--- - name: feature_id_remapping.txt.gz description: MISSING - name: vicfa.Hedin2.gnm1.ann1.PTNK.cds_primary.fna.gz description: CDS sequences - primary only prior_names: - Vfaba.Hedin2.v1.gffread.cds_primary.fna.gz - name: vicfa.Hedin2.gnm1.ann1.PTNK.cds.fna.gz description: CDS sequences applications: - blast - mines prior_names: - Vfaba.Hedin2.v1.gffread.cds.fna.gz - name: vicfa.Hedin2.gnm1.ann1.PTNK.featid_map.tsv.gz description: Hash file of old/new gene IDs - name: vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.bed.gz description: BED-format file, derived from gene_models_main.gff3 - name: vicfa.Hedin2.gnm1.ann1.PTNK.gene_models_main.gff3.gz description: Gene models - main applications: - mines - jbrowse-index prior_names: - Vfaba.Hedin2.v1.agat.gff3.gz - name: vicfa.Hedin2.gnm1.ann1.PTNK.iprscan.gff3.gz description: InterPro functional information for genes (gff format) - name: vicfa.Hedin2.gnm1.ann1.PTNK.legfed_v1_0.M65K.gfa.tsv.gz description: gene family assignments - name: vicfa.Hedin2.gnm1.ann1.PTNK.mrna_primary.fna.gz description: Transcript sequences - primary only prior_names: - Vfaba.Hedin2.v1.gffread.mrna_primary.fna.gz - name: vicfa.Hedin2.gnm1.ann1.PTNK.mrna.fna.gz description: Transcript sequences applications: - mines prior_names: - Vfaba.Hedin2.v1.gffread.mrna.fna.gz - name: vicfa.Hedin2.gnm1.ann1.PTNK.ncrna.fna.gz description: MISSING - name: vicfa.Hedin2.gnm1.ann1.PTNK.noncoding.gff3.gz description: Noncoding features - name: vicfa.Hedin2.gnm1.ann1.PTNK.protein_primary.faa.gz description: Protein sequences - primary only prior_names: - Vfaba.Hedin2.v1.gffread.protein_primary.faa.gz - name: vicfa.Hedin2.gnm1.ann1.PTNK.protein.faa.gz description: Protein sequences applications: - blast - mines prior_names: - Vfaba.Hedin2.v1.gffread.protein.faa.gz - name: vicfa.Hedin2.gnm1.ann1.PTNK.transcript.fna.gz description: MISSING