---
file_transformations:
- filename: Wm82.gnm2.mrk.mirBase.gff3.gz
  transformation: |
    curl -L https://web.archive.org/web/20210526065750/ftp://mirbase.org/pub/mirbase/22/genomes/gma.gff3 |
      sed '
      s/^chr\([0-9][0-9]\)/glyma.Wm82.gnm2.Gm\1/
      s/^chr\([0-9]\)/glyma.Wm82.gnm2.Gm0\1/
      s/^KQ474119\.1/glyma.Wm82.gnm2.scaffold_22/
      s/^KQ474122\.1/glyma.Wm82.gnm2.scaffold_25/
      s/^KQ474129\.1/glyma.Wm82.gnm2.scaffold_33/
      s/^KQ474130\.1/glyma.Wm82.gnm2.scaffold_34/
      s/^KQ474131\.1/glyma.Wm82.gnm2.scaffold_35/
      s/^KQ474134\.1/glyma.Wm82.gnm2.scaffold_38/
      s/^KQ474144\.1/glyma.Wm82.gnm2.scaffold_51/
      s/^KQ474148\.1/glyma.Wm82.gnm2.scaffold_57/
      s/^KQ474149\.1/glyma.Wm82.gnm2.scaffold_58/
      s/^KQ474151\.1/glyma.Wm82.gnm2.scaffold_60/
      s/^KQ474206\.1/glyma.Wm82.gnm2.scaffold_134/
      s/^KQ474241\.1/glyma.Wm82.gnm2.scaffold_191/
      s/^KQ474607\.1/glyma.Wm82.gnm2.scaffold_1057/' |
        sort_gff.pl | bgzip -l9 > Wm82.gnm2.mrk.mirBase.gff3.gz