---
identifier: RG33x02.gnm1.VNHN

provenance: "The files in this directory originated from GenBank, for RefSeq genome sequence GCA_002914845.1, submitted by Wageningen University (Geurts Lab) in 2018. The GenBank source is considered the primary repository and authoritative; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and Peanutbase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo project. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately."

source: "https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_002914845.1"

synopsis: "Genome assembly 1 for Trema orientale, genotype RG33x02"

scientific_name: Trema orientale

taxid: 63057

scientific_name_abbrev: treor

genotype:
  - RG33x02

chromosome_prefix: Chr

supercontig_prefix: scaffold

description: "Genome assembly 1 for Trema orientale, genotype RG33x02, with sequenced generated using Illumina HiSeq; Illumina MiSeq, AllPaths v. R48961 assembly. See publication for information about additional assembly and scaffolding details."

genbank_accession: GCA_002914845.1

original_file_creation_date: "2018-02-02"

local_file_creation_date: "2024-12-30"

dataset_release_date: "2025-01-02"

publication_doi: 10.1073/pnas.1721395115

publication_title: "Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses."

contributors: van Velzen R, Holmer R, Bu F, Rutten L, van Zeijl A, Liu W, Santuari L, Cao Q, Sharma T, Shen D, Roswanjaya Y, Wardhani TAK, Kalhor MS, Jansen J, van den Hoogen J, Güngör B, Hartog M, Hontelez J, Verver J, Yang WC, Schijlen E, Repin R, Schilthuizen M, Schranz ME, Heidstra R, Miyata K, Fedorova E, Kohlen W, Bisseling T, Smit S, Geurts R.

citation: "van Velzen R, Holmer R, Bu F, Rutten L, van Zeijl A, Liu W, Santuari L, Cao Q, Sharma T, Shen D, Roswanjaya Y, Wardhani TAK, Kalhor MS, Jansen J, van den Hoogen J, Güngör B, Hartog M, Hontelez J, Verver J, Yang WC, Schijlen E, Repin R, Schilthuizen M, Schranz ME, Heidstra R, Miyata K, Fedorova E, Kohlen W, Bisseling T, Smit S, Geurts R. Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses. Proc Natl Acad Sci U S A. 2018 May 15;115(20):E4700-E4709. doi: 10.1073/pnas.1721395115. Epub 2018 May 1. PMID: 29717040; PMCID: PMC5960304."

data_curators: Steven Cannon

public_access_level: public

license: open

keywords: Trema orientale