---
identifier: G19833.gnm1.ann1.expr.Negro_jamapa.ORourke_Iniguez_2014

provenance: "Bean Expression Atlas for Phaseolus vulgaris cv. Negro jamapa."

scientific_name: Phaseolus vulgaris

taxid: 3885

bioproject: PRJNA210619

sraproject: SRP046307

scientific_name_abbrev: phavu

genotype:
  - Negro jamapa
  
synopsis: "Bean Expression Atlas for common bean cv. Negro jamapa mapped to the G19833 version 1 genome annotation."

description: "We present the Phaseolus vulgaris cv. Negro jamapa expression profiles for all predicted genes in the P. vulgaris reference genome (G 19833) for 24 unique samples from seven distinct tissues; roots, nodules, stems, flowers, leaves, pods, and seeds throughout development. We identified genes differentially expressed between distinct tissues and between samples from the same tissue collected at different time points. We have also identified sequences uniquely expressed in each sample and in each tissue. Genes with stable expression patterns, to be used as housekeeping sequences in future experiments, were also identified. We utilized the expression profiles of all predicted genes in Phaseolus vulgaris to examine the biological processes related to seed and pod development, nodulation and symbiosis, and changes in gene expression due to nitrogen availability."

expression_unit: TPM

local_file_creation_date: "2017-01-01"

publication_doi: 10.1186/1471-2164-15-866

publication_title: "O'Rourke JA, Iniguez LP, Fu F, Bucciarelli B, Miller SS, Jackson SA, McClean PE, Li J, Dai X, Zhao PX, Hernandez G, Vance CP. An RNA-Seq based gene expression atlas of the common bean. BMC Genomics. 2014 Oct 6;15:866."

license: public