---
- name: phavu.UI111.gnm1.ann1.8L4N.cds_primary.fna.gz
  description: CDS sequences - primary only
- name: phavu.UI111.gnm1.ann1.8L4N.cds.fna.gz
  description: CDS sequences
  applications:
   - blast
   - mines
- name: phavu.UI111.gnm1.ann1.8L4N.gene_models_main.bed.gz
  description: BED-format file, derived from gene_models_main.gff3
- name: phavu.UI111.gnm1.ann1.8L4N.gene_models_main.gff3.gz
  description: Gene models - main
  applications:
   - mines
   - jbrowse-index
  prior_names:
   - PvulgarisUI111_534_v1.1.gene.gff3.gz
- name: phavu.UI111.gnm1.ann1.8L4N.info_annot.txt.gz
  description: Annotation information
  prior_names:
   - PvulgarisUI111_534_v1.1.annotation_info.txt
- name: phavu.UI111.gnm1.ann1.8L4N.info_defline.txt.gz
  description: Functional descriptor, from Phytozome
  prior_names:
   - PvulgarisUI111_534_v1.1.defline.txt
- name: phavu.UI111.gnm1.ann1.8L4N.legfed_v1_0.M65K.gfa.tsv.gz
  description: gene family assignments
- name: phavu.UI111.gnm1.ann1.8L4N.mrna_primary.fna.gz
  description: Transcript sequences - primary only
  prior_names:
   - PvulgarisUI111_534_v1.1.transcript_primaryTranscriptOnly.fa.gz
- name: phavu.UI111.gnm1.ann1.8L4N.mrna.fna.gz
  description: Transcript sequences
  applications:
   - mines
  prior_names:
   - PvulgarisUI111_534_v1.1.transcript.fa.gz
- name: phavu.UI111.gnm1.ann1.8L4N.protein_primary.faa.gz
  description: Protein sequences - primary only
  prior_names:
   - PvulgarisUI111_534_v1.1.protein_primaryTranscriptOnly.fa.gz
- name: phavu.UI111.gnm1.ann1.8L4N.protein.faa.gz
  description: Protein sequences
  applications:
   - blast
   - mines
  prior_names:
   - PvulgarisUI111_534_v1.1.protein.fa.gz
- name: phavu.UI111.gnm1.ann1.8L4N.repeatmasked_assembly_v1.0.gff3.gz
  description: Repeat-masking coordinates
  prior_names:
   - PvulgarisUI111_534_v1.1.repeatmasked_assembly_v1.0.gff3.gz