---
identifier: Jack.gnm3.ann1.S50K

provenance: "The files in this directory originated from GenBank, for RefSeq genome sequence GCA_046254605.1 submitted by the Japanese National Agriculture and Food Research Organization (NARO) in 2024. The GenBank source is considered the primary repository and authoritative; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and Peanutbase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo project. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately."

source: "https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_046254605.1"

synopsis: "Genome annotations v3.01 for Glycine max, genotype Jack, generated by the NARO group in 2024"

scientific_name: Glycine max

taxid: 3847

scientific_name_abbrev: glyma

genotype:
  - Jack

chromosome_prefix: chr

description: "Annotated using Oxford Nanopore + EVM (BRAKER3, augustus, genome threader, stringtie)"

genbank_accession: GCA_046254605.1

original_file_creation_date: "2024-12-23"

local_file_creation_date: "2025-01-10"

dataset_release_date: "2025-05-01"

publication_doi: 10.1038/s41588-025-02113-5

publication_title: "The genomic landscape of gene-level structural variations in Japanese and global soybean Glycine max cultivars"

contributors: Yano, Li, Hiraga, Takeshima, Kobayashi, Toda, Umehara, Kajiya-Kanegae, Iwata, Kaga, Ishimoto

citation: "Yano, R., Li, F., Hiraga, S. et al. The genomic landscape of gene-level structural variations in Japanese and global soybean Glycine max cultivars. Nat Genet (2025). https://doi.org/10.1038/s41588-025-02113-5"

data_curators: Steven Cannon, Jacqueline Campbell, Rex Nelson

public_access_level: public

license: open

keywords: soybean, Glycine max, Jack