--- file_transformation: perl -pe 's/^>/>trisu.Daliak.gnm2.ann1.MFKF./' Tsu.cds.fa >trisu.Daliak.gnm2.ann1.MFKF.9M1L.cds.fna perl -pe 's/^>/>trisu.Daliak.gnm2.ann1.MFKF./' Tsu.pep.fa >trisu.Daliak.gnm2.ann1.MFKF.9M1L.protein.faa perl -pe 's/^>/>trisu.Daliak.gnm2.ann1.MFKF./' Tsu.longestmRNA.cds.fa >trisu.Daliak.gnm2.ann1.MFKF.9M1L.cds_primary.fna perl -pe 's/^>/>trisu.Daliak.gnm2.ann1.MFKF./' Tsu.longestmRNA.pep.fa >trisu.Daliak.gnm2.ann1.MFKF.9M1L.protein_primary.faa perl -pe 's/^Tr(\S+)_v2.0/trisu.Daliak.gnm2.$1/; s/^Tr_(sca\S+_\S+)_v2.0/trisu.Daliak.gnm2.$1/; s/ID=(\S+);/ID=trisu.Daliak.gnm2.ann1.MFKF.$1;/; s/Parent=(\S+)/Parent=trisu.Daliak.gnm2.ann1.MFKF.$1/' Tsu.genes.gff >trisu.Daliak.gnm2.ann1.MFKF.9M1L.gene_models_main.gff3 changes: - 2022-02-25 initial Legume Federation Data Store file preparation - 2022-02-25 Applied prefixes to fasta and GFF files - see file_transformations above - 2022-03-03 Add AHRD annotation and gene family assignments - 2022-03-22 remove _v2.0 with perl -pe 's/_v2.0//g' in cds, protein fasta files; gene_models_main and iprscan gff3 files; and gfa.tsv file.