Pod size traits PP1.1XB Pv01 43.1–69.5 SNP01_228 SNP01_243 11.04 − 0.77 0.05 PP1.2XB Pv01 136.5–144.1 SNP01_562 SNP01_572 17.82 − 0.94 0.10 PP7XB Pv07 54.9–63.3 SNP07_243 SNP07_247 21.52 1.42 0.13 PP9XB* Pv09 0.0–2.7 SNP09_023 SNP09_049 11.54 0.67 0.05 PA5.2XB Pv05 119.1–127.1 SNP05_290 SNP05_297 10.62 − 0.55 0.10 PA7.2XB Pv07 41.5–49.7 SNP07_188 SNP07_204 10.77 0.69 0.27 PA7.3XB Pv07 57.1–61.1 SNP07_243 SNP07_247 36.92 0.57 0.24 PA9XB Pv09 0.0–2.7 SNP09_09 SNP09_023 9.13 0.37 0.06 PWI5XB* Pv05 56.8–62.8 SNP05_106 SNP05_108 10.44 − 0.02 0.07 PWI6XB Pv06 18.1–23.0 SNP06_200 SNP06_247 12.71 − 0.03 0.11 PWI7XB Pv07 40.5–51.2 SNP07_175 SNP07_188 12.22 0.06 0.28 PWI11XB* Pv11 59.3–72.6 SNP11_186 SNP11_202 16.42 0.03 0.06 PL1.1XB Pv01 59.6–63.7 SNP01_288 SNP01_295 10.93 − 0.39 0.06 PL1.2XB* Pv01 133.6–136.5 SNP01_543 SNP01_562 11.64 − 0.45 0.06 PL3.1* Pv03 65.7–72.4 SNP03_515 SNP03_532 11.45 0.26 0.06 PL7XB Pv07 45.7–52.2 SNP07_188 SNP07_204 25.21 0.51 0.15 NSP1.2XB Pv01 46.6–63.7 SNP01_243 SNP01_251 8.94 − 0.18 0.05 NSP1.3XB Pv01 135.6–144.1 SNP01_562 SNP01_572 16.92 − 0.32 0.19 Seed traits SA1.2XB* Pv01 130.5–137.5 SNP01_543 SNP01_562 8.13 3.15 0.06 SA2.2XB Pv02 96.8–101.7 SNP02_172 SNP02_179 7.04 2.88 0.06 SA7.1XB Pv07 41.5–52.2 SNP07_175 SNP07_188 14.11 6.31 0.25 SA7.2XB Pv07 86.9–88.9 SNP07_316 SNP07_317 18.74 5.59 0.26 SA9XB* Pv09 4.1–8.3 SNP09_098 SNP09_119 15.44 3.57 0.07 SA11XB Pv11 58.3–71.4 SNP11_186 SNP11_202 10.23 3.90 0.07 SP2.1XB Pv02 96.8–102.3 SNP02_172 SNP02_179 11.22 1.09 0.06 SP7.1XB Pv07 40.5–50.2 SNP07_175 SNP07_188 10.13 1.52 0.20 SP7.2XB* Pv07 84.9–88.9 SNP07_316 SNP07_317 12.01 0.88 0.18 SP9XB Pv09 10.1–15.7 SNP09_129 SNP09_137 18.30 0.89 0.08 SP11.2XB* Pv11 67.4–72.6 SNP11_202 SNP11_219 16.03 1.25 0.11 SL1XB* Pv01 68.5–73.5 SNP01_348 SNP01_350 14.94 0.37 0.05 SL2XB Pv02 97.8–101.7 SNP02_172 SNP02_179 13.42 0.43 0.06 SL7.1XB* Pv07 39.5–51.2 SNP07_175 SNP07_188 9.22 0.49 0.19 SL7.2XB* Pv07 83.3–88.9 SNP07_316 SNP07_317 13.10 0.42 0.22 SL9XB Pv09 10.1–15.0 SNP09_129 SNP09_137 22.02 0.42 0.07 SL11XB* Pv11 67.4–72.6 SNP11_202 SNP11_219 26.52 0.43 0.11 SWI1XB Pv01 132.2–138.5 SNP01_543 SNP01_562 10.62 0.23 0.11 SWI3.1XB Pv03 18.9–37.9 SNP03_111 SNP03_122 6.73 0.22 0.11 SWI7XB* Pv07 37.9–49.7 SNP07_164 SNP07_175 14.42 0.29 0.25 SW3XB* Pv03 24.5–33.7 SNP03_122 SNP03_145 7.75 0.25 0.06 SW6XB Pv06 69.7–77.0 SNP06_582 SNP06_612 14.64 0.64 0.09 SW7.1XB Pv07 64.4–67.6 SNP07_271 SNP07_286 47.31 0.44 0.20 SW7.2XB* Pv07 84.9–88.9 SNP07_316 SNP07_317 12.91 1.09 0.29 SW8XB Pv08 162.7–167.5 SNP08_643 SNP08_652 9.63 0.66 0.10