E-SL1.1XC 	Pv01 	99.3–105.0 	SNP_1846 	SNP_2114 	E-SL2.2XC 	Pv02 	20.3–28.7 	SNP_646 	SNP_485 	0.18 	0.02
E-SL2.1XC 	Pv02 	0.0–5.7 	SNP_983 	SNP_1818 	E-SL2.5XC 	Pv02 	110.5–113.4 	SNP_926 	SNP_1836 	0.36 	0.04
E-SL2.3XC 	Pv02 	61.6–65.9 	SNP_923 	SNP_741 	E-SL3.2XC 	Pv03 	38.6–43.4 	SNP_173 	SNP_2259 	0.30 	0.02
E-SL2.4XC 	Pv02 	93.1–97.2 	SNP_852 	SNP_142 	E-SL7.1XC 	Pv07 	39.1–45.7 	PV/atcc001 	T/S_07 	− 0.20 	0.03
E-SL3.1XC 	Pv03 	20.1–24.9 	SNP_705 	SNP_1532 	E-SL11.2XC 	Pv11 	54.2–57.5 	SNP_2392 	0,23 	 	0.02
SWI3XC* 	Pv03 	24.0–29.1 	SNP_1309 	SNP_1227 	SWI5XC* 	Pv05 	77.4–80.1 	SNP_1644 	SNP_11 	0.07 	0.02
E-SWI2XC 	Pv02 	83.8–91.1 	SNP_2302 	SNP_1402 	E-SWI9XC 	Pv09 	41.3–46.6 	SNP_242 	SNP_1352 	0.11 	0.04
E-SWI6.1XC 	Pv09 	10.7–12.8 	BMb342 	SNP_1071 	E-SWI11XC 	Pv11 	58.5–64.6 	IND11_16.3739 	0,11 	 	0.05
ST2.2XC* 	Pv02 	144.2–150.6 	SNP_582 	SNP_425 	E-ST8XC 	Pv08 	94.4–102.8 	SNP_447 	SNP_1358 	0.07 	0.02
ST5.1XC* 	Pv05 	0.0–2.9 	SNP_217 	SNP_730 	E-ST8XC 	Pv08 	94.4–102.8 	SNP_447 	SNP_1358 	− 0.09 	0.02
E-ST5.2XC 	Pv05 	80.1–90.0 	SNP_1635 	SNP_1382 	E-ST10XC 	Pv10 	27.1–35.5 	SNP_476 	PVBR185 	0.08 	0.03
E-ST1.1XC 	Pv01 	96.0–99.3 	SNP_1229 	SNP_108 	E-ST6.1XC 	Pv06 	116.0–120.7 	SNP_389 	BMd37 	0.09 	0.03
E-ST1.2XC 	Pv01 	152.1–162.0 	IND1_516243 	SNP_8 	E-ST3.2XC 	Pv03 	64.4–68.5 	SNP_530 	SNP_1808 	0.07 	0.02
E-ST2.1XC 	Pv02 	137.8–143.7 	SNP_1746 	SNP_1854 	E-ST10XC 	Pv10 	27.1–35.5 	SNP_476 	PVBR185 	− 0.10 	0.02
SW2.2XC* 	Pv02 	111.4–130.4 	IND2_42.5225 	SNP_717 	E-SW6.1XC 	Pv06 	34.8–44.5 	Pv67700b 	BM187 	0.44 	0.02
E-SW2.1XC 	Pv02 	96.2–98.9 	SNP_1543 	SNP_505 	E-SW11XC 	Pv11 	25.7–29.9 	BMd33 	Bng91 	0.37 	0.02
E-SW4XC 	Pv04 	80.0–99.6 	SAS15 	SNP_2166 	SW6.2XC* 	Pv06 	119.2–120.7 	SNP_1336 	ROC11(300) 	− 0.70 	0.04
PL1XC* 	Pv01 	157.0–166.8 	IND1_516243 	SNP_8 	PL7XC* 	Pv07 	68.0–72.5 	IND7_393007 	SNP_1967 	0.19 	0.02
PWI1XC* 	Pv01 	158.0–163.8 	IND1_516243 	SNP_8 	PWI7XC* 	Pv07 	48.4–52.0 	SNP_195 	SNP_2278 	0.20 	0.03
PT1.2XC* 	Pv01 	102.0–115.4 	SNP_1846 	SNP_2114 	PT8XC* 	Pv08 	94.4–101.4 	SNP_1795 	SNP_1355 	0.16 	0.03