##### PUB RECORD #####
## 10.1186/s12864-022-08620-7  35581536  Liu, Zhang, et. al., 2022  "Liu C, Zhang Q, Dong J, Cai C, Zhu H, Li S. Genome-wide identification and characterization of mungbean CIRCADIAN CLOCK ASSOCIATED 1 like genes reveals an important role of VrCCA1L26 in flowering time regulation. BMC Genomics. 2022 May 17;23(1):374. doi: 10.1186/s12864-022-08620-7. PMID: 35581536; PMCID: PMC9115955." ##

PMID- 35581536
OWN - NLM
STAT- MEDLINE
DCOM- 20220519
LR  - 20220716
IS  - 1471-2164 (Electronic)
IS  - 1471-2164 (Linking)
VI  - 23
IP  - 1
DP  - 2022 May 17
TI  - Genome-wide identification and characterization of mungbean CIRCADIAN CLOCK 
      ASSOCIATED 1 like genes reveals an important role of VrCCA1L26 in flowering time 
      regulation.
PG  - 374
LID - 10.1186/s12864-022-08620-7 [doi]
LID - 374
AB  - BACKGROUND: CIRCADIAN CLOCK ASSOCIATED 1 like (CCA1L) proteins are important 
      components that participate in plant growth and development, and now have been 
      characterized in multiple plant species. However, information on mungbean CCA1L 
      genes is limited. RESULTS: In this study, we identified 27 VrCCA1L genes from the 
      mungbean genome. VrCCA1L genes were unevenly distributed on 10 of the 11 
      chromosomes and showed one tandem and two interchromosomal duplication events. 
      Two distinct kinds of conserved MYB domains, MYB 1 and MYB 2, were found, and the 
      conserved SHAQK(Y/F) F sequence was found at the C terminus of each MYB 2 domain. 
      The VrCCA1Ls displayed a variety of exon-intron organizations, and 24 distinct 
      motifs were found among these genes. Based on phylogenetic analysis, VrCCA1L 
      proteins were classified into five groups; group I contained the most members, 
      with 11 VrCCA1Ls. VrCCA1L promoters contained different types and numbers of 
      cis-acting elements, and VrCCA1Ls showed different expression levels in different 
      tissues. The VrCCA1Ls also displayed distinct expression patterns under different 
      photoperiod conditions throughout the day in leaves. VrCCA1L26 shared greatest 
      homology to Arabidopsis CCA1 and LATE ELONGATED HYPOCOTYL (LHY). It delayed the 
      flowering time in Arabidopsis by affecting the expression levels of CONSTANS 
      (CO), FLOWERING LOCUS T (FT), and SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 
      (SOC1). CONCLUSION: We identified and characterized 27 VrCCA1L genes from 
      mungbean genome, and investigated their spatio-temporal expression patterns. 
      Further analysis revealed that VrCCA1L26 delayed flowering time in transgenic 
      Arabidopsis plants. Our results provide useful information for further functional 
      characterization of the VrCCA1L genes.
CI  - (c) 2022. The Author(s).
FAU - Liu, Chenyang
AU  - Liu C
AD  - College of Life Sciences, Key Lab of Plant Biotechnology in Universities of 
      Shandong Province, Qingdao Agricultural University, Qingdao, 266109, China.
FAU - Zhang, Qianqian
AU  - Zhang Q
AD  - College of Life Sciences, Key Lab of Plant Biotechnology in Universities of 
      Shandong Province, Qingdao Agricultural University, Qingdao, 266109, China.
FAU - Dong, Jing
AU  - Dong J
AD  - College of Life Sciences, Key Lab of Plant Biotechnology in Universities of 
      Shandong Province, Qingdao Agricultural University, Qingdao, 266109, China.
FAU - Cai, Chunmei
AU  - Cai C
AD  - College of Life Sciences, Key Lab of Plant Biotechnology in Universities of 
      Shandong Province, Qingdao Agricultural University, Qingdao, 266109, China.
FAU - Zhu, Hong
AU  - Zhu H
AD  - College of Agronomy, Qingdao Agricultural University, Qingdao, 266109, China. 
      zhuhong198812@126.com.
FAU - Li, Shuai
AU  - Li S
AD  - College of Life Sciences, Key Lab of Plant Biotechnology in Universities of 
      Shandong Province, Qingdao Agricultural University, Qingdao, 266109, China. 
      li2014shuai@qau.edu.cn.
LA  - eng
GR  - 31971898, 32171979/National Natural Science Foundation of China/
PT  - Journal Article
DEP - 20220517
PL  - England
TA  - BMC Genomics
JT  - BMC genomics
JID - 100965258
RN  - 0 (Arabidopsis Proteins)
SB  - IM
MH  - *Arabidopsis/metabolism
MH  - *Arabidopsis Proteins/genetics
MH  - *Circadian Clocks/genetics
MH  - Circadian Rhythm/genetics
MH  - Flowers
MH  - Gene Expression Regulation, Plant
MH  - Photoperiod
MH  - Phylogeny
MH  - *Vigna/genetics
PMC - PMC9115955
OTO - NOTNLM
OT  - CCA1
OT  - Flowering time
OT  - Mungbean
OT  - Photoperiod
OT  - VrCCA1L26
COIS- The authors declare that they have no competing interests.
EDAT- 2022/05/18 06:00
MHDA- 2022/05/20 06:00
PMCR- 2022/05/17
CRDT- 2022/05/17 23:35
PHST- 2022/01/06 00:00 [received]
PHST- 2022/05/11 00:00 [accepted]
PHST- 2022/05/17 23:35 [entrez]
PHST- 2022/05/18 06:00 [pubmed]
PHST- 2022/05/20 06:00 [medline]
PHST- 2022/05/17 00:00 [pmc-release]
AID - 10.1186/s12864-022-08620-7 [pii]
AID - 8620 [pii]
AID - 10.1186/s12864-022-08620-7 [doi]
PST - epublish
SO  - BMC Genomics. 2022 May 17;23(1):374. doi: 10.1186/s12864-022-08620-7.