Pod size traits
  PL1XC* 	Pv01 	157.0–166.8 	IND1_516243 	SNP_8 	8.02 	− 0.42 	0.15
  PL2.1XC 	Pv02 	76.5–80.3 	SNP_586 	SNP_688 	9.40 	0.33 	0.06
  PL2.2XC 	Pv02 	145.2–153.9 	SNP_1348 	SNP_1722 	10.91 	0.52 	0.17
  PL7XC* 	Pv07 	68.0–72.5 	IND7_393007 	SNP_1967 	9.11 	0.35 	0.05
  PWI1XC* 	Pv01 	158.0–163.8 	IND1_516243 	SNP_8 	7.90 	0.26 	0.07
  PWI7XC* 	Pv07 	48.4–52.0 	SNP_195 	SNP_2278 	18.5 	0.58 	0.27
  PT1.1XC 	Pv01 	0.0–3.0 	PVBR233 	SNP_1252 	7.60 	0.21 	0.08
  PT1.2XC* 	Pv01 	102.0–115.4 	SNP_1846 	SNP_2114 	7.90 	0.27 	0.09
  PT8XC* 	Pv08 	94.4–101.4 	SNP_1795 	SNP_1355 	7.70 	0.26 	0.07
  NSP2XC 	Pv02 	157.2–158.7 	SNP_2018 	SW13 	7.20 	− 0.12 	0.05
  NSP3XC 	Pv03 	16.4–26.9 	SNP_965 	SNP_705 	8.32 	− 0.18 	0.06
  NSP7XC 	Pv07 	45.7–52.9 	SNP_195 	SNP_2278 	9.43 	− 0.24 	0.10
  NSP11XC 	Pv11 	23.7–34.2 	SNP_1657 	SNP_1658 	8.22 	− 0.12 	0.06
Seed traits
  SL2.6XC 	Pv02 	141.6–150.2 	SNP_582 	SNP_425 	9.22 	0.72 	0.24
  SL6XC 	Pv06 	117.5–120.0 	BMd37 	SNP_1336 	11.30 	0.49 	0.19
  SL7.2XC 	Pv07 	50.7–52.0 	SNP_1000 	SNP_642 	10.71 	0.26 	0.07
  SL10XC 	Pv10 	61.1–70.0 	SNP_1898 	SH08_10 	9.42 	0.31 	0.08
  SL11.1XC 	Pv11 	24.7–27.9 	BMd33 	Bng91 	10.8 	0.17 	0.05
  SWI3XC* 	Pv03 	24.0–29.1 	SNP_1309 	SNP_1227 	8.92 	0.14 	0.07
  SWI5XC* 	Pv05 	77.4–80.1 	SNP_1644 	SNP_11 	6.95 	− 0.09 	0.10
  SWI6.2XC 	Pv06 	123.2–128.4 	SNP_1 	SNP_1602 	8.93 	0.16 	0.12
  SWI7XC 	Pv07 	50.7–52.0 	SNP_1000 	SNP_642 	9.64 	0.18 	0.13
  SWI8XC 	Pv08 	12.4–21.5 	SNP_1406 	78L17c 	5.52 	0.14 	0.05
  SWI10XC 	Pv10 	28.1–32.5 	SNP_476 	PVBR185 	12.42 	0.12 	0.07
  ST2.2XC* 	Pv02 	144.2–150.6 	SNP_582 	SNP_425 	8.14 	− 0.14 	0.10
  ST3.1XC 	Pv03 	45.8–52.7 	SNP_1279 	SNP_1138 	5.24 	0.10 	0.09
  ST3.3XC 	Pv03 	103.4–111.2 	SNP_1915 	SNP_1660 	5.77 	− 0.13 	0.09
  ST5.1XC* 	Pv05 	0.0–2.9 	SNP_217 	SNP_730 	6.11 	− 0.15 	0.08
  ST6.2XC* 	Pv06 	123.2–126.3 	SNP_1 	SNP_1602 	9.85 	0.17 	0.07
  ST7XC 	Pv07 	61.2–62.5 	SNP_1121 	BM185 	7.76 	0.17 	0.10
  SW2.2XC* 	Pv02 	111.4–130.4 	IND2_42.5225 	SNP_717 	5.95 	0.44 	0.09
  SW3XC 	Pv03 	27.3–29.1 	SNP_2338 	SNP_130 	7.65 	0.65 	0.08
  SW6.2XC* 	Pv06 	119.2–120.7 	SNP_1336 	ROC11(300) 	15.62 	0.93 	0.15
  SW7XC 	Pv07 	50.7–52.0 	SNP_1000 	SNP_642 	24.24 	1.28 	0.19