200
SI - GENBANK/AB797201
SI - GENBANK/AB797202
SI - GENBANK/AB797203
SI - GENBANK/AB797204
SI - GENBANK/AB797205
SI - GENBANK/AB797206
SI - GENBANK/AB797207
SI - GENBANK/AB797208
SI - GENBANK/AB797209
SI - GENBANK/AB797210
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20131126
PL - England
TA - Ann Bot
JT - Annals of botany
JID - 0372347
RN - 0 (Genetic Markers)
RN - 0 (Plant Proteins)
SB - IM
MH - Adaptation, Physiological
MH - Alleles
MH - Base Sequence
MH - Chromosome Mapping
MH - Flowers/genetics/physiology
MH - *Gene Expression Regulation, Plant
MH - Genetic Loci/genetics
MH - Genetic Markers/genetics
MH - *Genetic Variation
MH - Genotype
MH - Haplotypes
MH - Molecular Sequence Data
MH - Photoperiod
MH - Plant Proteins/*genetics/metabolism
MH - Polymorphism, Single Nucleotide
MH - Quantitative Trait Loci/*genetics
MH - Seeds/genetics/physiology
MH - Sequence Alignment
MH - Sequence Analysis, DNA
MH - Soybeans/*genetics/physiology
MH - Time Factors
PMC - PMC3906962
OTO - NOTNLM
OT - E locus
OT - Glycine max
OT - SNP
OT - ecological type
OT - flowering time
OT - haplotype
OT - marker-assisted selection
OT - single nucleotide polymorphism
OT - soybean
EDAT- 2013/11/29 06:00
MHDA- 2014/09/30 06:00
CRDT- 2013/11/29 06:00
PHST- 2013/11/29 06:00 [entrez]
PHST- 2013/11/29 06:00 [pubmed]
PHST- 2014/09/30 06:00 [medline]
AID - mct269 [pii]
AID - 10.1093/aob/mct269 [doi]
PST - ppublish
SO - Ann Bot. 2014 Feb;113(3):429-41. doi: 10.1093/aob/mct269. Epub 2013 Nov 26.
##### PUB RECORD #####
## 10.1093/jxb/erw283 27422993 PMC5014162 Takeshima, Hayashi et al., 2016 "Takeshima R, Hayashi T, Zhu J, Zhao C, Xu M, Yamaguchi N, Sayama T, Ishimoto M, Kong L, Shi X, Liu B, Tian Z, Yamada T, Kong F, Abe J. A soybean quantitative trait locus that promotes flowering under long days is identified as FT5a, a FLOWERING LOCUS T ortholog. J Exp Bot. 2016 Sep;67(17):5247-58. doi: 10.1093/jxb/erw283. Epub 2016 Jul 15. PMID: 27422993; PMCID: PMC5014162." ##
PMID- 27422993
OWN - NLM
STAT- MEDLINE
DCOM- 20171107
LR - 20181113
IS - 1460-2431 (Electronic)
IS - 0022-0957 (Print)
IS - 0022-0957 (Linking)
VI - 67
IP - 17
DP - 2016 Sep
TI - A soybean quantitative trait locus that promotes flowering under long days is
identified as FT5a, a FLOWERING LOCUS T ortholog.
PG - 5247-58
LID - 10.1093/jxb/erw283 [doi]
AB - FLOWERING LOCUS T (FT) is an important floral integrator whose functions are
conserved across plant species. In soybean, two orthologs, FT2a and FT5a, play a
major role in initiating flowering. Their expression in response to different
photoperiods is controlled by allelic combinations at the maturity loci E1 to E4,
generating variation in flowering time among cultivars. We determined the
molecular basis of a quantitative trait locus (QTL) for flowering time in linkage
group J (Chromosome 16). Fine-mapping delimited the QTL to a genomic region of
107kb that harbors FT5a We detected 15 DNA polymorphisms between parents with the
early-flowering (ef) and late-flowering (lf) alleles in the promoter region, an
intron, and the 3' untranslated region of FT5a, although the FT5a coding regions
were identical. Transcript abundance of FT5a was higher in near-isogenic lines
for ef than in those for lf, suggesting that different transcriptional activities
or mRNA stability caused the flowering time difference. Single-nucleotide
polymorphism (SNP) calling from re-sequencing data for 439 cultivated and wild
soybean accessions indicated that ef is a rare haplotype that is distinct from
common haplotypes including lf The ef allele at FT5a may play an adaptive role at
latitudes where early flowering is desirable.
CI - (c) The Author 2016. Published by Oxford University Press on behalf of the Society
for Experimental Biology.
FAU - Takeshima, Ryoma
AU - Takeshima R
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Hayashi, Takafumi
AU - Hayashi T
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Zhu, Jianghui
AU - Zhu J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Zhao, Chen
AU - Zhao C
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Xu, Meilan
AU - Xu M
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Yamaguchi, Naoya
AU - Yamaguchi N
AD - Hokkaido Research Organization Tokachi Agricultural Experiment Station, Memuro,
Hokkaido 082-0081, Japan.
FAU - Sayama, Takashi
AU - Sayama T
AD - National Institute of Agrobiological Sciences, Kannondai, Ibaraki 305-8602,
Japan.
FAU - Ishimoto, Masao
AU - Ishimoto M
AD - National Institute of Agrobiological Sciences, Kannondai, Ibaraki 305-8602,
Japan.
FAU - Kong, Lingping
AU - Kong L
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Shi, Xinyi
AU - Shi X
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Liu, Baohui
AU - Liu B
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Tian, Zhixi
AU - Tian Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 1001014,
China.
FAU - Yamada, Tetsuya
AU - Yamada T
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Kong, Fanjiang
AU - Kong F
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
kongfj@iga.ac.cn jabe@res.agr.hokucai.ac.jp.
FAU - Abe, Jun
AU - Abe J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan kongfj@iga.ac.cn jabe@res.agr.hokucai.ac.jp.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20160715
PL - England
TA - J Exp Bot
JT - Journal of experimental botany
JID - 9882906
RN - 0 (Plant Proteins)
SB - IM
MH - Flowers/*genetics/growth & development/physiology
MH - Gene Expression Regulation, Plant
MH - Genes, Plant/genetics/physiology
MH - Photoperiod
MH - Plant Proteins/genetics/physiology
MH - Polymorphism, Single Nucleotide/genetics
MH - Quantitative Trait Loci/*genetics/physiology
MH - Sequence Analysis, DNA
MH - Soybeans/*genetics/growth & development/physiology
PMC - PMC5014162
OTO - NOTNLM
OT - FLOWERING LOCUS T
OT - SNP calling
OT - flowering time
OT - near-isogenic line
OT - photoperiod sensitivity
OT - quantitative trait locus
OT - soybean.
EDAT- 2016/07/17 06:00
MHDA- 2017/11/08 06:00
CRDT- 2016/07/17 06:00
PHST- 2016/07/17 06:00 [entrez]
PHST- 2016/07/17 06:00 [pubmed]
PHST- 2017/11/08 06:00 [medline]
AID - erw283 [pii]
AID - 10.1093/jxb/erw283 [doi]
PST - ppublish
SO - J Exp Bot. 2016 Sep;67(17):5247-58. doi: 10.1093/jxb/erw283. Epub 2016 Jul 15.
##### PUB RECORD #####
## 10.1104/pp.15.00763 26134161 PMC4528769 Xu, Yamagishi et al., 2015 "Xu M, Yamagishi N, Zhao C, Takeshima R, Kasai M, Watanabe S, Kanazawa A, Yoshikawa N, Liu B, Yamada T, Abe J. The Soybean-Specific Maturity Gene E1 Family of Floral Repressors Controls Night-Break Responses through Down-Regulation of FLOWERING LOCUS T Orthologs. Plant Physiol. 2015 Aug;168(4):1735-46. doi: 10.1104/pp.15.00763. Epub 2015 Jul 1. PMID: 26134161; PMCID: PMC4528769." ##
PMID- 26134161
OWN - NLM
STAT- MEDLINE
DCOM- 20160511
LR - 20220309
IS - 1532-2548 (Electronic)
IS - 0032-0889 (Print)
IS - 0032-0889 (Linking)
VI - 168
IP - 4
DP - 2015 Aug
TI - The Soybean-Specific Maturity Gene E1 Family of Floral Repressors Controls
Night-Break Responses through Down-Regulation of FLOWERING LOCUS T Orthologs.
PG - 1735-46
LID - 10.1104/pp.15.00763 [doi]
AB - Photoperiodism is a rhythmic change of sensitivity to light, which helps plants
to adjust flowering time according to seasonal changes in daylength and to adapt
to growing conditions at various latitudes. To reveal the molecular basis of
photoperiodism in soybean (Glycine max), a facultative short-day plant, we
analyzed the transcriptional profiles of the maturity gene E1 family and two
FLOWERING LOCUS T (FT) orthologs (FT2a and FT5a). E1, a repressor for FT2a and
FT5a, and its two homologs, E1-like-a (E1La) and E1Lb, exhibited two peaks of
expression in long days. Using two different approaches (experiments with
transition between light and dark phases and night-break experiments), we
revealed that the E1 family genes were expressed only during light periods and
that their induction after dawn in long days required a period of light before
dusk the previous day. In the cultivar Toyomusume, which lacks the E1 gene,
virus-induced silencing of E1La and E1Lb up-regulated the expression of FT2a and
FT5a and led to early flowering. Therefore, E1, E1La, and E1Lb function similarly
in flowering. Regulation of E1 and E1L expression by light was under the control
of E3 and E4, which encode phytochrome A proteins. Our data suggest that
phytochrome A-mediated transcriptional induction of E1 and its homologs by light
plays a critical role in photoperiodic induction of flowering in soybean.
CI - (c) 2015 American Society of Plant Biologists. All Rights Reserved.
FAU - Xu, Meilan
AU - Xu M
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Yamagishi, Noriko
AU - Yamagishi N
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Zhao, Chen
AU - Zhao C
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Takeshima, Ryoma
AU - Takeshima R
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Kasai, Megumi
AU - Kasai M
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Kanazawa, Akira
AU - Kanazawa A
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Yoshikawa, Nobuyuki
AU - Yoshikawa N
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Liu, Baohui
AU - Liu B
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.)
liubh@neigaehrb.ac.cn jabe@res.agr.hokudai.ac.jp.
FAU - Yamada, Tetsuya
AU - Yamada T
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Abe, Jun
AU - Abe J
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.)
liubh@neigaehrb.ac.cn jabe@res.agr.hokudai.ac.jp.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20150701
PL - United States
TA - Plant Physiol
JT - Plant physiology
JID - 0401224
RN - 0 (Plant Proteins)
SB - IM
MH - Amino Acid Sequence
MH - *Down-Regulation
MH - Flowers/*genetics
MH - Gene Expression Regulation, Plant/radiation effects
MH - Light
MH - Molecular Sequence Data
MH - Photoperiod
MH - Plant Proteins/*genetics
MH - RNA Interference
MH - Reverse Transcriptase Polymerase Chain Reaction
MH - Sequence Homology, Amino Acid
MH - Soybeans/*genetics
PMC - PMC4528769
EDAT- 2015/07/03 06:00
MHDA- 2016/05/12 06:00
CRDT- 2015/07/03 06:00
PHST- 2015/05/21 00:00 [received]
PHST- 2015/06/29 00:00 [accepted]
PHST- 2015/07/03 06:00 [entrez]
PHST- 2015/07/03 06:00 [pubmed]
PHST- 2016/05/12 06:00 [medline]
AID - pp.15.00763 [pii]
AID - PP201500763 [pii]
AID - 10.1104/pp.15.00763 [doi]
PST - ppublish
SO - Plant Physiol. 2015 Aug;168(4):1735-46. doi: 10.1104/pp.15.00763. Epub 2015 Jul
1.
##### PUB RECORD #####
## 10.1104/pp.110.160796 20864544 PMC2971601 Kong, Liu et al., 2010 "Kong F, Liu B, Xia Z, Sato S, Kim BM, Watanabe S, Yamada T, Tabata S, Kanazawa A, Harada K, Abe J. Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean. Plant Physiol. 2010 Nov;154(3):1220-31. doi: 10.1104/pp.110.160796. Epub 2010 Sep 23. PMID: 20864544; PMCID: PMC2971601." ##
PMID- 20864544
OWN - NLM
STAT- MEDLINE
DCOM- 20110210
LR - 20220408
IS - 1532-2548 (Electronic)
IS - 0032-0889 (Print)
IS - 0032-0889 (Linking)
VI - 154
IP - 3
DP - 2010 Nov
TI - Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the
control of photoperiodic flowering in soybean.
PG - 1220-31
LID - 10.1104/pp.110.160796 [doi]
AB - FLOWERING LOCUS T (FT) is a key flowering integrator in Arabidopsis (Arabidopsis
thaliana), with homologs that encode florigens in many plant species regardless
of the type of photoperiodic response. We identified 10 FT homologs, which were
arranged as five pairs of linked genes in different homoeologous chromosomal
regions, in soybean (Glycine max), a paleopolyploid species. Two of the FT
homologs, GmFT2a and GmFT5a, were highly up-regulated under short-day (SD)
conditions (inductive for flowering in soybean) and had diurnal expression
patterns with the highest expression 4 h after dawn. Under long-day (LD)
conditions, expression of GmFT2a and GmFT5a was down-regulated and did not follow
a diurnal pattern. Flowering took much longer to initiate under LD than under SD,
and only the GmFT5a transcript accumulated late in development under LD. Ectopic
expression analysis in Arabidopsis confirmed that both GmFT2a and GmFT5a had the
same function as Arabidopsis FT, but the effect of GmFT5a was more prominent. A
double-mutant soybean line for two PHYTOCHROME A (PHYA) genes expressed high
levels of GmFT2a and GmFT5a under LD, and it flowered slightly earlier under LD
than the wild type grown under SD. The expression levels of GmFT2a and GmFT5a
were regulated by the PHYA-mediated photoperiodic regulation system, and the
GmFT5a expression was also regulated by a photoperiod-independent system in LD.
Taken together, our results suggest that GmFT2a and GmFT5a coordinately control
flowering and enable the adaptation of soybean to a wide range of photoperiodic
environments.
FAU - Kong, Fanjiang
AU - Kong F
AD - Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences,
Harbin, China.
FAU - Liu, Baohui
AU - Liu B
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Sato, Shusei
AU - Sato S
FAU - Kim, Bo Min
AU - Kim BM
FAU - Watanabe, Satoshi
AU - Watanabe S
FAU - Yamada, Tetsuya
AU - Yamada T
FAU - Tabata, Satoshi
AU - Tabata S
FAU - Kanazawa, Akira
AU - Kanazawa A
FAU - Harada, Kyuya
AU - Harada K
FAU - Abe, Jun
AU - Abe J
LA - eng
SI - GENBANK/AB550120
SI - GENBANK/AB550121
SI - GENBANK/AB550122
SI - GENBANK/AB550124
SI - GENBANK/AB550125
SI - GENBANK/AB550126
SI - GENBANK/AP011804
SI - GENBANK/AP011805
SI - GENBANK/AP011806
SI - GENBANK/AP011807
SI - GENBANK/AP011808
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20100923
PL - United States
TA - Plant Physiol
JT - Plant physiology
JID - 0401224
RN - 0 (DNA, Plant)
RN - 0 (Plant Proteins)
SB - IM
MH - Amino Acid Sequence
MH - Arabidopsis/genetics
MH - Chromosome Mapping
MH - DNA, Plant/genetics
MH - Flowers/*physiology
MH - Gene Expression Regulation, Plant
MH - Molecular Sequence Data
MH - *Photoperiod
MH - Plant Proteins/genetics/*metabolism
MH - Plants, Genetically Modified/genetics
MH - Sequence Alignment
MH - Sequence Analysis, DNA
MH - Soybeans/*genetics/metabolism/physiology
PMC - PMC2971601
EDAT- 2010/09/25 06:00
MHDA- 2011/02/11 06:00
CRDT- 2010/09/25 06:00
PHST- 2010/09/25 06:00 [entrez]
PHST- 2010/09/25 06:00 [pubmed]
PHST- 2011/02/11 06:00 [medline]
AID - pp.110.160796 [pii]
AID - 160796 [pii]
AID - 10.1104/pp.110.160796 [doi]
PST - ppublish
SO - Plant Physiol. 2010 Nov;154(3):1220-31. doi: 10.1104/pp.110.160796. Epub 2010 Sep
23.
##### PUB RECORD #####
## 10.1105/tpc.114.135103 25663621 PMC4456927 Wang, Zhou et al., 2015 "Wang Z, Zhou Z, Liu Y, Liu T, Li Q, Ji Y, Li C, Fang C, Wang M, Wu M, Shen Y, Tang T, Ma J, Tian Z. Functional evolution of phosphatidylethanolamine binding proteins in soybean and Arabidopsis. Plant Cell. 2015 Feb;27(2):323-36. doi: 10.1105/tpc.114.135103. Epub 2015 Feb 6. PMID: 25663621; PMCID: PMC4456927." ##
PMID- 25663621
OWN - NLM
STAT- MEDLINE
DCOM- 20151201
LR - 20220309
IS - 1532-298X (Electronic)
IS - 1040-4651 (Print)
IS - 1040-4651 (Linking)
VI - 27
IP - 2
DP - 2015 Feb
TI - Functional evolution of phosphatidylethanolamine binding proteins in soybean and
Arabidopsis.
PG - 323-36
LID - 10.1105/tpc.114.135103 [doi]
AB - Gene duplication provides resources for novel gene functions. Identification of
the amino acids responsible for functional conservation and divergence of
duplicated genes will strengthen our understanding of their evolutionary course.
Here, we conducted a systemic functional investigation of
phosphatidylethanolamine binding proteins (PEBPs) in soybean (Glycine max) and
Arabidopsis thaliana. Our results demonstrated that after the ancestral
duplication, the lineage of the common ancestor of the FLOWERING LOCUS T (FT) and
TERMINAL FLOWER1 (TFL1) subfamilies functionally diverged from the MOTHER OF FT
AND TFL1 (MFT) subfamily to activate flowering and repress flowering,
respectively. They also underwent further specialization after subsequent
duplications. Although the functional divergence increased with duplication age,
we observed rapid functional divergence for a few pairs of young duplicates in
soybean. Association analysis between amino acids and functional variations
identified critical amino acid residues that led to functional differences in
PEBP members. Using transgenic analysis, we validated a subset of these
differences. We report clear experimental evidence for the functional evolution
of the PEBPs in the MFT, FT, and TFL1 subfamilies, which predate the origin of
angiosperms. Our results highlight the role of amino acid divergence in driving
evolutionary novelty after duplication.
CI - (c) 2015 American Society of Plant Biologists. All rights reserved.
FAU - Wang, Zheng
AU - Wang Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China.
FAU - Zhou, Zhengkui
AU - Zhou Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China.
FAU - Liu, Yunfeng
AU - Liu Y
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Liu, Tengfei
AU - Liu T
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Li, Qing
AU - Li Q
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Ji, Yuanyuan
AU - Ji Y
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Li, Congcong
AU - Li C
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Fang, Chao
AU - Fang C
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Wang, Min
AU - Wang M
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Wu, Mian
AU - Wu M
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China.
FAU - Shen, Yanting
AU - Shen Y
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Tang, Tian
AU - Tang T
AD - State Key Laboratory of Biocontrol and Key Laboratory of Biodiversity Dynamics
and Conservation of Guangdong Higher Education Institutes, Grant School of Life
Sciences, Sun Yat-Sen University, Guangzhou 510080, China lsstt@mail.sysu.edu.cn
maj@purdue.edu zxtian@genetics.ac.cn.
FAU - Ma, Jianxin
AU - Ma J
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907
lsstt@mail.sysu.edu.cn maj@purdue.edu zxtian@genetics.ac.cn.
FAU - Tian, Zhixi
AU - Tian Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China lsstt@mail.sysu.edu.cn maj@purdue.edu zxtian@genetics.ac.cn.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20150206
PL - England
TA - Plant Cell
JT - The Plant cell
JID - 9208688
RN - 0 (Amino Acids)
RN - 0 (Phosphatidylethanolamine Binding Protein)
RN - 0 (Plant Proteins)
SB - IM
MH - Amino Acid Sequence
MH - Amino Acids/metabolism
MH - Arabidopsis/*genetics/metabolism
MH - *Evolution, Molecular
MH - Flowers/physiology
MH - Gene Expression Regulation, Plant
MH - Genes, Duplicate
MH - Genes, Plant
MH - Molecular Sequence Data
MH - Phosphatidylethanolamine Binding Protein/chemistry/*genetics/*metabolism
MH - Plant Proteins/metabolism
MH - Protein Binding
MH - Protein Transport
MH - Soybeans/*genetics/metabolism
MH - Subcellular Fractions/metabolism
PMC - PMC4456927
EDAT- 2015/02/11 06:00
MHDA- 2015/12/15 06:00
CRDT- 2015/02/10 06:00
PHST- 2015/02/10 06:00 [entrez]
PHST- 2015/02/11 06:00 [pubmed]
PHST- 2015/12/15 06:00 [medline]
AID - tpc.114.135103 [pii]
AID - 135103 [pii]
AID - 10.1105/tpc.114.135103 [doi]
PST - ppublish
SO - Plant Cell. 2015 Feb;27(2):323-36. doi: 10.1105/tpc.114.135103. Epub 2015 Feb 6.
##### PUB RECORD #####
## 10.1111/j.1365-313x.2004.02072.x 15125772 null Noh, Bizzell et al., 2004 "Noh YS, Bizzell CM, Noh B, Schomburg FM, Amasino RM. EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis. Plant J. 2004 May;38(4):664-72. doi: 10.1111/j.1365-313X.2004.02072.x. PMID: 15125772." ##
PMID- 15125772
OWN - NLM
STAT- MEDLINE
DCOM- 20040709
LR - 20061115
IS - 0960-7412 (Print)
IS - 0960-7412 (Linking)
VI - 38
IP - 4
DP - 2004 May
TI - EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis.
PG - 664-72
AB - EARLY FLOWERING 5 (ELF5) is a single-copy gene involved in flowering time
regulation in Arabidopsis. ELF5 encodes a nuclear-targeted protein that is
related to the human nuclear protein containing a WW domain (Npw)38-binding
protein (NpwBP). Lesions in ELF5 cause early flowering in both long days and
short days. elf5 mutations partially suppress the late flowering of both
autonomous-pathway mutants and FRIGIDA (FRI)-containing lines by reducing the
expression of FLOWERING LOCUS C (FLC), a floral repressor upon which many of the
flowering pathways converge. elf5 mutations also partially suppress
photoperiod-pathway mutants, and this, along with the ability of elf5 mutations
to cause early flowering in short days, indicates that ELF5 also affects
flowering independently of FLC.
FAU - Noh, Yoo-Sun
AU - Noh YS
AD - Department of Biochemistry, College of Agricultural and Life Sciences, University
of Wisconsin, Madison, WI 53706-1544, USA.
FAU - Bizzell, Colleen M
AU - Bizzell CM
FAU - Noh, Bosl
AU - Noh B
FAU - Schomburg, Fritz M
AU - Schomburg FM
FAU - Amasino, Richard M
AU - Amasino RM
LA - eng
SI - GENBANK/AY526094
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
PT - Research Support, U.S. Gov't, Non-P.H.S.
PL - England
TA - Plant J
JT - The Plant journal : for cell and molecular biology
JID - 9207397
RN - 0 (5' Untranslated Regions)
RN - 0 (Arabidopsis Proteins)
RN - 0 (DNA Primers)
RN - 0 (ELF5 protein, Arabidopsis)
RN - 0 (Repressor Proteins)
SB - IM
MH - 5' Untranslated Regions/genetics
MH - Amino Acid Sequence
MH - Arabidopsis/*genetics
MH - Arabidopsis Proteins/*genetics
MH - Base Sequence
MH - Circadian Rhythm
MH - DNA Primers
MH - Flowers/genetics
MH - Molecular Sequence Data
MH - Polymerase Chain Reaction
MH - Protein Biosynthesis/genetics
MH - Repressor Proteins/*genetics
MH - Seasons
MH - Sequence Alignment
MH - Sequence Homology, Amino Acid
EDAT- 2004/05/06 05:00
MHDA- 2004/07/10 05:00
CRDT- 2004/05/06 05:00
PHST- 2004/05/06 05:00 [pubmed]
PHST- 2004/07/10 05:00 [medline]
PHST- 2004/05/06 05:00 [entrez]
AID - TPJ2072 [pii]
AID - 10.1111/j.1365-313X.2004.02072.x [doi]
PST - ppublish
SO - Plant J. 2004 May;38(4):664-72. doi: 10.1111/j.1365-313X.2004.02072.x.
##### PUB RECORD #####
## 10.1111/jipb.13021 33090664 null Lin, Liu et al., 2021 "Lin X, Liu B, Weller JL, Abe J, Kong F. Molecular mechanisms for the photoperiodic regulation of flowering in soybean. J Integr Plant Biol. 2021 Jun;63(6):981-994. doi: 10.1111/jipb.13021. Epub 2021 Apr 26. PMID: 33090664." ##
PMID- 33090664
OWN - NLM
STAT- MEDLINE
DCOM- 20210804
LR - 20210804
IS - 1744-7909 (Electronic)
IS - 1672-9072 (Linking)
VI - 63
IP - 6
DP - 2021 Jun
TI - Molecular mechanisms for the photoperiodic regulation of flowering in soybean.
PG - 981-994
LID - 10.1111/jipb.13021 [doi]
AB - Photoperiodic flowering is one of the most important factors affecting regional
adaptation and yield in soybean (Glycine max). Plant adaptation to long-day
conditions at higher latitudes requires early flowering and a reduction or loss
of photoperiod sensitivity; adaptation to short-day conditions at lower latitudes
involves delayed flowering, which prolongs vegetative growth for maximum yield
potential. Due to the influence of numerous major loci and quantitative trait
loci (QTLs), soybean has broad adaptability across latitudes. Forward genetic
approaches have uncovered the molecular basis for several of these major maturity
genes and QTLs. Moreover, the molecular characterization of orthologs of
Arabidopsis thaliana flowering genes has enriched our understanding of the
photoperiodic flowering pathway in soybean. Building on early insights into the
importance of the photoreceptor phytochrome A, several circadian clock components
have been integrated into the genetic network controlling flowering in soybean:
E1, a repressor of FLOWERING LOCUS T orthologs, plays a central role in this
network. Here, we provide an overview of recent progress in elucidating
photoperiodic flowering in soybean, how it contributes to our fundamental
understanding of flowering time control, and how this information could be used
for molecular design and breeding of high-yielding soybean cultivars.
CI - (c) 2020 Institute of Botany, Chinese Academy of Sciences.
FAU - Lin, Xiaoya
AU - Lin X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, 510642, China.
FAU - Liu, Baohui
AU - Liu B
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, 510642, China.
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
FAU - Weller, James L
AU - Weller JL
AD - School of Natural Sciences, University of Tasmania, Hobart, Tasmania, 7001,
Australia.
FAU - Abe, Jun
AU - Abe J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.
FAU - Kong, Fanjiang
AU - Kong F
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, 510642, China.
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
LA - eng
GR - National Natural Science Foundation of China/
GR - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-bioresources/
PT - Journal Article
PT - Review
DEP - 20210426
PL - China (Republic : 1949- )
TA - J Integr Plant Biol
JT - Journal of integrative plant biology
JID - 101250502
SB - IM
MH - Circadian Rhythm/genetics/physiology
MH - Flowers/genetics/*physiology
MH - Gene Expression Regulation, Plant/genetics/physiology
MH - Gene Regulatory Networks/genetics/physiology
MH - *Photoperiod
MH - Plant Breeding
MH - Quantitative Trait Loci/genetics
MH - Soybeans/genetics/*physiology
OTO - NOTNLM
OT - molecular-designed breeding
OT - photoperiodic flowering
OT - soybean
EDAT- 2020/10/23 06:00
MHDA- 2021/08/05 06:00
CRDT- 2020/10/22 12:22
PHST- 2020/08/08 00:00 [received]
PHST- 2020/09/27 00:00 [accepted]
PHST- 2020/10/23 06:00 [pubmed]
PHST- 2021/08/05 06:00 [medline]
PHST- 2020/10/22 12:22 [entrez]
AID - 10.1111/jipb.13021 [doi]
PST - ppublish
SO - J Integr Plant Biol. 2021 Jun;63(6):981-994. doi: 10.1111/jipb.13021. Epub 2021
Apr 26.
##### PUB RECORD #####
## 10.1111/nph.14884 29120038 PMC5900889 Liu, Jiang et al., 2008a "Liu W, Jiang B, Ma L, Zhang S, Zhai H, Xu X, Hou W, Xia Z, Wu C, Sun S, Wu T, Chen L, Han T. Functional diversification of Flowering Locus T homologs in soybean: GmFT1a and GmFT2a/5a have opposite roles in controlling flowering and maturation. New Phytol. 2018 Feb;217(3):1335-1345. doi: 10.1111/nph.14884. Epub 2017 Nov 9. PMID: 29120038; PMCID: PMC5900889." ##
PMID- 29120038
OWN - NLM
STAT- MEDLINE
DCOM- 20191002
LR - 20200930
IS - 1469-8137 (Electronic)
IS - 0028-646X (Print)
IS - 0028-646X (Linking)
VI - 217
IP - 3
DP - 2018 Feb
TI - Functional diversification of Flowering Locus T homologs in soybean: GmFT1a and
GmFT2a/5a have opposite roles in controlling flowering and maturation.
PG - 1335-1345
LID - 10.1111/nph.14884 [doi]
AB - Soybean flowering and maturation are strictly regulated by photoperiod.
Photoperiod-sensitive soybean varieties can undergo flowering reversion when
switched from short-day (SD) to long-day (LD) conditions, suggesting the presence
of a 'floral-inhibitor' under LD conditions. We combined gene expression
profiling with a study of transgenic plants and confirmed that GmFT1a, soybean
Flowering Locus T (FT) homolog, is a floral inhibitor. GmFT1a is expressed
specifically in leaves, similar to the flowering-promoting FT homologs GmFT2a/5a.
However, in Zigongdongdou (ZGDD), a model variety for studying flowering
reversion, GmFT1a expression was induced by LD but inhibited by SD conditions.
This was unexpected, as it is the complete opposite of the expression of
flowering promoters GmFT2a/5a. Moreover, the key soybean maturity gene E1 may
up-regulate GmFT1a expression. It is also notable that GmFT1a expression was
conspicuously high in late-flowering varieties. Transgenic overexpression of
GmFT1a delayed flowering and maturation in soybean, confirming that GmFT1a
functions as a flowering inhibitor. This discovery highlights the complex impacts
of the functional diversification of the FT gene family in soybean, and implies
that antagonism between flowering-inhibiting and flowering-promoting FT homologs
in this highly photoperiod-sensitive plant may specify vegetative vs reproductive
development.
CI - (c) 2017 The Authors. New Phytologist (c) 2017 New Phytologist Trust.
FAU - Liu, Wei
AU - Liu W
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Jiang, Bingjun
AU - Jiang B
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Ma, Liming
AU - Ma L
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Zhang, Shouwei
AU - Zhang S
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Zhai, Hong
AU - Zhai H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
FAU - Xu, Xin
AU - Xu X
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Hou, Wensheng
AU - Hou W
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Xia, Zhengjun
AU - Xia Z
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
FAU - Wu, Cunxiang
AU - Wu C
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Sun, Shi
AU - Sun S
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Wu, Tingting
AU - Wu T
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Chen, Li
AU - Chen L
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Han, Tianfu
AU - Han T
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
LA - eng
SI - GENBANK/MG030499
SI - GENBANK/MG030623
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20171109
PL - England
TA - New Phytol
JT - The New phytologist
JID - 9882884
RN - 0 (Plant Proteins)
SB - IM
MH - Flowers/genetics/*physiology
MH - Gene Expression Regulation, Plant
MH - Haplotypes/genetics
MH - Models, Biological
MH - Phenotype
MH - Plant Proteins/*genetics/metabolism
MH - Plants, Genetically Modified
MH - *Sequence Homology, Amino Acid
MH - Soybeans/*genetics
MH - Transcriptome/genetics
PMC - PMC5900889
OTO - NOTNLM
OT - Flowering Locus T (FT) homolog
OT - GmFT1a
OT - flowering inhibitor
OT - maturation
OT - soybean
EDAT- 2017/11/10 06:00
MHDA- 2019/10/03 06:00
CRDT- 2017/11/10 06:00
PHST- 2017/05/01 00:00 [received]
PHST- 2017/10/03 00:00 [accepted]
PHST- 2017/11/10 06:00 [pubmed]
PHST- 2019/10/03 06:00 [medline]
PHST- 2017/11/10 06:00 [entrez]
AID - NPH14884 [pii]
AID - 10.1111/nph.14884 [doi]
PST - ppublish
SO - New Phytol. 2018 Feb;217(3):1335-1345. doi: 10.1111/nph.14884. Epub 2017 Nov 9.
##### PUB RECORD #####
## 10.1186/1471-2229-14-9 24397545 PMC3890618 Fan, Hu et al., 2014 "Fan C, Hu R, Zhang X, Wang X, Zhang W, Zhang Q, Ma J, Fu YF. Conserved CO-FT regulons contribute to the photoperiod flowering control in soybean. BMC Plant Biol. 2014 Jan 7;14:9. doi: 10.1186/1471-2229-14-9. PMID: 24397545; PMCID: PMC3890618." ##
PMID- 24397545
OWN - NLM
STAT- MEDLINE
DCOM- 20140910
LR - 20211021
IS - 1471-2229 (Electronic)
IS - 1471-2229 (Linking)
VI - 14
DP - 2014 Jan 7
TI - Conserved CO-FT regulons contribute to the photoperiod flowering control in
soybean.
PG - 9
LID - 10.1186/1471-2229-14-9 [doi]
AB - BACKGROUND: CO and FT orthologs, belonging to the BBX and PEBP family,
respectively, have important and conserved roles in the photoperiod regulation of
flowering time in plants. Soybean genome experienced at least three rounds of
whole genome duplications (WGDs), which resulted in multiple copies of about 75%
of genes. Subsequent subfunctionalization is the main fate for paralogous gene
pairs during the evolutionary process. RESULTS: The phylogenic relationships
revealed that CO orthologs were widespread in the plant kingdom while FT
orthologs were present only in angiosperms. Twenty-eight CO homologous genes and
twenty-four FT homologous genes were gained in the soybean genome. Based on the
collinear relationship, the soybean ancestral CO ortholog experienced three WGD
events, but only two paralogous gene pairs (GmCOL1/2 and GmCOL5/13) survived in
the modern soybean. The paralogous gene pairs, GmCOL1/2 or GmCOL5/13, showed
similar expression patterns in pair but different between pairs, indicating that
they functionally diverged. GmFTL1 to 7 were derived from the same ancestor prior
to the whole genome triplication (WGT) event, and after the Legume WGD event the
ancestor diverged into two branches, GmFTL3/5/7 and GmFTL1/2/4/6. GmFTL7 were
truncated in the N-terminus compared to other FT-lineage genes, but ubiquitously
expressed. Expressions of GmFTL1 to 6 were higher in leaves at the flowering
stage than that at the seedling stage. GmFTL3 was expressed at the highest level
in all tissues except roots at the seedling stage, and its circadian pattern was
different from the other five ones. The transcript of GmFTL6 was highly
accumulated in seedling roots. The circadian rhythms of GmCOL5/13 and
GmFT1/2/4/5/6 were synchronized in a day, demonstrating the complicate
relationship of CO-FT regulons in soybean leaves. Over-expression of GmCOL2 did
not rescue the flowering phenotype of the Arabidopsis co mutant. However, ectopic
expression of GmCOL5 did rescue the co mutant phenotype. All GmFTL1 to 6 showed
flower-promoting activities in Arabidopsis. CONCLUSIONS: After three recent
rounds of whole genome duplications in the soybean, the paralogous genes of CO-FT
regulons showed subfunctionalization through expression divergence. Then, only
GmCOL5/13 kept flowering-promoting activities, while GmFTL1 to 6 contributed to
flowering control. Additionally, GmCOL5/13 and GmFT1/2/3/4/5/6 showed similar
circadian expression profiles. Therefore, our results suggested that GmCOL5/13
and GmFT1/2/3/4/5/6 formed the complicate CO-FT regulons in the photoperiod
regulation of flowering time in soybean.
FAU - Fan, Chengming
AU - Fan C
FAU - Hu, Ruibo
AU - Hu R
FAU - Zhang, Xiaomei
AU - Zhang X
FAU - Wang, Xu
AU - Wang X
FAU - Zhang, Wenjing
AU - Zhang W
FAU - Zhang, Qingzhe
AU - Zhang Q
FAU - Ma, Jinhua
AU - Ma J
FAU - Fu, Yong-Fu
AU - Fu YF
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing
100081, China. fufu19cn@163.com.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140107
PL - England
TA - BMC Plant Biol
JT - BMC plant biology
JID - 100967807
RN - 0 (Plant Proteins)
SB - IM
MH - Circadian Rhythm/physiology
MH - Flowers/genetics/*metabolism
MH - Gene Duplication/genetics/physiology
MH - Photoperiod
MH - Phylogeny
MH - Plant Proteins/genetics/metabolism
MH - Soybeans/genetics/*metabolism
PMC - PMC3890618
EDAT- 2014/01/09 06:00
MHDA- 2014/09/11 06:00
CRDT- 2014/01/09 06:00
PHST- 2013/07/28 00:00 [received]
PHST- 2013/11/25 00:00 [accepted]
PHST- 2014/01/09 06:00 [entrez]
PHST- 2014/01/09 06:00 [pubmed]
PHST- 2014/09/11 06:00 [medline]
AID - 1471-2229-14-9 [pii]
AID - 10.1186/1471-2229-14-9 [doi]
PST - epublish
SO - BMC Plant Biol. 2014 Jan 7;14:9. doi: 10.1186/1471-2229-14-9.
##### PUB RECORD #####
## 10.1186/s12870-016-0704-9 26786479 PMC4719747 Zhao, Takeshima et al., 2016 "Zhao C, Takeshima R, Zhu J, Xu M, Sato M, Watanabe S, Kanazawa A, Liu B, Kong F, Yamada T, Abe J. A recessive allele for delayed flowering at the soybean maturity locus E9 is a leaky allele of FT2a, a FLOWERING LOCUS T ortholog. BMC Plant Biol. 2016 Jan 19;16:20. doi: 10.1186/s12870-016-0704-9. PMID: 26786479; PMCID: PMC4719747." ##
PMID- 26786479
OWN - NLM
STAT- MEDLINE
DCOM- 20160906
LR - 20220330
IS - 1471-2229 (Electronic)
IS - 1471-2229 (Linking)
VI - 16
DP - 2016 Jan 19
TI - A recessive allele for delayed flowering at the soybean maturity locus E9 is a
leaky allele of FT2a, a FLOWERING LOCUS T ortholog.
PG - 20
LID - 10.1186/s12870-016-0704-9 [doi]
LID - 20
AB - BACKGROUND: Understanding the molecular mechanisms of flowering and maturity is
important for improving the adaptability and yield of seed crops in different
environments. In soybean, a facultative short-day plant, genetic variation at
four maturity genes, E1 to E4, plays an important role in adaptation to
environments with different photoperiods. However, the molecular basis of natural
variation in time to flowering and maturity is poorly understood. Using a cross
between early-maturing soybean cultivars, we performed a genetic and molecular
study of flowering genes. The progeny of this cross segregated for two maturity
loci, E1 and E9. The latter locus was subjected to detailed molecular analysis to
identify the responsible gene. RESULTS: Fine mapping, sequencing, and expression
analysis revealed that E9 is FT2a, an ortholog of Arabidopsis FLOWERING LOCUS T.
Regardless of daylength conditions, the e9 allele was transcribed at a very low
level in comparison with the E9 allele and delayed flowering. Despite identical
coding sequences, a number of single nucleotide polymorphisms and
insertions/deletions were detected in the promoter, untranslated regions, and
introns between the two cultivars. Furthermore, the e9 allele had a
Ty1/copia-like retrotransposon, SORE-1, inserted in the first intron. Comparison
of the expression levels of different alleles among near-isogenic lines and
photoperiod-insensitive cultivars indicated that the SORE-1 insertion attenuated
FT2a expression by its allele-specific transcriptional repression. SORE-1 was
highly methylated, and did not appear to disrupt FT2a RNA processing.
CONCLUSIONS: The soybean maturity gene E9 is FT2a, and its recessive allele
delays flowering because of lower transcript abundance that is caused by
allele-specific transcriptional repression due to the insertion of SORE-1. The
FT2a transcript abundance is thus directly associated with the variation in
flowering time in soybean. The e9 allele may maintain vegetative growth in
early-flowering genetic backgrounds, and also be useful as a long-juvenile
allele, which causes late flowering under short-daylength conditions, in
low-latitude regions.
FAU - Zhao, Chen
AU - Zhao C
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. zhaochen_1112@126.com.
FAU - Takeshima, Ryoma
AU - Takeshima R
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. take-ryo@res.agr.hokudai.ac.jp.
FAU - Zhu, Jianghui
AU - Zhu J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. zhu622@res.agr.hokudai.ac.jp.
FAU - Xu, Meilan
AU - Xu M
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
xumeilan_1984@yahoo.co.jp.
FAU - Sato, Masako
AU - Sato M
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. satomasa@res.agr.hokudai.ac.jp.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - Faculty of Agriculture, Saga University, Saga, 840-0027, Japan.
nabemame@cc.saga-u.ac.jp.
FAU - Kanazawa, Akira
AU - Kanazawa A
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. kanazawa@res.agr.hokudai.ac.jp.
FAU - Liu, Baohui
AU - Liu B
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
liubh@neigaehrb.ac.cn.
FAU - Kong, Fanjiang
AU - Kong F
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
kongfj@iga.ac.cn.
FAU - Yamada, Tetsuya
AU - Yamada T
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. tetsuyay@res.agr.hokudai.ac.jp.
FAU - Abe, Jun
AU - Abe J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. jabe@res.agr.hokudai.ac.jp.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20160119
PL - England
TA - BMC Plant Biol
JT - BMC plant biology
JID - 100967807
SB - IM
MH - Alleles
MH - Flowers/*genetics/growth & development
MH - *Genes, Plant
MH - Genes, Recessive
MH - Soybeans/*genetics/growth & development
PMC - PMC4719747
EDAT- 2016/01/21 06:00
MHDA- 2016/09/07 06:00
CRDT- 2016/01/21 06:00
PHST- 2015/10/16 00:00 [received]
PHST- 2016/01/06 00:00 [accepted]
PHST- 2016/01/21 06:00 [entrez]
PHST- 2016/01/21 06:00 [pubmed]
PHST- 2016/09/07 06:00 [medline]
AID - 10.1186/s12870-016-0704-9 [pii]
AID - 704 [pii]
AID - 10.1186/s12870-016-0704-9 [doi]
PST - epublish
SO - BMC Plant Biol. 2016 Jan 19;16:20. doi: 10.1186/s12870-016-0704-9.
##### PUB RECORD #####
## 10.1371/journal.pone.0089030 24586488 PMC3929636 Zhai et al., 2014 "Zhai H, Lü S, Liang S, Wu H, Zhang X, Liu B, Kong F, Yuan X, Li J, Xia Z. GmFT4, a homolog of FLOWERING LOCUS T, is positively regulated by E1 and functions as a flowering repressor in soybean. PLoS One. 2014 Feb 19;9(2):e89030. doi: 10.1371/journal.pone.0089030. PMID: 24586488; PMCID: PMC3929636." ##
PMID- 24586488
OWN - NLM
STAT- MEDLINE
DCOM- 20150110
LR - 20220409
IS - 1932-6203 (Electronic)
IS - 1932-6203 (Linking)
VI - 9
IP - 2
DP - 2014
TI - GmFT4, a homolog of FLOWERING LOCUS T, is positively regulated by E1 and
functions as a flowering repressor in soybean.
PG - e89030
LID - 10.1371/journal.pone.0089030 [doi]
LID - e89030
AB - The major maturity gene E1 has the most prominent effect on flowering time and
photoperiod sensitivity of soybean, but the pathway mediated by E1 is largely
unknown. Here, we found the expression of GmFT4, a homolog of Flowering Locus T,
was strongly up-regulated in transgenic soybean overexpressing E1, whereas
expression of flowering activators, GmFT2a and GmFT5a, was suppressed. GmFT4
expression was strongly up-regulated by long days exhibiting a diurnal rhythm,
but down-regulated by short days. Notably, the basal expression level of GmFT4
was elevated when transferred to continous light, whereas repressed when
transferred to continuous dark. GmFT4 was primarily expressed in fully expanded
leaves. Transcript abundance of GmFT4 was significantly correlated with that of
functional E1, as well as flowering time phenotype in different cultivars.
Overexpression of GmFT4 delayed the flowering time in transgenic Arabidopsis.
Taken together, we propose that GmFT4 acts downstream of E1 and functions as a
flowering repressor, and the balance of two antagonistic factors (GmFT4 vs
GmFT2a/5a) determines the flowering time of soybean.
FAU - Zhai, Hong
AU - Zhai H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Lu, Shixiang
AU - Lu S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Liang, Shuang
AU - Liang S
AD - College of Life Science, Northeast Agricultural University, Harbin, Heilongjiang,
China.
FAU - Wu, Hongyan
AU - Wu H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Zhang, Xingzheng
AU - Zhang X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Liu, Baohui
AU - Liu B
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Kong, Fanjiang
AU - Kong F
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Yuan, Xiaohui
AU - Yuan X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Li, Jing
AU - Li J
AD - College of Life Science, Northeast Agricultural University, Harbin, Heilongjiang,
China.
FAU - Xia, Zhengjun
AU - Xia Z
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140219
PL - United States
TA - PLoS One
JT - PloS one
JID - 101285081
RN - 0 (Arabidopsis Proteins)
RN - 0 (FT protein, Arabidopsis)
RN - 0 (Plant Proteins)
RN - 0 (Repressor Proteins)
RN - 0 (Transcription Factors)
SB - IM
MH - Amino Acid Sequence
MH - Arabidopsis/genetics
MH - Arabidopsis Proteins/genetics
MH - Flowers/*genetics
MH - Gene Expression Regulation, Plant
MH - Molecular Sequence Data
MH - Phylogeny
MH - Plant Proteins/*genetics
MH - Plants, Genetically Modified
MH - Repressor Proteins/*genetics
MH - Sequence Homology
MH - Soybeans/*genetics
MH - Transcription Factors/*genetics
PMC - PMC3929636
COIS- Competing Interests: The authors have declared that no competing interests exist.
EDAT- 2014/03/04 06:00
MHDA- 2015/01/13 06:00
CRDT- 2014/03/04 06:00
PHST- 2013/09/14 00:00 [received]
PHST- 2014/01/19 00:00 [accepted]
PHST- 2014/03/04 06:00 [entrez]
PHST- 2014/03/04 06:00 [pubmed]
PHST- 2015/01/13 06:00 [medline]
AID - PONE-D-13-37961 [pii]
AID - 10.1371/journal.pone.0089030 [doi]
PST - epublish
SO - PLoS One. 2014 Feb 19;9(2):e89030. doi: 10.1371/journal.pone.0089030. eCollection
2014.
##### PUB RECORD #####
## 10.1371/journal.pone.0097669 24845624 PMC4028237 Nan, Cao et al., 2014 "Nan H, Cao D, Zhang D, Li Y, Lu S, Tang L, Yuan X, Liu B, Kong F. GmFT2a and GmFT5a redundantly and differentially regulate flowering through interaction with and upregulation of the bZIP transcription factor GmFDL19 in soybean. PLoS One. 2014 May 20;9(5):e97669. doi: 10.1371/journal.pone.0097669. PMID: 24845624; PMCID: PMC4028237." ##
PMID- 24845624
OWN - NLM
STAT- MEDLINE
DCOM- 20150212
LR - 20211021
IS - 1932-6203 (Electronic)
IS - 1932-6203 (Linking)
VI - 9
IP - 5
DP - 2014
TI - GmFT2a and GmFT5a redundantly and differentially regulate flowering through
interaction with and upregulation of the bZIP transcription factor GmFDL19 in
soybean.
PG - e97669
LID - 10.1371/journal.pone.0097669 [doi]
LID - e97669
AB - FLOWERING LOCUS T (FT) is the key flowering integrator in Arabidopsis
(Arabidopsis thaliana), and its homologs encode florigens in many plant species
regardless of their photoperiodic response. Two FT homologs, GmFT2a and GmFT5a,
are involved in photoperiod-regulated flowering and coordinately control
flowering in soybean. However, the molecular and genetic understanding of the
roles played by GmFT2a and GmFT5a in photoperiod-regulated flowering in soybean
is very limited. In this study, we demonstrated that GmFT2a and GmFT5a were able
to promote early flowering in soybean by overexpressing these two genes in the
soybean cultivar Williams 82 under noninductive long-day (LD) conditions. The
soybean homologs of several floral identity genes, such as GmAP1, GmSOC1 and
GmLFY, were significantly upregulated by GmFT2a and GmFT5a in a redundant and
differential pattern. A bZIP transcription factor, GmFDL19, was identified as
interacting with both GmFT2a and GmFT5a, and this interaction was confirmed by
yeast two-hybridization and bimolecular fluorescence complementation (BiFC). The
overexpression of GmFDL19 in soybean caused early flowering, and the
transcription levels of the flowering identity genes were also upregulated by
GmFDL19, as was consistent with the upregulation of GmFT2a and GmFT5a. The
transcription of GmFDL19 was also induced by GmFT2a. The results of the
electrophoretic mobility shift assay (EMSA) indicated that GmFDL19 was able to
bind with the cis-elements in the promoter of GmAP1a. Taken together, our results
suggest that GmFT2a and GmFT5a redundantly and differentially control
photoperiod-regulated flowering in soybean through both physical interaction with
and transcriptional upregulation of the bZIP transcription factor GmFDL19,
thereby inducing the expression of floral identity genes.
FAU - Nan, Haiyang
AU - Nan H
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China;
University of Chinese Academy of Sciences, Beijing, China.
FAU - Cao, Dong
AU - Cao D
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Zhang, Dayong
AU - Zhang D
AD - Institute of Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing,
China.
FAU - Li, Ying
AU - Li Y
AD - State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry
University, Harbin, China.
FAU - Lu, Sijia
AU - Lu S
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China;
University of Chinese Academy of Sciences, Beijing, China.
FAU - Tang, Lili
AU - Tang L
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Yuan, Xiaohui
AU - Yuan X
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Liu, Baohui
AU - Liu B
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Kong, Fanjiang
AU - Kong F
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140520
PL - United States
TA - PLoS One
JT - PloS one
JID - 101285081
RN - 0 (Plant Proteins)
RN - 0 (Transcription Factors)
SB - IM
MH - Flowers/genetics/*metabolism
MH - Gene Expression Regulation, Plant/*physiology
MH - Plant Proteins/genetics/*metabolism
MH - Soybeans/genetics/*metabolism
MH - Transcription Factors/genetics/*metabolism
MH - Up-Regulation/*physiology
PMC - PMC4028237
COIS- Competing Interests: The authors have declared that no competing interests exist.
EDAT- 2014/05/23 06:00
MHDA- 2015/02/13 06:00
CRDT- 2014/05/22 06:00
PHST- 2014/03/20 00:00 [received]
PHST- 2014/04/14 00:00 [accepted]
PHST- 2014/05/22 06:00 [entrez]
PHST- 2014/05/23 06:00 [pubmed]
PHST- 2015/02/13 06:00 [medline]
AID - PONE-D-14-12622 [pii]
AID - 10.1371/journal.pone.0097669 [doi]
PST - epublish
SO - PLoS One. 2014 May 20;9(5):e97669. doi: 10.1371/journal.pone.0097669. eCollection
2014.
##### PUB RECORD #####
## 10.1371/journal.pone.0136601 26371882 PMC4570765 Guo, Xu et al., 2015 "Guo G, Xu K, Zhang X, Zhu J, Lu M, Chen F, Liu L, Xi ZY, Bachmair A, Chen Q, Fu YF. Extensive Analysis of GmFTL and GmCOL Expression in Northern Soybean Cultivars in Field Conditions. PLoS One. 2015 Sep 15;10(9):e0136601. doi: 10.1371/journal.pone.0136601. PMID: 26371882; PMCID: PMC4570765." ##
PMID- 26371882
OWN - NLM
STAT- MEDLINE
DCOM- 20160519
LR - 20181113
IS - 1932-6203 (Electronic)
IS - 1932-6203 (Linking)
VI - 10
IP - 9
DP - 2015
TI - Extensive Analysis of GmFTL and GmCOL Expression in Northern Soybean Cultivars in
Field Conditions.
PG - e0136601
LID - 10.1371/journal.pone.0136601 [doi]
LID - e0136601
AB - The FLOWERING LOCUS T (FT) gene is a highly conserved florigen gene among
flowering plants. Soybean genome encodes six homologs of FT, which display
flowering activity in Arabidopsis thaliana. However, their contributions to
flowering time in different soybean cultivars, especially in field conditions,
are unclear. We employed six soybean cultivars with different maturities to
extensively investigate expression patterns of GmFTLs (Glycine max FT-like) and
GmCOLs (Glycine max CO-like) in the field conditions. The results show that
GmFTL3 is an FT homolog with the highest transcript abundance in soybean, but
other GmFTLs may also contribute to flower induction with different extents,
because they have more or less similar expression patterns in developmental-,
leaf-, and circadian-specific modes. And four GmCOL genes (GmCOL1/2/5/13) may
confer to the expression of GmFTL genes. Artificial manipulation of GmFTL
expression by transgenic strategy (overexpression and RNAi) results in a distinct
change in soybean flowering time, indicating that GmFTLs not only impact on the
control of flowering time, but have potential applications in the manipulation of
photoperiodic adaptation in soybean. Additionally, transgenic plants show that
GmFTLs play a role in formation of the first flowers and in vegetative growth.
FAU - Guo, Guangyu
AU - Guo G
AD - College of Agriculture, Northeast Agricultural University, Harbin, China.
FAU - Xu, Kun
AU - Xu K
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China; Graduate School of Chinese Academy of Agricultural Sciences, Beijing,
China.
FAU - Zhang, Xiaomei
AU - Zhang X
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Zhu, Jinlong
AU - Zhu J
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Lu, Mingyang
AU - Lu M
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China; Graduate School of Chinese Academy of Agricultural Sciences, Beijing,
China.
FAU - Chen, Fulu
AU - Chen F
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Liu, Linpo
AU - Liu L
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Xi, Zhang-Ying
AU - Xi ZY
AD - College of Agronomy, Henan Agricultural University, Zhengzhou, China.
FAU - Bachmair, Andreas
AU - Bachmair A
AD - Dept. of Biochemistry and Cell Biology, Max F. Perutz Laboratories, University of
Vienna, Vienna Biocenter, Dr. Bohr Gasse 9, A-1030 Vienna, Austria.
FAU - Chen, Qingshan
AU - Chen Q
AD - College of Agriculture, Northeast Agricultural University, Harbin, China.
FAU - Fu, Yong-Fu
AU - Fu YF
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20150915
PL - United States
TA - PLoS One
JT - PloS one
JID - 101285081
RN - 0 (Plant Proteins)
RN - 0 (Transcription Factors)
SB - IM
MH - Arabidopsis/genetics/metabolism
MH - Flowers/genetics/*metabolism
MH - Gene Expression Regulation, Plant/*physiology
MH - Plant Proteins/*biosynthesis/genetics
MH - Soybeans/genetics/*metabolism
MH - Transcription Factors/genetics/*metabolism
PMC - PMC4570765
COIS- Competing Interests: The authors have declared that no competing interests exist.
EDAT- 2015/09/16 06:00
MHDA- 2016/05/20 06:00
CRDT- 2015/09/16 06:00
PHST- 2015/04/28 00:00 [received]
PHST- 2015/08/06 00:00 [accepted]
PHST- 2015/09/16 06:00 [entrez]
PHST- 2015/09/16 06:00 [pubmed]
PHST- 2016/05/20 06:00 [medline]
AID - PONE-D-15-18351 [pii]
AID - 10.1371/journal.pone.0136601 [doi]
PST - epublish
SO - PLoS One. 2015 Sep 15;10(9):e0136601. doi: 10.1371/journal.pone.0136601.
eCollection 2015.
##### PUB RECORD #####
## 10.1534/genetics.108.098772 19474204 PMC2728863 Watanabe, Hideshima et al., 2009 "Watanabe S, Hideshima R, Xia Z, Tsubokura Y, Sato S, Nakamoto Y, Yamanaka N, Takahashi R, Ishimoto M, Anai T, Tabata S, Harada K. Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics. 2009 Aug;182(4):1251-62. doi: 10.1534/genetics.108.098772. Epub 2009 May 27. PMID: 19474204; PMCID: PMC2728863." ##
PMID- 19474204
OWN - NLM
STAT- MEDLINE
DCOM- 20100201
LR - 20220330
IS - 1943-2631 (Electronic)
IS - 0016-6731 (Print)
IS - 0016-6731 (Linking)
VI - 182
IP - 4
DP - 2009 Aug
TI - Map-based cloning of the gene associated with the soybean maturity locus E3.
PG - 1251-62
LID - 10.1534/genetics.108.098772 [doi]
AB - Photosensitivity plays an essential role in the response of plants to their
changing environments throughout their life cycle. In soybean [Glycine max (L.)
Merrill], several associations between photosensitivity and maturity loci are
known, but only limited information at the molecular level is available. The FT3
locus is one of the quantitative trait loci (QTL) for flowering time that
corresponds to the maturity locus E3. To identify the gene responsible for this
QTL, a map-based cloning strategy was undertaken. One phytochrome A gene
(GmPhyA3) was considered a strong candidate for the FT3 locus. Allelism tests and
gene sequence comparisons showed that alleles of Misuzudaizu (FT3/FT3; JP28856)
and Harosoy (E3/E3; PI548573) were identical. The GmPhyA3 alleles of Moshidou
Gong 503 (ft3/ft3; JP27603) and L62-667 (e3/e3; PI547716) showed weak or complete
loss of function, respectively. High red/far-red (R/FR) long-day conditions
enhanced the effects of the E3/FT3 alleles in various genetic backgrounds.
Moreover, a mutant line harboring the nonfunctional GmPhyA3 flowered earlier than
the original Bay (E3/E3; PI553043) under similar conditions. These results
suggest that the variation in phytochrome A may contribute to the complex systems
of soybean flowering response and geographic adaptation.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.
FAU - Hideshima, Rumiko
AU - Hideshima R
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Tsubokura, Yasutaka
AU - Tsubokura Y
FAU - Sato, Shusei
AU - Sato S
FAU - Nakamoto, Yumi
AU - Nakamoto Y
FAU - Yamanaka, Naoki
AU - Yamanaka N
FAU - Takahashi, Ryoji
AU - Takahashi R
FAU - Ishimoto, Masao
AU - Ishimoto M
FAU - Anai, Toyoaki
AU - Anai T
FAU - Tabata, Satoshi
AU - Tabata S
FAU - Harada, Kyuya
AU - Harada K
LA - eng
SI - GENBANK/AB462634
SI - GENBANK/AB462635
SI - GENBANK/AB462636
SI - GENBANK/AB462637
SI - GENBANK/AB462638
SI - GENBANK/AB462639
SI - GENBANK/AB462640
SI - GENBANK/AB462641
SI - GENBANK/AB465249
SI - GENBANK/AB465250
SI - GENBANK/AB465251
SI - GENBANK/AB465252
SI - GENBANK/AB465253
SI - GENBANK/AB465254
SI - GENBANK/AB465255
SI - GENBANK/AB465256
SI - GENBANK/AB465257
SI - GENBANK/AB465258
SI - GENBANK/AB468152
SI - GENBANK/AB468153
SI - GENBANK/AB468154
SI - GENBANK/AB468155
SI - GENBANK/AP010916
SI - GENBANK/AP010917
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20090527
PL - United States
TA - Genetics
JT - Genetics
JID - 0374636
RN - 0 (Phytochrome A)
SB - IM
MH - Alleles
MH - Base Sequence
MH - Cloning, Molecular/*methods
MH - Flowers/genetics
MH - Genes, Plant/*genetics
MH - Molecular Sequence Data
MH - Phytochrome A/*genetics
MH - *Quantitative Trait Loci
MH - Soybeans/*genetics
PMC - PMC2728863
EDAT- 2009/05/29 09:00
MHDA- 2010/02/02 06:00
CRDT- 2009/05/29 09:00
PHST- 2009/05/29 09:00 [entrez]
PHST- 2009/05/29 09:00 [pubmed]
PHST- 2010/02/02 06:00 [medline]
AID - genetics.108.098772 [pii]
AID - gen18241251 [pii]
AID - 10.1534/genetics.108.098772 [doi]
PST - ppublish
SO - Genetics. 2009 Aug;182(4):1251-62. doi: 10.1534/genetics.108.098772. Epub 2009
May 27.
##### PUB RECORD #####
## 10.1534/genetics.110.125062 21406680 PMC3122305 Watanabe, Xia et al., 2011 "Watanabe S, Xia Z, Hideshima R, Tsubokura Y, Sato S, Yamanaka N, Takahashi R, Anai T, Tabata S, Kitamura K, Harada K. A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics. 2011 Jun;188(2):395-407. doi: 10.1534/genetics.110.125062. Epub 2011 Mar 15. PMID: 21406680; PMCID: PMC3122305." ##
PMID- 21406680
OWN - NLM
STAT- MEDLINE
DCOM- 20111020
LR - 20220420
IS - 1943-2631 (Electronic)
IS - 0016-6731 (Print)
IS - 0016-6731 (Linking)
VI - 188
IP - 2
DP - 2011 Jun
TI - A map-based cloning strategy employing a residual heterozygous line reveals that
the GIGANTEA gene is involved in soybean maturity and flowering.
PG - 395-407
LID - 10.1534/genetics.110.125062 [doi]
AB - Flowering is indicative of the transition from vegetative to reproductive phase,
a critical event in the life cycle of plants. In soybean (Glycine max), a
flowering quantitative trait locus, FT2, corresponding to the maturity locus E2,
was detected in recombinant inbred lines (RILs) derived from the varieties
"Misuzudaizu" (ft2/ft2; JP28856) and "Moshidou Gong 503" (FT2/FT2; JP27603). A
map-based cloning strategy using the progeny of a residual heterozygous line
(RHL) from the RIL was employed to isolate the gene responsible for this
quantitative trait locus. A GIGANTEA ortholog, GmGIa (Glyma10g36600), was
identified as a candidate gene. A common premature stop codon at the 10th exon
was present in the Misuzudaizu allele and in other near isogenic lines (NILs)
originating from Harosoy (e2/e2; PI548573). Furthermore, a mutant line harboring
another premature stop codon showed an earlier flowering phenotype than the
original variety, Bay (E2/E2; PI553043). The e2/e2 genotype exhibited elevated
expression of GmFT2a, one of the florigen genes that leads to early flowering.
The effects of the E2 allele on flowering time were similar among NILs and
constant under high (43 degrees N) and middle (36 degrees N) latitudinal regions in Japan. These
results indicate that GmGIa is the gene responsible for the E2 locus and that a
null mutation in GmGIa may contribute to the geographic adaptation of soybean.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Hideshima, Rumiko
AU - Hideshima R
FAU - Tsubokura, Yasutaka
AU - Tsubokura Y
FAU - Sato, Shusei
AU - Sato S
FAU - Yamanaka, Naoki
AU - Yamanaka N
FAU - Takahashi, Ryoji
AU - Takahashi R
FAU - Anai, Toyoaki
AU - Anai T
FAU - Tabata, Satoshi
AU - Tabata S
FAU - Kitamura, Keisuke
AU - Kitamura K
FAU - Harada, Kyuya
AU - Harada K
LA - eng
SI - GENBANK/AB554196
SI - GENBANK/AB554197
SI - GENBANK/AB554198
SI - GENBANK/AB554199
SI - GENBANK/AB554200
SI - GENBANK/AB554201
SI - GENBANK/AB554202
SI - GENBANK/AB554203
SI - GENBANK/AB554204
SI - GENBANK/AB554205
SI - GENBANK/AB554206
SI - GENBANK/AB554207
SI - GENBANK/AB554208
SI - GENBANK/AB554209
SI - GENBANK/AB554210
SI - GENBANK/AB554211
SI - GENBANK/AB554212
SI - GENBANK/AB554213
SI - GENBANK/AB554214
SI - GENBANK/AB554215
SI - GENBANK/AB554216
SI - GENBANK/AB554217
SI - GENBANK/AB554218
SI - GENBANK/AB554219
SI - GENBANK/AB554220
SI - GENBANK/AB554221
SI - GENBANK/AB554222
SI - GENBANK/AP011810
SI - GENBANK/AP011811
SI - GENBANK/AP011813
SI - GENBANK/AP011821
SI - GENBANK/AP011822
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20110315
PL - United States
TA - Genetics
JT - Genetics
JID - 0374636
RN - 0 (DNA, Plant)
RN - 0 (Plant Proteins)
RN - 0 (Soybean Proteins)
SB - IM
MH - Acclimatization/genetics
MH - Altitude
MH - Amplified Fragment Length Polymorphism Analysis
MH - Chromosome Mapping
MH - Chromosomes, Plant/genetics
MH - Cloning, Molecular/*methods
MH - DNA, Plant/chemistry/genetics
MH - Flowers/*genetics/growth & development
MH - Gene Expression Regulation, Developmental
MH - Gene Expression Regulation, Plant
MH - Heterozygote
MH - Lod Score
MH - Molecular Sequence Data
MH - Mutation
MH - Phylogeny
MH - Plant Proteins/classification/*genetics
MH - Quantitative Trait Loci/genetics
MH - Reverse Transcriptase Polymerase Chain Reaction
MH - Sequence Analysis, DNA
MH - Soybean Proteins/genetics
MH - Soybeans/*genetics/growth & development
MH - Time Factors
PMC - PMC3122305
EDAT- 2011/03/17 06:00
MHDA- 2011/10/21 06:00
CRDT- 2011/03/17 06:00
PHST- 2011/03/17 06:00 [entrez]
PHST- 2011/03/17 06:00 [pubmed]
PHST- 2011/10/21 06:00 [medline]
AID - genetics.110.125062 [pii]
AID - 125062 [pii]
AID - 10.1534/genetics.110.125062 [doi]
PST - ppublish
SO - Genetics. 2011 Jun;188(2):395-407. doi: 10.1534/genetics.110.125062. Epub 2011
Mar 15.
##### PUB RECORD #####
## 10.3389/fpls.2019.01221 31787988 PMC6856076 Wu, Kang et al., 2019 "Wu F, Kang X, Wang M, Haider W, Price WB, Hajek B, Hanzawa Y. Transcriptome-Enabled Network Inference Revealed the GmCOL1 Feed-Forward Loop and Its Roles in Photoperiodic Flowering of Soybean. Front Plant Sci. 2019 Nov 8;10:1221. doi: 10.3389/fpls.2019.01221. PMID: 31787988; PMCID: PMC6856076." ##
PMID- 31787988
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20201001
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 10
DP - 2019
TI - Transcriptome-Enabled Network Inference Revealed the GmCOL1 Feed-Forward Loop and
Its Roles in Photoperiodic Flowering of Soybean.
PG - 1221
LID - 10.3389/fpls.2019.01221 [doi]
LID - 1221
AB - Photoperiodic flowering, a plant response to seasonal photoperiod changes in the
control of reproductive transition, is an important agronomic trait that has been
a central target of crop domestication and modern breeding programs. However, our
understanding about the molecular mechanisms of photoperiodic flowering
regulation in crop species is lagging behind. To better understand the regulatory
gene networks controlling photoperiodic flowering of soybeans, we elucidated
global gene expression patterns under different photoperiod regimes using the
near isogenic lines (NILs) of maturity loci (E loci). Transcriptome signatures
identified the unique roles of the E loci in photoperiodic flowering and a set of
genes controlled by these loci. To elucidate the regulatory gene networks
underlying photoperiodic flowering regulation, we developed the network inference
algorithmic package CausNet that integrates sparse linear regression and Granger
causality heuristics, with Gaussian approximation of bootstrapping to provide
reliability scores for predicted regulatory interactions. Using the transcriptome
data, CausNet inferred regulatory interactions among soybean flowering genes.
Published reports in the literature provided empirical verification for several
of CausNet's inferred regulatory interactions. We further confirmed the inferred
regulatory roles of the flowering suppressors GmCOL1a and GmCOL1b using GmCOL1
RNAi transgenic soybean plants. Combinations of the alleles of GmCOL1 and the
major maturity locus E1 demonstrated positive interaction between these genes,
leading to enhanced suppression of flowering transition. Our work provides novel
insights and testable hypotheses in the complex molecular mechanisms of
photoperiodic flowering control in soybean and lays a framework for de novo
prediction of biological networks controlling important agronomic traits in
crops.
CI - Copyright (c) 2019 Wu, Kang, Wang, Haider, Price, Hajek and Hanzawa.
FAU - Wu, Faqiang
AU - Wu F
AD - Department of Biology, California State University, Northridge, CA, United
States.
FAU - Kang, Xiaohan
AU - Kang X
AD - Department of Electrical Computer Engineering, University of Illinois at
Urbana-Champaign, Champaign, IL, United States.
FAU - Wang, Minglei
AU - Wang M
AD - Department of Crop Sciences, University of Illinois at Urbana-Champaign,
Champaign, IL, United States.
FAU - Haider, Waseem
AU - Haider W
AD - Department of Biosciences, COMSATS University Islamabad, Pakistan.
FAU - Price, William B
AU - Price WB
AD - Department of Electrical Computer Engineering, University of Illinois at
Urbana-Champaign, Champaign, IL, United States.
FAU - Hajek, Bruce
AU - Hajek B
AD - Department of Crop Sciences, University of Illinois at Urbana-Champaign,
Champaign, IL, United States.
FAU - Hanzawa, Yoshie
AU - Hanzawa Y
AD - Department of Biology, California State University, Northridge, CA, United
States.
LA - eng
PT - Journal Article
DEP - 20191108
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC6856076
OTO - NOTNLM
OT - Glycine max
OT - feedforward loop
OT - network inference
OT - photoperiodic flowering
OT - transcriptome
EDAT- 2019/12/04 06:00
MHDA- 2019/12/04 06:01
CRDT- 2019/12/03 06:00
PHST- 2019/06/21 00:00 [received]
PHST- 2019/09/04 00:00 [accepted]
PHST- 2019/12/03 06:00 [entrez]
PHST- 2019/12/04 06:00 [pubmed]
PHST- 2019/12/04 06:01 [medline]
AID - 10.3389/fpls.2019.01221 [doi]
PST - epublish
SO - Front Plant Sci. 2019 Nov 8;10:1221. doi: 10.3389/fpls.2019.01221. eCollection
2019.
##### PUB RECORD #####
## 10.3389/fpls.2021.632754 33995435 PMC8113421 Xia, Zhai et al., 2012 "Xia Z, Zhai H, Wu H, Xu K, Watanabe S, Harada K. The Synchronized Efforts to Decipher the Molecular Basis for Soybean Maturity Loci E1, E2, and E3 That Regulate Flowering and Maturity. Front Plant Sci. 2021 Apr 28;12:632754. doi: 10.3389/fpls.2021.632754. PMID: 33995435; PMCID: PMC8113421." ##
PMID- 33995435
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20210518
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 12
DP - 2021
TI - The Synchronized Efforts to Decipher the Molecular Basis for Soybean Maturity
Loci E1, E2, and E3 That Regulate Flowering and Maturity.
PG - 632754
LID - 10.3389/fpls.2021.632754 [doi]
LID - 632754
AB - The general concept of photoperiodism, i.e., the photoperiodic induction of
flowering, was established by Garner and Allard (1920). The genetic factor
controlling flowering time, maturity, or photoperiodic responses was observed in
soybean soon after the discovery of the photoperiodism. E1, E2, and E3 were named
in 1971 and, thereafter, genetically characterized. At the centennial celebration
of the discovery of photoperiodism in soybean, we recount our endeavors to
successfully decipher the molecular bases for the major maturity loci E1, E2, and
E3 in soybean. Through systematic efforts, we successfully cloned the E3 gene in
2009, the E2 gene in 2011, and the E1 gene in 2012. Recently, successful
identification of several circadian-related genes such as PRR3a, LUX, and J has
enriched the known major E1-FTs pathway. Further research progresses on the
identification of new flowering and maturity-related genes as well as coordinated
regulation between flowering genes will enable us to understand profoundly
flowering gene network and determinants of latitudinal adaptation in soybean.
CI - Copyright (c) 2021 Xia, Zhai, Wu, Xu, Watanabe and Harada.
FAU - Xia, Zhengjun
AU - Xia Z
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Zhai, Hong
AU - Zhai H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Wu, Hongyan
AU - Wu H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Xu, Kun
AU - Xu K
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - Faculty of Agriculture, Saga University, Saga, Japan.
FAU - Harada, Kyuya
AU - Harada K
AD - Department of Biotechnology, Graduate School of Engineering, Osaka University,
Suita, Japan.
LA - eng
PT - Journal Article
PT - Review
DEP - 20210428
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC8113421
OTO - NOTNLM
OT - E1
OT - flowering time
OT - maturity
OT - photoperiodic response
OT - positional cloning
OT - soybean
COIS- The authors declare that the research was conducted in the absence of any
commercial or financial relationships that could be construed as a potential
conflict of interest.
EDAT- 2021/05/18 06:00
MHDA- 2021/05/18 06:01
CRDT- 2021/05/17 06:04
PHST- 2020/11/24 00:00 [received]
PHST- 2021/03/02 00:00 [accepted]
PHST- 2021/05/17 06:04 [entrez]
PHST- 2021/05/18 06:00 [pubmed]
PHST- 2021/05/18 06:01 [medline]
AID - 10.3389/fpls.2021.632754 [doi]
PST - epublish
SO - Front Plant Sci. 2021 Apr 28;12:632754. doi: 10.3389/fpls.2021.632754.
eCollection 2021.
##### PUB RECORD #####
## 10.3389/fpls.2022.889066 35574141 PMC9100572 Dietz, Chan et al., 2023 "Dietz N, Chan YO, Scaboo A, Graef G, Hyten D, Happ M, Diers B, Lorenz A, Wang D, Joshi T, Bilyeu K. Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution. Front Plant Sci. 2022 Apr 29;13:889066. doi: 10.3389/fpls.2022.889066. PMID: 35574141; PMCID: PMC9100572." ##
PMID- 35574141
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20220519
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 13
DP - 2022
TI - Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines
Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent
Latitude Distribution.
PG - 889066
LID - 10.3389/fpls.2022.889066 [doi]
LID - 889066
AB - Adaptation of soybean cultivars to the photoperiod in which they are grown is
critical for optimizing plant yield. However, despite its importance, only the
major loci conferring variation in flowering time and maturity of US soybean have
been isolated. By contrast, over 200 genes contributing to floral induction in
the model organism Arabidopsis thaliana have been described. In this work,
putative alleles of a library of soybean orthologs of these Arabidopsis flowering
genes were tested for their latitudinal distribution among elite US soybean lines
developed in the United States. Furthermore, variants comprising the alleles of
genes with significant differences in latitudinal distribution were assessed for
amino acid conservation across disparate genera to infer their impact on gene
function. From these efforts, several candidate genes from various biological
pathways were identified that are likely being exploited toward adaptation of US
soybean to various maturity groups.
CI - Copyright (c) 2022 Dietz, Chan, Scaboo, Graef, Hyten, Happ, Diers, Lorenz, Wang,
Joshi and Bilyeu.
FAU - Dietz, Nicholas
AU - Dietz N
AD - Division of Plant Science and Technology, University of Missouri, Columbia, MO,
United States.
FAU - Chan, Yen On
AU - Chan YO
AD - Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO,
United States.
AD - MU Data Science and Informatics Institute, University of Missouri, Columbia, MO,
United States.
FAU - Scaboo, Andrew
AU - Scaboo A
AD - Division of Plant Science and Technology, University of Missouri, Columbia, MO,
United States.
FAU - Graef, George
AU - Graef G
AD - Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE,
United States.
FAU - Hyten, David
AU - Hyten D
AD - Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE,
United States.
FAU - Happ, Mary
AU - Happ M
AD - Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE,
United States.
FAU - Diers, Brian
AU - Diers B
AD - Department of Crop Sciences, University of Illinois, Urbana, IL, United States.
FAU - Lorenz, Aaron
AU - Lorenz A
AD - Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul,
MN, United States.
FAU - Wang, Dechun
AU - Wang D
AD - Department of Plant, Soil and Microbial Sciences, Michigan State University, East
Lansing, MI, United States.
FAU - Joshi, Trupti
AU - Joshi T
AD - Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO,
United States.
AD - MU Data Science and Informatics Institute, University of Missouri, Columbia, MO,
United States.
AD - Department of Electrical Engineering and Computer Science, University of
Missouri, Columbia, MO, United States.
AD - Department of Health Management and Informatics, School of Medicine, University
of Missouri, Columbia, MO, United States.
FAU - Bilyeu, Kristin
AU - Bilyeu K
AD - USDA/ARS Plant Genetics Research Unit, Columbia, MO, United States.
LA - eng
PT - Journal Article
DEP - 20220429
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC9100572
OTO - NOTNLM
OT - development
OT - flowering time
OT - genomics
OT - orthologs
OT - reproductive phase
OT - soybean
OT - vegetative phase
COIS- The authors declare that the research was conducted in the absence of any
commercial or financial relationships that could be construed as a potential
conflict of interest.
EDAT- 2022/05/17 06:00
MHDA- 2022/05/17 06:01
CRDT- 2022/05/16 04:37
PHST- 2022/03/03 00:00 [received]
PHST- 2022/04/08 00:00 [accepted]
PHST- 2022/05/16 04:37 [entrez]
PHST- 2022/05/17 06:00 [pubmed]
PHST- 2022/05/17 06:01 [medline]
AID - 10.3389/fpls.2022.889066 [doi]
PST - epublish
SO - Front Plant Sci. 2022 Apr 29;13:889066. doi: 10.3389/fpls.2022.889066.
eCollection 2022.