file_transformation: - "vigra.VC1973A.gnm6.ann1.M1Qs.genes.fna was derived from gene GFF and genomic fasta as follows: cat Vradi.ver6.cor.gene.gff | gff2bed | - perl -pe 's/^(\w+\t\d+\t\d+)\t(\d+)\t.+ID=\d+;Name=(\w+);/$1\t$3/' > Vradi.ver6.cor.gene.bed bedtools getfasta -fi Vradi.ver6.cor.fa -bed Vradi.ver6.cor.gene.bed -fo vigra.VC1973A.gnm6.ann1.M1Qs.genes.fna -name" changes: - 2018-03-03 Added MANIFEST files - 2018-09-15 Added prefixes to seq ids in fastas (s/^>/>vigra.VC1973A.gnm6.ann1./) - 2020-09-30 Added gene family assignments - 2022-01-20 SCannon - rename genes.fna to mrna.fna mv vigra.VC1973A.gnm6.ann1.M1Qs.genes.fna.gz vigra.VC1973A.gnm6.ann1.M1Qs.mrna.fna.gz - 2023-05-31 adf: bgzip gff