---
identifier: JI2822.gnm1.QBWW

provenance: "The files in this directory originated from GenBank, for RefSeq genome sequence GCA_964186695.1 submitted by John Innes Centre in 2024. The GenBank source is considered the primary repository and authoritative; files here are held as part of the LegumeInfo and SoyBase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and SoyBase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately."

source: "https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_964186695.1"

synopsis: "Pisum sativum accession JI2822, genome assembly v1"

scientific_name: Pisum sativum

taxid: 3888

scientific_name_abbrev: pissa

genotype:
  - JI2822

chromosome_prefix: Chr

supercontig_prefix: scaffold

description: "This genome assembly was produced by the John Innes Centre. It corresponds with GenBank assembly GCA_964186695.1. The sequence was generated with PacBio Sequel and assembled with hifiasm method"

dataset_doi: "10.5281/zenodo.12755082"

genbank_accession: GCA_964186695.1

original_file_creation_date: "2024-09-05"

local_file_creation_date: "2026-05-28"

dataset_release_date: "2026-06-01"

publication_doi: 10.1093/jxb/erae518

publication_title: "Rebalancing the seed proteome following deletion of vicilin-related genes in pea (Pisum sativum L.)."

contributors: Rayner T, Saalbach G, Vickers M, Paajanen P, Martins C, Wouters RHM, Chinoy C, Mulholland F, Bal M, Isaac P, Novak P, Macas J, Ellis N, Steuernagel B, Domoney C.

citation: "Rayner T, Saalbach G, Vickers M, Paajanen P, Martins C, Wouters RHM, Chinoy C, Mulholland F, Bal M, Isaac P, Novak P, Macas J, Ellis N, Steuernagel B, Domoney C. Rebalancing the seed proteome following deletion of vicilin-related genes in pea (Pisum sativum L.). J Exp Bot. 2025 Nov 17;76(20):5830-5860. doi: 10.1093/jxb/erae518. PMID: 39707743; PMCID: PMC12621101."

data_curators: Wei Huang, Steven Cannon

public_access_level: public, restricted

license: Open, with usage agreement

keywords: Amino acid profile, genetic deletion, mutagenesis, pea genome sequence, pea seed, vicilin