---
identifier: mixed.gwas.Parker_BernyMierYTeran_2020
  
synopsis: "GWAS study of pod dehiscence in Phaseolus vulgaris dry beans, using the Andean and Mesoamerican Diversity Panels." 

scientific_name: Phaseolus vulgaris

taxid: 3885

scientific_name_abbrev: phavu

genotype: 
  - Andean and Mesoamerican Diversity Panels

description: "GWAS study of pod dehiscence in Phaseolus vulgaris dry beans, using the Andean and Mesoamerican Diversity Panels. Association mapping was carried out with generalized linear models and results were visualized with the QQMAN package in R.  Regions of significance were delimited as the areas between the first and last significant SNPs on a chromosome.  A Bonferroni-corrected alpha of 0.05 was used to determine the significance of SNPs after they met the threshold established as a minor allele frequency (MAF) of 0.1."

publication_doi: 10.1111/nph.16164

publication_title: "Pod indehiscence is a domestication and aridity resilience trait in common bean"

contributors: "Parker, Travis A; Berny Mier Y Teran, Jorge C; Palkovic, Antonia; Jernstedt, Judy; Gepts, Paul"

data_curators: Steven Cannon, Sam Hokin

public_access_level: public

license: Open

citation: "Parker, T. A., Berny Mier Y Teran, J. C., Palkovic, A., Jernstedt, J. & Gepts, P. Pod indehiscence is a domestication and aridity resilience trait in common bean. New Phytol. 225, 558–570 (2020)"

genotyping_platform: Parker_BernyMierYTeran_2020