--- identifier: BAT93_x_JALOEEP558.map.McClean_Mamidi_2010 genetic_map: BAT93_x_JALOEEP558.McClean_Mamidi_2010 genotyping_platform: McClean_Mamidi_2010 synopsis: "Gene-based markers were used for mapping a RIL population of P. vulgaris. Over 1,800 SNPs and indels were found, 300 of which were screened in the RIL population. The resulting LOD 2.0 map is 1,545 cM in length and consists of 275 gene-based and previously mapped core markers." scientific_name: Phaseolus vulgaris taxid: 3885 scientific_name_abbrev: phavu genotype: - BAT93 × Jalo EEP558 description: "In this study, gene-based markers were used for mapping in a recombinant inbred (RI) population of Phaseolus vulgaris L. P. vulgaris, common dry bean, is an important food source, economic product, and model organism for the legumes. Gene-based markers were developed that corresponded to genes controlling mutant phenotypes in Arabidopsis thaliana, genes undergoing selection during domestication in maize, and genes that function in a biochemical pathway in A. thaliana. Sequence information, including introns and 3' UTR, was generated for over 550 genes in the two genotypes of P. vulgaris. Over 1,800 single nucleotide polymorphisms and indels were found, 300 of which were screened in the RI population. The resulting LOD 2.0 map is 1,545 cM in length and consists of 275 gene-based and previously mapped core markers. An additional 153 markers that mapped at LOD <1.0 were placed in genetic bins. By screening the parents of other mapping populations, it was determined that the markers were useful for other common Mesoamerican × Andean mapping populations. The location of the mapped genes relative to their homologs in Arabidopsis thaliana (At), Medicago truncatula (Mt), and Lotus japonicus (Lj) were determine by using a tblastx analysis with the current psedouchromosome builds for each of the species. While only short blocks of synteny were observed with At, large-scale macrosyntenic blocks were observed with Mt and Lj. By using Mt and Lj as bridging species, the syntenic relationship between the common bean and peanut was inferred." publication_doi: 10.1007/s00122-010-1375-9 publication_title: "Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.)" contributors: "Melody McConnell, Sujan Mamidi, Rian Lee, Shireen Chikara, Monica Rossi, Roberto Papa, Phillip McClean" data_curators: Sam Hokin public_access_level: public license: Open citation: "McConnell M, Mamidi S, Lee R, Chikara S, Rossi M, Papa R, McClean P. Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.). Theor Appl Genet. 2010 Oct;121(6):1103-16."