---
identifier: Cameor.gnm1.ann1.expr.Cameor.Alves-Carvalho_Aubert_2014 

provenance: "The files in this directory derive from supplementary data from Alves-Carvalho et al., Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas an gives insights into root nodulation in this species. The Plant Journal. The files here are held as part of the SoyBase, LegumeInfo, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the SoyBase, LegumeInfo, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory."


synopsis: Pisum sativum expression data from multi-factor experiment 

scientific_name: Pisum sativum
  
taxid: 3888

scientific_name_abbrev: pissa

genotype:
  - Cameor

expression_unit: TPM

description: "Pisum sativum expression from a variety of tissues, high and low nitrate, different growth methods"

original_file_creation_date: "2014-11-14"

local_file_creation_date: "2024-07-05"

dataset_release_date: "2024-07-14"

publication_doi: 10.1111/tpj.12967

publication_title: "Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species"

bioproject: PRJNA267198

data_curators: Andrew Farmer, Evan Lavelle

public_access_level: public

license: open

keywords: pea, nitrate, hydroponic, aeroponic

citation: "Alves-Carvalho et al., Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. The Plant Journal. 2015 August 22;84(1):1-19."

contributors: "Susete Alves-Carvalho, Gregoire Aubert, Sebastien Carrere, Corinne Cruaud, Anne-Lise Brochot, Francoise Jacquin, Anthony Klein, Chantal Martin, Karen Boucherot, Jonathan Kreplak, Corinne da Silva, Sandra Moreau, Pascal Gamas, Patrick Wincker, Jerome Gouzy, Judith Burstin."