---
identifier: Cameor.gnm1.div.Powers_Boatwright_2021

provenance: "The files in this directory originated from USDA Ag Data Commons (https://agdatacommoms.nal.usda.gov). Files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo project, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo projects). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory."

source: "https://agdatacommons.nal.usda.gov/articles/dataset/Data_from_A_Community_Resource_for_Exploring_and_Utilizing_Genetic_Diversity_in_the_USDA_Pea_Single_Plant_Plus_Collection/24852186"

synopsis: "VCF file containing SNP data pertaining to the USDA Pea Single Plant Plus Collection"

scientific_name: Pisum sativum

taxid: 3888

scientific_name_abbrev: pissa

genotype:
  - Cameor

description: "VCF file containing SNP data pertaining to the USDA Pea Single Plant Plus Collection. The VCF file included in this collection was generated with the worflow map-markers-to-assembly, which mapped markers from the initial PSPPC coordinates into the same assembly (pissa.Cameor.gnm1.P4FG.genome_main.fna), removing 3.8% of the markers that did not have placements with at least 1000 bases flanking sequence and >= 80% query coverage of those bases in the genome."

original_file_creation_date: "2024-02-08"

local_file_creation_date: "2026-05-20"

publication_doi: 10.1093/g3journal/jkab227

dataset_release_date: "2026-05-21"

publication_title: Gemome-wide association studies of mineral and phytic acid concentrations in pea (Pisum sativum L.) to evaluate biofortification potential

contributors: Sarah Powers, J Lucas Boatwright, Dil Thavarajah

data_curators: Wei Huang, Steven Cannon

public_access_level: public

license: Open

keywords: pea, gwas, genotyping, genetic diversity, map, Lathyrus oleraceus

citation: "Powers, S., Boatwright, J L., Thavarajah, D. (2021). Gemome-wide association studies of mineral and phytic acid concentrations in pea (Pisum sativum L.) to evaluate biofortification potential in genomic research. G3: Genes, Genomes, Genetics, 11(9), Sep. 2021."