# This file was produced by bcftools stats (1.15+htslib-1.15) and can be plotted using plot-vcfstats. # The command line was: bcftools stats --samples - medtr.A17.gnm5.div.Epstein_Burghardt_2022.Mt5_qual30_primitives_imputed.2021-09-29.vcf.gz # # Definition of sets: # ID [2]id [3]tab-separated file names ID 0 medtr.A17.gnm5.div.Epstein_Burghardt_2022.Mt5_qual30_primitives_imputed.2021-09-29.vcf.gz # SN, Summary numbers: # number of records .. number of data rows in the VCF # number of no-ALTs .. reference-only sites, ALT is either "." or identical to REF # number of SNPs .. number of rows with a SNP # number of MNPs .. number of rows with a MNP, such as CC>TT # number of indels .. number of rows with an indel # number of others .. number of rows with other type, for example a symbolic allele or # a complex substitution, such as ACT>TCGA # number of multiallelic sites .. number of rows with multiple alternate alleles # number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs # # Note that rows containing multiple types will be counted multiple times, in each # counter. For example, a row with a SNP and an indel increments both the SNP and # the indel counter. # # SN [2]id [3]key [4]value SN 0 number of samples: 267 SN 0 number of records: 40907386 SN 0 number of no-ALTs: 0 SN 0 number of SNPs: 37046405 SN 0 number of MNPs: 0 SN 0 number of indels: 4955793 SN 0 number of others: 9647 SN 0 number of multiallelic sites: 5745776 SN 0 number of multiallelic SNP sites: 4124966 # TSTV, transitions/transversions: # TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT) TSTV 0 24349255 17068086 1.43 22416836 14345071 1.56 # SiS, Singleton stats: # SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable SiS 0 1 7099620 3767327 3332293 533476 0 0 533476 # AF, Stats by non-reference allele frequency: # AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable AF 0 0.000000 16785902 8877970 7907932 2023307 0 0 2023307 AF 0 0.003745 4863417 2918998 1944419 604886 0 0 604886 AF 0 0.007491 2601529 1617653 983876 352473 0 0 352473 AF 0 0.011236 1725987 1083892 642095 240070 0 0 240070 AF 0 0.014981 1274155 804539 469616 181077 0 0 181077 AF 0 0.018727 1007304 637223 370081 145569 0 0 145569 AF 0 0.022472 828442 525838 302604 121950 0 0 121950 AF 0 0.026217 694726 442135 252591 104183 0 0 104183 AF 0 0.029963 593879 379105 214774 90227 0 0 90227 AF 0 0.033708 513658 328136 185522 79737 0 0 79737 AF 0 0.037453 450466 287453 163013 70187 0 0 70187 AF 0 0.041199 399278 255415 143863 63059 0 0 63059 AF 0 0.044944 356428 228007 128421 57278 0 0 57278 AF 0 0.048689 322274 206117 116157 52171 0 0 52171 AF 0 0.052434 289519 185287 104232 48011 0 0 48011 AF 0 0.056180 263295 168876 94419 44238 0 0 44238 AF 0 0.059925 242299 155508 86791 41155 0 0 41155 AF 0 0.063670 224447 143883 80564 37413 0 0 37413 AF 0 0.067416 207099 132610 74489 35592 0 0 35592 AF 0 0.071161 194404 124666 69738 33204 0 0 33204 AF 0 0.074906 179477 114924 64553 31072 0 0 31072 AF 0 0.078652 166890 106971 59919 29075 0 0 29075 AF 0 0.082397 156818 100308 56510 27410 0 0 27410 AF 0 0.086142 146165 93559 52606 25963 0 0 25963 AF 0 0.089888 138009 88576 49433 24525 0 0 24525 AF 0 0.093633 131316 83989 47327 23764 0 0 23764 AF 0 0.097378 124132 78994 45138 22014 0 0 22014 AF 0 0.101124 117712 75083 42629 20980 0 0 20980 AF 0 0.104869 112633 72166 40467 20519 0 0 20519 AF 0 0.108614 107126 68515 38611 19518 0 0 19518 AF 0 0.112360 102117 65365 36752 18758 0 0 18758 AF 0 0.116105 97764 62511 35253 18042 0 0 18042 AF 0 0.119850 93158 59448 33710 17272 0 0 17272 AF 0 0.123596 89671 57411 32260 16675 0 0 16675 AF 0 0.127341 86124 55028 31096 16178 0 0 16178 AF 0 0.131086 83115 52697 30418 15521 0 0 15521 AF 0 0.134831 80158 50943 29215 14975 0 0 14975 AF 0 0.138577 76640 49049 27591 14370 0 0 14370 AF 0 0.142322 74168 47173 26995 14111 0 0 14111 AF 0 0.146067 71289 45696 25593 13713 0 0 13713 AF 0 0.149813 69225 44168 25057 13056 0 0 13056 AF 0 0.153558 67484 43201 24283 13025 0 0 13025 AF 0 0.157303 64955 41536 23419 12428 0 0 12428 AF 0 0.161049 63158 40529 22629 12117 0 0 12117 AF 0 0.164794 61289 39231 22058 11729 0 0 11729 AF 0 0.168539 59552 37986 21566 11525 0 0 11525 AF 0 0.172285 57854 36745 21109 11217 0 0 11217 AF 0 0.176030 55751 35551 20200 10852 0 0 10852 AF 0 0.179775 54660 34911 19749 10518 0 0 10518 AF 0 0.183521 53307 33925 19382 10048 0 0 10048 AF 0 0.187266 51952 33124 18828 10009 0 0 10009 AF 0 0.191011 50226 32030 18196 9705 0 0 9705 AF 0 0.194757 48238 30777 17461 9418 0 0 9418 AF 0 0.198502 46982 29816 17166 9052 0 0 9052 AF 0 0.202247 46247 29335 16912 8853 0 0 8853 AF 0 0.205993 44604 28134 16470 8660 0 0 8660 AF 0 0.209738 43457 27402 16055 8423 0 0 8423 AF 0 0.213483 42124 26624 15500 8298 0 0 8298 AF 0 0.217228 41425 26265 15160 8097 0 0 8097 AF 0 0.220974 40525 25796 14729 7950 0 0 7950 AF 0 0.224719 39252 24814 14438 7687 0 0 7687 AF 0 0.228464 38189 24024 14165 7373 0 0 7373 AF 0 0.232210 37547 23826 13721 7468 0 0 7468 AF 0 0.235955 36629 23040 13589 7151 0 0 7151 AF 0 0.239700 35744 22451 13293 7170 0 0 7170 AF 0 0.243446 34883 22086 12797 6986 0 0 6986 AF 0 0.247191 34594 21847 12747 6900 0 0 6900 AF 0 0.250936 34043 21569 12474 6768 0 0 6768 AF 0 0.254682 33662 21245 12417 6514 0 0 6514 AF 0 0.258427 33293 21087 12206 6613 0 0 6613 AF 0 0.262172 32419 20394 12025 6506 0 0 6506 AF 0 0.265918 31848 20003 11845 6439 0 0 6439 AF 0 0.269663 31138 19664 11474 6209 0 0 6209 AF 0 0.273408 30323 19079 11244 6197 0 0 6197 AF 0 0.277154 30259 19117 11142 6007 0 0 6007 AF 0 0.280899 29551 18729 10822 5989 0 0 5989 AF 0 0.284644 29111 18292 10819 5868 0 0 5868 AF 0 0.288390 28862 18137 10725 5550 0 0 5550 AF 0 0.292135 28207 17857 10350 5559 0 0 5559 AF 0 0.295880 27811 17393 10418 5520 0 0 5520 AF 0 0.299625 27397 17326 10071 5527 0 0 5527 AF 0 0.303371 26596 16737 9859 5377 0 0 5377 AF 0 0.307116 26175 16461 9714 5281 0 0 5281 AF 0 0.310861 26018 16284 9734 5172 0 0 5172 AF 0 0.314607 25173 15887 9286 5057 0 0 5057 AF 0 0.318352 25004 15418 9586 4990 0 0 4990 AF 0 0.322097 25064 15823 9241 5019 0 0 5019 AF 0 0.325843 24507 15410 9097 4837 0 0 4837 AF 0 0.329588 24021 15069 8952 4762 0 0 4762 AF 0 0.333333 23951 14978 8973 4864 0 0 4864 AF 0 0.337079 23433 14646 8787 4791 0 0 4791 AF 0 0.340824 22964 14522 8442 4652 0 0 4652 AF 0 0.344569 22573 14234 8339 4613 0 0 4613 AF 0 0.348315 22645 14289 8356 4540 0 0 4540 AF 0 0.352060 22655 14147 8508 4655 0 0 4655 AF 0 0.355805 22049 13762 8287 4432 0 0 4432 AF 0 0.359551 21847 13663 8184 4460 0 0 4460 AF 0 0.363296 21858 13656 8202 4302 0 0 4302 AF 0 0.367041 21207 13261 7946 4303 0 0 4303 AF 0 0.370787 21172 13237 7935 4375 0 0 4375 AF 0 0.374532 21653 13623 8030 4236 0 0 4236 AF 0 0.378277 21196 13156 8040 4170 0 0 4170 AF 0 0.382022 21260 13404 7856 4211 0 0 4211 AF 0 0.385768 20753 13040 7713 4312 0 0 4312 AF 0 0.389513 20730 12967 7763 4260 0 0 4260 AF 0 0.393258 20738 13156 7582 4089 0 0 4089 AF 0 0.397004 20093 12580 7513 4114 0 0 4114 AF 0 0.400749 19939 12504 7435 4011 0 0 4011 AF 0 0.404494 19500 12301 7199 4050 0 0 4050 AF 0 0.408240 19401 12306 7095 3971 0 0 3971 AF 0 0.411985 19374 12151 7223 3960 0 0 3960 AF 0 0.415730 19235 11935 7300 4008 0 0 4008 AF 0 0.419476 18998 11974 7024 3900 0 0 3900 AF 0 0.423221 19044 12005 7039 3864 0 0 3864 AF 0 0.426966 18880 11852 7028 3748 0 0 3748 AF 0 0.430712 18537 11704 6833 3881 0 0 3881 AF 0 0.434457 18544 11584 6960 3743 0 0 3743 AF 0 0.438202 18556 11627 6929 3806 0 0 3806 AF 0 0.441948 18211 11495 6716 3896 0 0 3896 AF 0 0.445693 17830 11210 6620 3717 0 0 3717 AF 0 0.449438 17786 11154 6632 3702 0 0 3702 AF 0 0.453184 17982 11319 6663 3597 0 0 3597 AF 0 0.456929 18068 11357 6711 3642 0 0 3642 AF 0 0.460674 17961 11194 6767 3593 0 0 3593 AF 0 0.464419 17642 11164 6478 3596 0 0 3596 AF 0 0.468165 17650 11135 6515 3516 0 0 3516 AF 0 0.471910 17903 11208 6695 3569 0 0 3569 AF 0 0.475655 17445 11021 6424 3495 0 0 3495 AF 0 0.479401 17480 11055 6425 3472 0 0 3472 AF 0 0.483146 17215 10856 6359 3407 0 0 3407 AF 0 0.486891 16926 10638 6288 3361 0 0 3361 AF 0 0.490637 16969 10702 6267 3396 0 0 3396 AF 0 0.494382 16674 10529 6145 3433 0 0 3433 AF 0 0.498127 25086 15752 9334 5276 0 0 5276 AF 0 0.501873 16365 10344 6021 3531 0 0 3531 AF 0 0.505618 16751 10499 6252 3428 0 0 3428 AF 0 0.509363 16464 10342 6122 3437 0 0 3437 AF 0 0.513109 16303 10210 6093 3421 0 0 3421 AF 0 0.516854 16249 10294 5955 3360 0 0 3360 AF 0 0.520599 16364 10369 5995 3435 0 0 3435 AF 0 0.524345 16573 10509 6064 3421 0 0 3421 AF 0 0.528090 16110 10120 5990 3319 0 0 3319 AF 0 0.531835 16077 9936 6141 3259 0 0 3259 AF 0 0.535581 16073 10046 6027 3303 0 0 3303 AF 0 0.539326 16209 10207 6002 3315 0 0 3315 AF 0 0.543071 15982 10152 5830 3309 0 0 3309 AF 0 0.546816 15797 9957 5840 3319 0 0 3319 AF 0 0.550562 15898 10111 5787 3245 0 0 3245 AF 0 0.554307 16090 10203 5887 3213 0 0 3213 AF 0 0.558052 15671 9931 5740 3144 0 0 3144 AF 0 0.561798 15869 10140 5729 3233 0 0 3233 AF 0 0.565543 15705 9939 5766 3111 0 0 3111 AF 0 0.569288 15804 10041 5763 3072 0 0 3072 AF 0 0.573034 15708 10032 5676 3195 0 0 3195 AF 0 0.576779 15301 9614 5687 3203 0 0 3203 AF 0 0.580524 15548 9902 5646 3165 0 0 3165 AF 0 0.584270 15403 9757 5646 3172 0 0 3172 AF 0 0.588015 15332 9752 5580 3189 0 0 3189 AF 0 0.591760 15232 9751 5481 3127 0 0 3127 AF 0 0.595506 15817 9958 5859 3188 0 0 3188 AF 0 0.599251 15481 9805 5676 3162 0 0 3162 AF 0 0.602996 15244 9714 5530 3135 0 0 3135 AF 0 0.606742 15550 9939 5611 3133 0 0 3133 AF 0 0.610487 15584 9923 5661 3165 0 0 3165 AF 0 0.614232 15792 10039 5753 3215 0 0 3215 AF 0 0.617978 15764 10049 5715 3162 0 0 3162 AF 0 0.621723 16077 10094 5983 3247 0 0 3247 AF 0 0.625468 15875 10129 5746 3092 0 0 3092 AF 0 0.629213 15893 10197 5696 3123 0 0 3123 AF 0 0.632959 16213 10437 5776 3188 0 0 3188 AF 0 0.636704 16150 10312 5838 3085 0 0 3085 AF 0 0.640449 15959 10170 5789 3116 0 0 3116 AF 0 0.644195 16103 10200 5903 3060 0 0 3060 AF 0 0.647940 15937 10057 5880 3020 0 0 3020 AF 0 0.651685 15872 10072 5800 3151 0 0 3151 AF 0 0.655431 15946 10114 5832 3134 0 0 3134 AF 0 0.659176 15696 9959 5737 3099 0 0 3099 AF 0 0.662921 15903 10070 5833 3136 0 0 3136 AF 0 0.666667 16011 10187 5824 3102 0 0 3102 AF 0 0.670412 15945 10062 5883 3050 0 0 3050 AF 0 0.674157 15981 10192 5789 3072 0 0 3072 AF 0 0.677903 15924 10249 5675 3023 0 0 3023 AF 0 0.681648 15741 10025 5716 2946 0 0 2946 AF 0 0.685393 15683 9975 5708 3036 0 0 3036 AF 0 0.689139 15768 10101 5667 2983 0 0 2983 AF 0 0.692884 15730 9926 5804 2994 0 0 2994 AF 0 0.696629 16094 10281 5813 3005 0 0 3005 AF 0 0.700375 15821 10125 5696 2946 0 0 2946 AF 0 0.704120 15700 10076 5624 2963 0 0 2963 AF 0 0.707865 15805 10179 5626 2997 0 0 2997 AF 0 0.711610 15327 9890 5437 2901 0 0 2901 AF 0 0.715356 15795 10113 5682 2980 0 0 2980 AF 0 0.719101 15939 10152 5787 2880 0 0 2880 AF 0 0.722846 15605 9974 5631 2871 0 0 2871 AF 0 0.726592 15575 9970 5605 2839 0 0 2839 AF 0 0.730337 15398 9896 5502 2889 0 0 2889 AF 0 0.734082 15396 9970 5426 2792 0 0 2792 AF 0 0.737828 15221 9698 5523 2778 0 0 2778 AF 0 0.741573 14810 9441 5369 2824 0 0 2824 AF 0 0.745318 14779 9516 5263 2757 0 0 2757 AF 0 0.749064 14833 9532 5301 2665 0 0 2665 AF 0 0.752809 14825 9559 5266 2585 0 0 2585 AF 0 0.756554 15103 9645 5458 2768 0 0 2768 AF 0 0.760300 15156 9720 5436 2723 0 0 2723 AF 0 0.764045 15116 9662 5454 2722 0 0 2722 AF 0 0.767790 15325 9710 5615 2677 0 0 2677 AF 0 0.771536 15458 9880 5578 2782 0 0 2782 AF 0 0.775281 15528 10041 5487 2639 0 0 2639 AF 0 0.779026 15469 9891 5578 2534 0 0 2534 AF 0 0.782772 15534 10186 5348 2676 0 0 2676 AF 0 0.786517 15363 9841 5522 2658 0 0 2658 AF 0 0.790262 15285 9791 5494 2569 0 0 2569 AF 0 0.794007 15170 9797 5373 2603 0 0 2603 AF 0 0.797753 15159 9850 5309 2674 0 0 2674 AF 0 0.801498 15194 9812 5382 2670 0 0 2670 AF 0 0.805243 15372 9953 5419 2622 0 0 2622 AF 0 0.808989 15219 9817 5402 2617 0 0 2617 AF 0 0.812734 15436 9953 5483 2628 0 0 2628 AF 0 0.816479 15431 9926 5505 2662 0 0 2662 AF 0 0.820225 15366 9950 5416 2535 0 0 2535 AF 0 0.823970 15698 9997 5701 2716 0 0 2716 AF 0 0.827715 16046 10377 5669 2688 0 0 2688 AF 0 0.831461 16127 10492 5635 2613 0 0 2613 AF 0 0.835206 16252 10520 5732 2734 0 0 2734 AF 0 0.838951 16438 10701 5737 2779 0 0 2779 AF 0 0.842697 16453 10706 5747 2675 0 0 2675 AF 0 0.846442 16899 10892 6007 2787 0 0 2787 AF 0 0.850187 17365 11178 6187 2769 0 0 2769 AF 0 0.853933 17555 11373 6182 2798 0 0 2798 AF 0 0.857678 17796 11511 6285 2931 0 0 2931 AF 0 0.861423 18754 12109 6645 2769 0 0 2769 AF 0 0.865169 18866 12223 6643 2844 0 0 2844 AF 0 0.868914 19435 12628 6807 2925 0 0 2925 AF 0 0.872659 19658 12747 6911 3069 0 0 3069 AF 0 0.876404 20178 13322 6856 3120 0 0 3120 AF 0 0.880150 20618 13477 7141 3147 0 0 3147 AF 0 0.883895 21822 14338 7484 3185 0 0 3185 AF 0 0.887640 21864 14308 7556 3254 0 0 3254 AF 0 0.891386 22951 15094 7857 3300 0 0 3300 AF 0 0.895131 23593 15506 8087 3504 0 0 3504 AF 0 0.898876 25160 16649 8511 3480 0 0 3480 AF 0 0.902622 26380 17434 8946 3697 0 0 3697 AF 0 0.906367 27721 18494 9227 3590 0 0 3590 AF 0 0.910112 28792 19011 9781 3729 0 0 3729 AF 0 0.913858 29650 19702 9948 3785 0 0 3785 AF 0 0.917603 30567 20397 10170 3818 0 0 3818 AF 0 0.921348 31089 20692 10397 3799 0 0 3799 AF 0 0.925094 32306 21314 10992 3832 0 0 3832 AF 0 0.928839 32471 21654 10817 3882 0 0 3882 AF 0 0.932584 32701 21776 10925 3687 0 0 3687 AF 0 0.936330 32731 21800 10931 3656 0 0 3656 AF 0 0.940075 33763 22515 11248 3640 0 0 3640 AF 0 0.943820 33727 22431 11296 3496 0 0 3496 AF 0 0.947566 33565 22383 11182 3600 0 0 3600 AF 0 0.951311 33528 22454 11074 3296 0 0 3296 AF 0 0.955056 33277 22225 11052 3323 0 0 3323 AF 0 0.958801 32745 21836 10909 3124 0 0 3124 AF 0 0.962547 32558 21959 10599 3243 0 0 3243 AF 0 0.966292 33412 22274 11138 3073 0 0 3073 AF 0 0.970037 33737 22513 11224 3044 0 0 3044 AF 0 0.973783 33343 22210 11133 2922 0 0 2922 AF 0 0.977528 32840 21774 11066 2915 0 0 2915 AF 0 0.981273 32176 21298 10878 2752 0 0 2752 AF 0 0.985019 30924 20553 10371 2540 0 0 2540 AF 0 0.988764 16203 10575 5628 1843 0 0 1843 AF 0 0.992509 3484 1966 1518 1077 0 0 1077 AF 0 0.996255 61 32 29 35 0 0 35 # QUAL, Stats by quality # QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels QUAL 0 . 36761907 22416836 14345071 4955793 # IDD, InDel distribution: # IDD [2]id [3]length (deletions negative) [4]number of sites [5]number of genotypes [6]mean VAF IDD 0 -57 5 0 . IDD 0 -56 8 0 . IDD 0 -55 20 0 . IDD 0 -54 22 0 . IDD 0 -53 19 0 . IDD 0 -52 45 0 . IDD 0 -51 50 0 . IDD 0 -50 62 0 . IDD 0 -49 74 0 . IDD 0 -48 108 0 . IDD 0 -47 117 0 . IDD 0 -46 183 0 . IDD 0 -45 182 0 . IDD 0 -44 262 0 . IDD 0 -43 299 0 . IDD 0 -42 401 0 . IDD 0 -41 479 0 . IDD 0 -40 592 0 . IDD 0 -39 693 0 . IDD 0 -38 900 0 . IDD 0 -37 916 0 . IDD 0 -36 1409 0 . IDD 0 -35 1380 0 . IDD 0 -34 1929 0 . IDD 0 -33 2095 0 . IDD 0 -32 2546 0 . IDD 0 -31 2863 0 . IDD 0 -30 3552 0 . IDD 0 -29 3549 0 . IDD 0 -28 3968 0 . IDD 0 -27 4196 0 . IDD 0 -26 4815 0 . IDD 0 -25 4959 0 . IDD 0 -24 6383 0 . IDD 0 -23 5965 0 . IDD 0 -22 7849 0 . IDD 0 -21 9748 0 . IDD 0 -20 10465 0 . IDD 0 -19 11051 0 . IDD 0 -18 14304 0 . IDD 0 -17 13863 0 . IDD 0 -16 17501 0 . IDD 0 -15 22510 0 . IDD 0 -14 25242 0 . IDD 0 -13 27735 0 . IDD 0 -12 43104 0 . IDD 0 -11 41182 0 . IDD 0 -10 51304 0 . IDD 0 -9 60105 0 . IDD 0 -8 66433 0 . IDD 0 -7 71131 0 . IDD 0 -6 95912 0 . IDD 0 -5 107442 0 . IDD 0 -4 168970 0 . IDD 0 -3 271480 0 . IDD 0 -2 526457 0 . IDD 0 -1 1504163 0 . IDD 0 1 1372028 0 . IDD 0 2 473569 0 . IDD 0 3 234007 0 . IDD 0 4 149981 0 . IDD 0 5 75446 0 . IDD 0 6 60872 0 . IDD 0 7 40555 0 . IDD 0 8 31266 0 . IDD 0 9 23407 0 . IDD 0 10 19094 0 . IDD 0 11 15407 0 . IDD 0 12 15140 0 . IDD 0 13 10340 0 . IDD 0 14 9167 0 . IDD 0 15 7746 0 . IDD 0 16 5923 0 . IDD 0 17 4992 0 . IDD 0 18 4512 0 . IDD 0 19 3543 0 . IDD 0 20 3088 0 . IDD 0 21 2748 0 . IDD 0 22 1913 0 . IDD 0 23 1468 0 . IDD 0 24 1346 0 . IDD 0 25 1051 0 . IDD 0 26 874 0 . IDD 0 27 715 0 . IDD 0 28 560 0 . IDD 0 29 406 0 . IDD 0 30 344 0 . IDD 0 31 259 0 . IDD 0 32 197 0 . IDD 0 33 140 0 . IDD 0 34 113 0 . IDD 0 35 82 0 . IDD 0 36 35 0 . IDD 0 37 25 0 . IDD 0 38 10 0 . # ST, Substitution types: # ST [2]id [3]type [4]count ST 0 A>C 1638769 ST 0 A>G 4615555 ST 0 A>T 2511523 ST 0 C>A 3000359 ST 0 C>G 1309793 ST 0 C>T 7483547 ST 0 G>A 7476820 ST 0 G>C 1309685 ST 0 G>T 2997786 ST 0 T>A 2615359 ST 0 T>C 4773333 ST 0 T>G 1684812 # DP, Depth distribution # DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites (%) # PSC, Per-sample counts. Note that the ref/het/hom counts include only SNPs, for indels see PSI. The rest include both SNPs and indels. # PSC [2]id [3]sample [4]nRefHom [5]nNonRefHom [6]nHets [7]nTransitions [8]nTransversions [9]nIndels [10]average depth [11]nSingletons [12]nHapRef [13]nHapAlt [14]nMissing PSC 0 HM314 36275195 3261260 717342 2536053 1441525 655810 0.0 41647 0 0 0 PSC 0 HM313 36243934 3261645 741759 2550938 1451457 662313 0.0 35355 0 0 0 PSC 0 HM312 36291590 3227923 734699 2521498 1440051 655612 0.0 31988 0 0 0 PSC 0 HM310 36212161 3256510 778562 2569489 1464356 662885 0.0 40326 0 0 0 PSC 0 HM308 36242707 2623081 1396441 2567559 1450457 648927 0.0 42606 0 0 0 PSC 0 HM307 36672462 2902920 734731 2311208 1325405 599705 0.0 54700 0 0 0 PSC 0 HM306 37084676 2669052 601856 2084793 1185294 553614 0.0 27148 0 0 0 PSC 0 HM304 36810741 2895878 616645 2237834 1273822 586102 0.0 51612 0 0 0 PSC 0 HM302 36175776 3180097 887412 2577715 1488498 667143 0.0 31205 0 0 0 PSC 0 HM301 36367293 3247529 645081 2482324 1409296 649632 0.0 26797 0 0 0 PSC 0 HM299 36798587 2867094 654846 2252014 1268925 589124 0.0 36736 0 0 0 PSC 0 HM298 36435833 3099274 740676 2456231 1382634 634113 0.0 55987 0 0 0 PSC 0 HM296 36315449 3184528 760881 2515244 1429040 649166 0.0 79832 0 0 0 PSC 0 HM295 36344023 3262321 651024 2496183 1416153 652155 0.0 31428 0 0 0 PSC 0 HM290 36264697 3281723 700556 2539169 1442099 662552 0.0 21383 0 0 0 PSC 0 HM289 36378278 3234941 649507 2482782 1400694 646646 0.0 38524 0 0 0 PSC 0 HM288 37173801 2615354 579779 2039058 1155277 540312 0.0 26837 0 0 0 PSC 0 HM287 36276616 3297308 680065 2529646 1446782 655598 0.0 39594 0 0 0 PSC 0 HM286 36313512 3263714 678097 2517321 1423503 654222 0.0 22586 0 0 0 PSC 0 HM284 36358018 3270774 631438 2494468 1406829 649113 0.0 11880 0 0 0 PSC 0 HM283 36346338 3269378 646241 2493721 1421032 647387 0.0 27451 0 0 0 PSC 0 HM282 36413979 3247165 606655 2459605 1393394 641375 0.0 29504 0 0 0 PSC 0 HM280 36478167 3232884 560457 2426545 1365916 637730 0.0 14773 0 0 0 PSC 0 HM278 36176716 3266244 799087 2588575 1475706 667658 0.0 96590 0 0 0 PSC 0 HM276 36739617 2900736 666005 2274036 1291543 603896 0.0 71663 0 0 0 PSC 0 HM300 36340346 3190674 728996 2500726 1417880 649693 0.0 35410 0 0 0 PSC 0 HM316 36260702 3266069 725929 2542237 1448756 656816 0.0 69542 0 0 0 PSC 0 HM271 37548308 2300244 568422 1821179 1046594 492608 0.0 58379 0 0 0 PSC 0 HM270 37375330 2394654 621657 1916667 1098694 518013 0.0 26846 0 0 0 PSC 0 HM269 36305662 2978847 971319 2511154 1437752 654441 0.0 44233 0 0 0 PSC 0 HM268 36129212 3269278 835760 2591090 1512816 675690 0.0 126978 0 0 0 PSC 0 HM267 36348157 3137964 779750 2499501 1417191 643878 0.0 41340 0 0 0 PSC 0 HM266 36391738 3200630 673044 2453610 1419038 644309 0.0 66402 0 0 0 PSC 0 HM262 36815511 2896029 608446 2228173 1275342 589523 0.0 53640 0 0 0 PSC 0 HM260 36443119 3259232 564288 2428314 1394341 642535 0.0 35084 0 0 0 PSC 0 HM279 36523096 3077743 679806 2407451 1349104 629123 0.0 34208 0 0 0 PSC 0 HM259 36757666 2903232 646911 2264155 1284970 602093 0.0 51440 0 0 0 PSC 0 HM253 36582082 3202795 493204 2367646 1327573 630968 0.0 13641 0 0 0 PSC 0 HM293 36379862 3252504 630044 2476660 1404960 646910 0.0 32260 0 0 0 PSC 0 HM315 36258921 3190140 801931 2546200 1444824 658787 0.0 36736 0 0 0 PSC 0 HM245 35845819 3249877 1133834 2758327 1623596 682005 0.0 147716 0 0 0 PSC 0 HM285 36367018 3272587 621078 2488634 1404109 648692 0.0 11119 0 0 0 PSC 0 HM243 36117344 3258305 863844 2615241 1505313 671489 0.0 35211 0 0 0 PSC 0 HM241* 35268569 2758785 2126256 3114775 1767761 759980 0.0 62881 0 0 0 PSC 0 HM240 36460489 3201287 610539 2443152 1367789 636985 0.0 11130 0 0 0 PSC 0 HM237 36573919 3111369 592969 2375878 1327535 631182 0.0 12602 0 0 0 PSC 0 HM236 36402956 3180818 681032 2470100 1390764 644838 0.0 32504 0 0 0 PSC 0 HM224 36226542 3006970 1017906 2579922 1443596 659197 0.0 27708 0 0 0 PSC 0 HM234 36582995 3089323 610004 2373419 1324968 627221 0.0 20395 0 0 0 PSC 0 HM233 36387292 3278506 592353 2468853 1401020 651407 0.0 27506 0 0 0 PSC 0 HM232 36306881 3238970 712346 2522406 1427844 651655 0.0 34863 0 0 0 PSC 0 HM231 36396925 3040911 826540 2480578 1385759 645600 0.0 19322 0 0 0 PSC 0 HM226 36549276 3118498 609105 2390854 1335788 632648 0.0 24521 0 0 0 PSC 0 HM219 36589387 3044704 644758 2369346 1319103 630827 0.0 16539 0 0 0 PSC 0 HM218 36250660 3253482 747515 2547200 1452673 658347 0.0 47914 0 0 0 PSC 0 HM217 36453368 3227075 591121 2442534 1374727 637871 0.0 24340 0 0 0 PSC 0 HM305 36744353 2824099 745980 2278660 1290330 595516 0.0 38633 0 0 0 PSC 0 HM214 36423005 3214316 628784 2452599 1389466 643619 0.0 48589 0 0 0 PSC 0 HM212 36677315 2854590 747972 2316528 1284862 630346 0.0 11522 0 0 0 PSC 0 HM209 36491349 3032678 752224 2424509 1359365 633478 0.0 26957 0 0 0 PSC 0 HM256 40336825 121569 307369 239577 189166 142310 0.0 64815 0 0 0 PSC 0 HM206 36385411 3093762 786700 2475395 1403840 644338 0.0 28560 0 0 0 PSC 0 HM208 36177371 3146770 914709 2584717 1475367 671697 0.0 23938 0 0 0 PSC 0 HM205 36872976 2525526 939233 2215463 1248219 572281 0.0 39367 0 0 0 PSC 0 HM203 36045251 3240373 943037 2653586 1528455 681869 0.0 146809 0 0 0 PSC 0 HM235 36306841 3230038 720012 2523484 1425443 653002 0.0 26829 0 0 0 PSC 0 HM202 36960208 2596923 761705 2155509 1201918 591256 0.0 9063 0 0 0 PSC 0 HM201 36892118 2849183 582976 2197074 1234216 585137 0.0 32076 0 0 0 PSC 0 HM200 36251165 3198148 799342 2539617 1456644 661476 0.0 26305 0 0 0 PSC 0 HM040 36062951 3233359 931376 2644444 1518615 683532 0.0 34520 0 0 0 PSC 0 HM159 36182403 3072156 990312 2592920 1467932 666304 0.0 18793 0 0 0 PSC 0 HM039 36400312 3189486 667543 2459982 1396000 652483 0.0 53985 0 0 0 PSC 0 HM065 36872414 2626716 836081 2191309 1270165 575430 0.0 41315 0 0 0 PSC 0 HM077 35821677 3062451 1331340 2787494 1604543 696133 0.0 47405 0 0 0 PSC 0 HM036 36180564 3280854 776521 2572258 1483832 672446 0.0 73592 0 0 0 PSC 0 HM005 35876625 3063117 1271626 2753350 1579306 701050 0.0 36464 0 0 0 PSC 0 HM050 35593463 3330528 1246515 2900275 1674248 742873 0.0 52646 0 0 0 PSC 0 HM145 36344501 3264493 651976 2500528 1415037 648453 0.0 19844 0 0 0 PSC 0 HM028 36093985 3241553 904501 2622728 1521869 670606 0.0 44767 0 0 0 PSC 0 HM019 35500878 3209688 1463860 2921796 1749539 738256 0.0 177789 0 0 0 PSC 0 HM185 36254118 3143310 858684 2550415 1450125 654574 0.0 15331 0 0 0 PSC 0 HM056 37389726 2214167 790666 1894273 1109056 516583 0.0 89437 0 0 0 PSC 0 HM097 36306013 3171659 785417 2519578 1436464 646774 0.0 36182 0 0 0 PSC 0 HM027 36070730 3218482 948151 2618253 1546904 673380 0.0 92465 0 0 0 PSC 0 HM010 35705143 3330670 1146387 2835328 1639329 730980 0.0 56371 0 0 0 PSC 0 HM044 36123314 3241934 871927 2603364 1508824 673944 0.0 31599 0 0 0 PSC 0 HM026 36224827 3097162 933297 2554452 1474584 655465 0.0 47473 0 0 0 PSC 0 HM011 36303908 2817028 1138620 2521315 1432282 652942 0.0 69595 0 0 0 PSC 0 HM054 36676782 2838316 798378 2322690 1312908 596570 0.0 63668 0 0 0 PSC 0 HM025 35829477 3144051 1235503 2776996 1600508 703415 0.0 57749 0 0 0 PSC 0 HM002 35984228 3204333 1031051 2683944 1549329 692940 0.0 24343 0 0 0 PSC 0 HM016 35980394 3253956 994197 2669593 1576985 682548 0.0 81041 0 0 0 PSC 0 HM194 36331727 3245077 680616 2501676 1422994 652236 0.0 15075 0 0 0 PSC 0 HM151 36108702 3225099 903714 2627697 1499670 673106 0.0 32197 0 0 0 PSC 0 HM007 36328235 2979911 956349 2488101 1446142 647531 0.0 36458 0 0 0 PSC 0 HM074 36416936 3138296 718920 2462371 1393920 635479 0.0 54980 0 0 0 PSC 0 HM225 36126847 3266831 845042 2614277 1496190 671951 0.0 46777 0 0 0 PSC 0 HM013 36666147 2540496 1111584 2313851 1336408 593555 0.0 103731 0 0 0 PSC 0 HM003 36407293 2684038 1182959 2460404 1404498 638117 0.0 33741 0 0 0 PSC 0 HM188 36181872 3215333 849384 2595221 1468169 663821 0.0 11540 0 0 0 PSC 0 HM210 36143230 3249683 847361 2596362 1499044 670899 0.0 35535 0 0 0 PSC 0 HM207 36744416 2952280 592414 2275244 1268499 620414 0.0 16374 0 0 0 PSC 0 HM023 35935823 3220179 1068782 2725741 1561489 686563 0.0 46555 0 0 0 PSC 0 HM024 36716787 1634401 1975068 2300866 1307392 584251 0.0 59509 0 0 0 PSC 0 HM101 40632285 56250 102572 73346 85251 117166 0.0 18902 0 0 0 PSC 0 HM294 36492328 3123951 663334 2423076 1363218 630174 0.0 47857 0 0 0 PSC 0 HM191 36518937 3015902 752783 2400634 1366982 622203 0.0 26359 0 0 0 PSC 0 HM021 36112645 3258010 870474 2628777 1498147 669912 0.0 37903 0 0 0 PSC 0 HM221 36416613 3205774 641622 2456516 1389864 645711 0.0 50158 0 0 0 PSC 0 HM176 36838265 2726188 764211 2231451 1257749 581626 0.0 16711 0 0 0 PSC 0 HM037 36125673 3050805 1066635 2627724 1488406 667456 0.0 34721 0 0 0 PSC 0 HM006 35690109 2668273 1851586 2884554 1633249 702469 0.0 76455 0 0 0 PSC 0 HM078 36254722 3258281 731257 2532513 1455752 666099 0.0 44041 0 0 0 PSC 0 HM018 33203622 2416043 4297727 4216961 2492557 1001537 0.0 785789 0 0 0 PSC 0 HM045 36102962 3216663 914554 2616937 1512613 676958 0.0 31839 0 0 0 PSC 0 HM062 36494360 3208595 566159 2415126 1358753 640186 0.0 27471 0 0 0 PSC 0 HM042 36399381 3215285 650641 2468311 1396609 644340 0.0 31645 0 0 0 PSC 0 HM109 36044382 3206266 983624 2668903 1519652 676199 0.0 39312 0 0 0 PSC 0 HM034 35809241 3319247 1065498 2774932 1607536 718739 0.0 47623 0 0 0 PSC 0 HM114 36101648 3191275 943384 2620624 1512550 674564 0.0 53761 0 0 0 PSC 0 HM032 37252448 2529405 585102 1997259 1116312 542607 0.0 25986 0 0 0 PSC 0 HM229 36416308 3182997 667418 2463304 1386099 642951 0.0 31443 0 0 0 PSC 0 HM099 36034579 3241190 956958 2661834 1535103 677343 0.0 173498 0 0 0 PSC 0 HM215 36407113 3237256 618534 2459487 1395368 646715 0.0 52417 0 0 0 PSC 0 HM309 36680421 2912858 717685 2308900 1320569 598926 0.0 53824 0 0 0 PSC 0 HM008 36111068 3157396 967297 2624353 1498241 676559 0.0 64094 0 0 0 PSC 0 HM146 36018406 3194680 1012741 2680185 1525372 685968 0.0 24463 0 0 0 PSC 0 HM152 36626063 2870640 808474 2344840 1332931 605308 0.0 41898 0 0 0 PSC 0 HM038 37022711 2222878 1110572 2128769 1203552 554132 0.0 45605 0 0 0 PSC 0 HM178 36675277 2802453 837118 2320930 1317332 595628 0.0 35363 0 0 0 PSC 0 HM222 36287514 3242488 724184 2528076 1437448 655824 0.0 45355 0 0 0 PSC 0 HM149 36150449 3228480 864309 2604160 1487216 667435 0.0 29426 0 0 0 PSC 0 HM175 36697808 2724306 895042 2312342 1305722 593354 0.0 25456 0 0 0 PSC 0 HM238 36413642 3229223 626725 2463239 1391754 639954 0.0 25730 0 0 0 PSC 0 HM001 35588245 2869484 1729760 2920896 1675848 725974 0.0 45960 0 0 0 PSC 0 HM211 36523244 3175165 577586 2404406 1347480 633330 0.0 21671 0 0 0 PSC 0 HM197 36527948 3086978 663277 2393686 1355594 631394 0.0 21158 0 0 0 PSC 0 HM239 35951148 3075829 1198335 2723700 1548681 686302 0.0 17089 0 0 0 PSC 0 HM070 36428891 2984055 872478 2469389 1385787 625299 0.0 99323 0 0 0 PSC 0 HM015 36019774 3139375 1074218 2656919 1554720 678703 0.0 63764 0 0 0 PSC 0 HM124 37581691 2275270 564697 1797732 1041451 487587 0.0 40099 0 0 0 PSC 0 HM073 36662959 3090326 529955 2322410 1297004 626011 0.0 9126 0 0 0 PSC 0 HM004 35643911 3358885 1174305 2871938 1658849 736007 0.0 105717 0 0 0 PSC 0 HM012 36331493 2682567 1263771 2491182 1453631 633221 0.0 85197 0 0 0 PSC 0 HM115 36271076 3198548 783791 2539594 1441689 656353 0.0 35710 0 0 0 PSC 0 HM125 37134691 2424128 807127 2038252 1191488 544932 0.0 51682 0 0 0 PSC 0 HM060 35785194 3313670 1095355 2791910 1614872 718555 0.0 36619 0 0 0 PSC 0 HM041 36587635 2666200 1041469 2368307 1338129 615109 0.0 46823 0 0 0 PSC 0 HM014 36084732 3202862 946066 2633008 1514102 678039 0.0 41914 0 0 0 PSC 0 HM118 38070211 1810797 605743 1529681 886063 422565 0.0 35315 0 0 0 PSC 0 HM043 36246919 3202726 805751 2558175 1449153 654580 0.0 30114 0 0 0 PSC 0 HM035 36608386 3112878 559655 2350995 1320666 628378 0.0 22054 0 0 0 PSC 0 HM199 36165532 3203481 871379 2586967 1486463 670300 0.0 42075 0 0 0 PSC 0 HM228 36391828 3235306 636349 2474840 1395870 646042 0.0 30379 0 0 0 PSC 0 HM105 36192193 3191950 862722 2583637 1469733 663519 0.0 33900 0 0 0 PSC 0 HM020 35657740 3173279 1358701 2871821 1658053 722736 0.0 99418 0 0 0 PSC 0 HM033 36603384 3030064 652519 2350372 1331256 623628 0.0 31246 0 0 0 PSC 0 HM084 36522307 3209720 541564 2400097 1350333 635647 0.0 19280 0 0 0 PSC 0 HM156 36026719 3253184 946155 2675447 1522143 685283 0.0 14781 0 0 0 PSC 0 HM190 36950437 2817922 565834 2166365 1216550 575114 0.0 23946 0 0 0 PSC 0 HM096 36509774 3015985 751167 2411819 1354297 632875 0.0 24151 0 0 0 PSC 0 HM085 36585837 2922787 791777 2367902 1345485 609772 0.0 53181 0 0 0 PSC 0 HM189 37196201 2381672 796151 2010190 1166427 536239 0.0 37183 0 0 0 PSC 0 HM122 36891491 2830472 608778 2195480 1242919 578551 0.0 26494 0 0 0 PSC 0 HM277 36796537 2891756 625969 2246208 1270533 595460 0.0 55729 0 0 0 PSC 0 HM169 36795701 2737752 792220 2253388 1275266 584830 0.0 19142 0 0 0 PSC 0 HM179 36780136 2777399 763798 2261694 1278274 588957 0.0 25933 0 0 0 PSC 0 HM220 36651524 3038887 591638 2331006 1298549 627489 0.0 8414 0 0 0 PSC 0 HM162 36051511 3161137 1019016 2668084 1510368 679663 0.0 27157 0 0 0 PSC 0 HM009 36153216 3165052 929450 2615534 1477633 662725 0.0 30099 0 0 0 PSC 0 HM048 36080456 3133689 1017280 2642587 1506795 679645 0.0 41736 0 0 0 PSC 0 HM086 36625919 2890539 786574 2343529 1332315 607375 0.0 58923 0 0 0 PSC 0 HM095 35690032 3284807 1206690 2841896 1647193 731657 0.0 45579 0 0 0 PSC 0 HM046 36337307 2906529 1039926 2526722 1418337 627109 0.0 105191 0 0 0 PSC 0 HM170 37033501 1811817 1528617 2129982 1208998 537145 0.0 44830 0 0 0 PSC 0 HM168 36421790 2919855 939830 2464674 1393351 629848 0.0 51119 0 0 0 PSC 0 HM067 36541060 3079673 667528 2398804 1347409 621270 0.0 36473 0 0 0 PSC 0 HM165 35453636 2640671 2078899 3024119 1693130 740008 0.0 25536 0 0 0 PSC 0 HM071 36887290 2784831 653342 2202143 1234947 584610 0.0 98446 0 0 0 PSC 0 HM128 36672320 3052434 569859 2316895 1304563 614545 0.0 19256 0 0 0 PSC 0 HM213 36451458 3230935 589205 2443774 1375509 637708 0.0 18770 0 0 0 PSC 0 HM031 36939597 2833188 562420 2177164 1217638 574034 0.0 30997 0 0 0 PSC 0 HM187 36084689 3252116 898615 2645731 1503480 675488 0.0 17234 0 0 0 PSC 0 HM049 36151337 3205758 883138 2601879 1485594 670580 0.0 47304 0 0 0 PSC 0 HM051 37034363 2527725 768022 2122093 1172438 580064 0.0 9941 0 0 0 PSC 0 HM052 36316275 3094709 848611 2519087 1422868 651109 0.0 44631 0 0 0 PSC 0 HM055 36518900 2875084 902337 2404889 1371400 613779 0.0 105886 0 0 0 PSC 0 HM069 36277955 3260718 714529 2527240 1446971 656436 0.0 41239 0 0 0 PSC 0 HM053 36136190 3249441 852254 2607487 1492865 672564 0.0 52436 0 0 0 PSC 0 HM058 37804857 1953697 685351 1669855 967809 466916 0.0 34440 0 0 0 PSC 0 HM198 36165523 3235961 839342 2599554 1474448 669654 0.0 33058 0 0 0 PSC 0 HM059 36241834 3087658 931369 2555518 1462145 649588 0.0 37285 0 0 0 PSC 0 HM184 36282133 3053338 929708 2535789 1445935 645262 0.0 39988 0 0 0 PSC 0 HM192 36329598 3209967 720245 2504587 1424585 649945 0.0 19734 0 0 0 PSC 0 HM061 36169084 3173567 900853 2598351 1474747 666860 0.0 24757 0 0 0 PSC 0 HM063 37736187 2236431 465055 1722451 978404 471284 0.0 25345 0 0 0 PSC 0 HM064 36681070 2976410 642581 2312494 1305566 609398 0.0 35139 0 0 0 PSC 0 HM172 37056614 2561638 739764 2106857 1193352 552194 0.0 25696 0 0 0 PSC 0 HM066 36345514 3226569 689708 2496792 1418501 647701 0.0 28814 0 0 0 PSC 0 HM181 37294209 2208035 891457 1966921 1131361 516631 0.0 21104 0 0 0 PSC 0 HM068 37701588 2197472 526194 1740682 982223 484003 0.0 12306 0 0 0 PSC 0 HM072 36042401 2939493 1248929 2672833 1513999 680449 0.0 44416 0 0 0 PSC 0 HM075 36613501 2905630 780201 2333954 1350597 611055 0.0 42228 0 0 0 PSC 0 HM076 36030813 3174636 1032859 2671224 1534824 672410 0.0 77007 0 0 0 PSC 0 HM134 36177189 3221815 844786 2581313 1483920 666738 0.0 41223 0 0 0 PSC 0 HM133 36049447 3240076 942124 2650729 1530027 679105 0.0 40245 0 0 0 PSC 0 HM148 36096783 3260117 874709 2629423 1504044 678966 0.0 25252 0 0 0 PSC 0 HM079 36266755 3203879 785634 2540143 1448164 653980 0.0 53881 0 0 0 PSC 0 HM089 37004621 2798482 537453 2137507 1197596 568660 0.0 24984 0 0 0 PSC 0 HM080 36131675 3174661 940208 2618536 1494940 664060 0.0 58902 0 0 0 PSC 0 HM147 36092652 3228145 916975 2633590 1510059 673113 0.0 49766 0 0 0 PSC 0 HM082 36256619 3119741 881090 2535880 1463414 653636 0.0 42481 0 0 0 PSC 0 HM223 36424538 3156938 689122 2465760 1379343 638981 0.0 17667 0 0 0 PSC 0 HM083 36296168 3116796 850456 2527691 1438240 647142 0.0 47485 0 0 0 PSC 0 HM087 36604855 2916946 778933 2353495 1341109 609686 0.0 65285 0 0 0 PSC 0 HM143 36295920 3258925 702173 2525932 1434096 652686 0.0 29148 0 0 0 PSC 0 HM182 36279527 3026656 952955 2532349 1445882 651412 0.0 27451 0 0 0 PSC 0 HM173 36991606 2579582 778446 2141055 1215753 560713 0.0 23923 0 0 0 PSC 0 HM088 36544043 2910928 837154 2394492 1352229 618485 0.0 57465 0 0 0 PSC 0 HM091 36526923 2250476 1512571 2401718 1360003 620723 0.0 41398 0 0 0 PSC 0 HM092 37403830 2176505 832169 1906527 1101145 497341 0.0 49279 0 0 0 PSC 0 HM098 36722245 2836668 745490 2282336 1298768 605417 0.0 50602 0 0 0 PSC 0 HM153 36267937 3166154 824139 2539622 1449409 652069 0.0 31619 0 0 0 PSC 0 HM093 36740510 2681109 900452 2280854 1299438 588439 0.0 43141 0 0 0 PSC 0 HM057 36727381 2716345 871528 2285802 1300815 595047 0.0 37451 0 0 0 PSC 0 HM119 36778002 2709966 834816 2263962 1279759 587211 0.0 23592 0 0 0 PSC 0 HM106 36034801 3250448 945802 2671633 1523062 679917 0.0 46424 0 0 0 PSC 0 HM107 36144323 3208132 893491 2611261 1488845 664934 0.0 34876 0 0 0 PSC 0 HM297 36286757 3183361 787743 2531699 1438205 652294 0.0 84078 0 0 0 PSC 0 HM108 35959875 3066249 1196749 2715145 1546110 688671 0.0 32578 0 0 0 PSC 0 HM111 35911255 3015713 1298624 2743972 1568871 685301 0.0 65022 0 0 0 PSC 0 HM180 36781593 2710982 827851 2263196 1274217 590402 0.0 20102 0 0 0 PSC 0 HM112 35727820 3112065 1366333 2829253 1647593 705027 0.0 127103 0 0 0 PSC 0 HM117 38165265 1848184 480744 1475039 853272 414783 0.0 33122 0 0 0 PSC 0 HM120 37888468 1958828 609505 1626306 941229 452582 0.0 51471 0 0 0 PSC 0 HM164 36446331 2990909 845920 2453343 1382035 627706 0.0 53573 0 0 0 PSC 0 HM121 37037034 2726709 580352 2110240 1195958 565290 0.0 33735 0 0 0 PSC 0 HM227 36447392 3183868 641986 2447384 1377459 636419 0.0 22276 0 0 0 PSC 0 HM129 36522702 3007547 752843 2399972 1359325 626723 0.0 19738 0 0 0 PSC 0 HM127 36501012 3199397 570005 2410460 1358114 638627 0.0 19190 0 0 0 PSC 0 HM130 36593526 2908985 793918 2357294 1344443 613605 0.0 25084 0 0 0 PSC 0 HM131 36282707 3133751 838897 2524247 1447083 655122 0.0 36736 0 0 0 PSC 0 HM135 36139042 3241411 859012 2598619 1500418 671249 0.0 34428 0 0 0 PSC 0 HM138 36233487 3095648 925546 2552912 1466927 655924 0.0 54146 0 0 0 PSC 0 HM196 36210687 3219476 815802 2567921 1466086 664425 0.0 27987 0 0 0 PSC 0 HM139 36764034 2884210 665596 2268504 1280305 595763 0.0 34153 0 0 0 PSC 0 HM126 36186229 2971716 1089924 2588947 1471335 662628 0.0 24978 0 0 0 PSC 0 HM141 36206735 3244188 800048 2575389 1467640 659175 0.0 27382 0 0 0 PSC 0 HM150 36034817 3240904 951014 2672638 1517557 684656 0.0 17695 0 0 0 PSC 0 HM157 36075777 3227275 929008 2651112 1503551 679086 0.0 14120 0 0 0 PSC 0 HM154 36579818 2850618 867514 2364738 1352076 612619 0.0 52241 0 0 0 PSC 0 HM160 36044302 3195733 987939 2668226 1513719 683512 0.0 26033 0 0 0 PSC 0 HM081 36657498 2894374 756083 2327921 1321350 602248 0.0 54147 0 0 0 PSC 0 HM195 36445568 3215752 609154 2447027 1376989 638792 0.0 17484 0 0 0 PSC 0 HM161 35962757 3076503 1188881 2725161 1538391 683693 0.0 59557 0 0 0 PSC 0 HM163 35570330 2763793 1847439 2947807 1661035 731836 0.0 39649 0 0 0 PSC 0 HM166 36072881 3238498 923774 2652567 1508172 675834 0.0 27569 0 0 0 PSC 0 HM167 36007123 3199702 1025059 2694126 1529024 679256 0.0 32647 0 0 0 PSC 0 HM177 36718902 2828348 764822 2295159 1296720 598306 0.0 24881 0 0 0 PSC 0 HM155 36545865 2897617 850833 2392781 1354167 616695 0.0 48243 0 0 0 PSC 0 HM242 36179495 3258383 811116 2590325 1477813 661482 0.0 17227 0 0 0 PSC 0 HM183 36175940 3128823 942553 2591377 1478657 663297 0.0 15723 0 0 0 PSC 0 HM186 36110535 3237241 888757 2628211 1496190 674615 0.0 14041 0 0 0 PSC 0 HM047 36301726 3116068 843130 2526427 1431301 649918 0.0 49793 0 0 0 PSC 0 HM193 36747463 2736181 831011 2277394 1288679 595473 0.0 32893 0 0 0 PSC 0 HM244 36198938 3235112 815758 2579531 1470095 660382 0.0 30373 0 0 0 PSC 0 HM230 36276170 3213818 767893 2544497 1436092 652089 0.0 27289 0 0 0 # PSI, Per-Sample Indels. Note that alt-het genotypes with both ins and del allele are counted twice, in both nInsHets and nDelHets. # PSI [2]id [3]sample [4]in-frame [5]out-frame [6]not applicable [7]out/(in+out) ratio [8]nInsHets [9]nDelHets [10]nInsAltHoms [11]nDelAltHoms PSI 0 HM314 0 0 0 0.00 48687 69355 240502 298083 PSI 0 HM313 0 0 0 0.00 50850 71786 241137 299356 PSI 0 HM312 0 0 0 0.00 51250 71692 237914 295635 PSI 0 HM310 0 0 0 0.00 54872 74843 237791 296356 PSI 0 HM308 0 0 0 0.00 95113 129957 188238 237417 PSI 0 HM307 0 0 0 0.00 50444 71375 211302 267552 PSI 0 HM306 0 0 0 0.00 42716 62194 198220 251229 PSI 0 HM304 0 0 0 0.00 43903 64545 211896 266594 PSI 0 HM302 0 0 0 0.00 61024 83191 233350 290593 PSI 0 HM301 0 0 0 0.00 47167 65972 239724 297606 PSI 0 HM299 0 0 0 0.00 47492 68343 209596 264587 PSI 0 HM298 0 0 0 0.00 52949 73938 224988 283250 PSI 0 HM296 0 0 0 0.00 53975 73952 232467 289733 PSI 0 HM295 0 0 0 0.00 47627 66794 240193 298355 PSI 0 HM290 0 0 0 0.00 48201 68477 243744 302820 PSI 0 HM289 0 0 0 0.00 47190 68362 237808 294071 PSI 0 HM288 0 0 0 0.00 41151 61480 193043 245408 PSI 0 HM287 0 0 0 0.00 47592 68352 241366 299086 PSI 0 HM286 0 0 0 0.00 48150 68772 240670 297433 PSI 0 HM284 0 0 0 0.00 45135 64638 241878 298210 PSI 0 HM283 0 0 0 0.00 46346 66833 239305 295664 PSI 0 HM282 0 0 0 0.00 45389 65869 237937 292898 PSI 0 HM280 0 0 0 0.00 43731 63204 237982 293515 PSI 0 HM278 0 0 0 0.00 56552 79597 238010 294411 PSI 0 HM276 0 0 0 0.00 54047 74166 211239 265546 PSI 0 HM300 0 0 0 0.00 51814 72461 234565 291780 PSI 0 HM316 0 0 0 0.00 49368 70122 240062 298064 PSI 0 HM271 0 0 0 0.00 43360 62053 168449 219601 PSI 0 HM270 0 0 0 0.00 46119 66069 178300 228396 PSI 0 HM269 0 0 0 0.00 72134 100479 215708 267408 PSI 0 HM268 0 0 0 0.00 62406 86053 236579 291679 PSI 0 HM267 0 0 0 0.00 53921 75279 229704 285908 PSI 0 HM266 0 0 0 0.00 50657 71846 233168 289564 PSI 0 HM262 0 0 0 0.00 46289 66974 211523 265655 PSI 0 HM260 0 0 0 0.00 43812 63281 239309 296851 PSI 0 HM279 0 0 0 0.00 51512 72223 224418 282002 PSI 0 HM259 0 0 0 0.00 51154 72161 211991 267722 PSI 0 HM253 0 0 0 0.00 41803 61425 236465 291995 PSI 0 HM293 0 0 0 0.00 45494 65016 239865 297263 PSI 0 HM315 0 0 0 0.00 56382 79288 234233 289861 PSI 0 HM245 0 0 0 0.00 70030 91854 230057 291351 PSI 0 HM285 0 0 0 0.00 44715 64324 241602 298813 PSI 0 HM243 0 0 0 0.00 61528 79252 235544 296129 PSI 0 HM241* 0 0 0 0.00 135828 175766 199610 250970 PSI 0 HM240 0 0 0 0.00 45756 65807 234870 291283 PSI 0 HM237 0 0 0 0.00 52287 74010 225684 280114 PSI 0 HM236 0 0 0 0.00 52624 75412 229718 287995 PSI 0 HM224 0 0 0 0.00 71877 100214 217235 271132 PSI 0 HM234 0 0 0 0.00 51663 73254 224108 279120 PSI 0 HM233 0 0 0 0.00 46346 65185 241207 299620 PSI 0 HM232 0 0 0 0.00 50569 72151 234950 294888 PSI 0 HM231 0 0 0 0.00 62131 88006 221620 274964 PSI 0 HM226 0 0 0 0.00 51479 73734 226579 281746 PSI 0 HM219 0 0 0 0.00 56616 79460 220827 274945 PSI 0 HM218 0 0 0 0.00 52531 75322 235319 296130 PSI 0 HM217 0 0 0 0.00 45436 65493 234495 293322 PSI 0 HM305 0 0 0 0.00 52477 74216 207634 262127 PSI 0 HM214 0 0 0 0.00 49063 70992 232558 291903 PSI 0 HM212 0 0 0 0.00 70088 96707 208113 256676 PSI 0 HM209 0 0 0 0.00 57663 82156 219886 274761 PSI 0 HM256 0 0 0 0.00 23921 44718 22140 51957 PSI 0 HM206 0 0 0 0.00 57344 78423 225687 283912 PSI 0 HM208 0 0 0 0.00 64751 88739 231009 288282 PSI 0 HM205 0 0 0 0.00 64308 92531 182653 233920 PSI 0 HM203 0 0 0 0.00 64279 87022 236400 295210 PSI 0 HM235 0 0 0 0.00 51659 73286 234970 293994 PSI 0 HM202 0 0 0 0.00 70249 96006 189686 236510 PSI 0 HM201 0 0 0 0.00 44724 65508 210748 265022 PSI 0 HM200 0 0 0 0.00 57864 79242 233605 291757 PSI 0 HM040 0 0 0 0.00 69300 90638 231719 293043 PSI 0 HM159 0 0 0 0.00 70089 92657 223919 280756 PSI 0 HM039 0 0 0 0.00 51264 74161 233433 294511 PSI 0 HM065 0 0 0 0.00 59720 82748 189698 244450 PSI 0 HM077 0 0 0 0.00 83530 112266 223055 278652 PSI 0 HM036 0 0 0 0.00 55988 78688 238055 300802 PSI 0 HM005 0 0 0 0.00 93234 118678 216126 274448 PSI 0 HM050 0 0 0 0.00 96744 115738 233662 298280 PSI 0 HM145 0 0 0 0.00 45252 64997 240496 298495 PSI 0 HM028 0 0 0 0.00 63061 84684 231843 292030 PSI 0 HM019 0 0 0 0.00 99875 128000 226762 285223 PSI 0 HM185 0 0 0 0.00 59009 77895 230170 288412 PSI 0 HM056 0 0 0 0.00 62133 82150 162396 210929 PSI 0 HM097 0 0 0 0.00 53176 74505 230931 289064 PSI 0 HM027 0 0 0 0.00 64443 89086 230938 290080 PSI 0 HM010 0 0 0 0.00 90156 105961 235009 301109 PSI 0 HM044 0 0 0 0.00 64174 83058 232724 295010 PSI 0 HM026 0 0 0 0.00 64073 87324 223619 281525 PSI 0 HM011 0 0 0 0.00 90283 113793 196816 253647 PSI 0 HM054 0 0 0 0.00 54675 76976 205596 260373 PSI 0 HM025 0 0 0 0.00 88275 112190 222306 281988 PSI 0 HM002 0 0 0 0.00 83354 102578 222521 285798 PSI 0 HM016 0 0 0 0.00 69080 91777 230885 291960 PSI 0 HM194 0 0 0 0.00 49611 69113 238007 296372 PSI 0 HM151 0 0 0 0.00 61218 82819 235649 294459 PSI 0 HM007 0 0 0 0.00 74733 95845 209545 268671 PSI 0 HM074 0 0 0 0.00 52185 73867 227243 283116 PSI 0 HM225 0 0 0 0.00 58978 79938 235871 298275 PSI 0 HM013 0 0 0 0.00 81097 105260 176924 231665 PSI 0 HM003 0 0 0 0.00 90872 117921 187440 243386 PSI 0 HM188 0 0 0 0.00 58304 79264 234519 292578 PSI 0 HM210 0 0 0 0.00 61870 80550 234015 295488 PSI 0 HM207 0 0 0 0.00 53879 76641 219121 271740 PSI 0 HM023 0 0 0 0.00 69475 92042 232665 293374 PSI 0 HM024 0 0 0 0.00 117587 155310 132347 180454 PSI 0 HM101 0 0 0 0.00 15756 39912 16799 45128 PSI 0 HM294 0 0 0 0.00 49505 69175 227222 285237 PSI 0 HM191 0 0 0 0.00 52477 74284 220571 275698 PSI 0 HM021 0 0 0 0.00 63025 81559 232401 293925 PSI 0 HM221 0 0 0 0.00 50709 72530 232570 290828 PSI 0 HM176 0 0 0 0.00 54711 75130 199534 253157 PSI 0 HM037 0 0 0 0.00 71400 98852 221952 276491 PSI 0 HM006 0 0 0 0.00 111781 150757 193852 247865 PSI 0 HM078 0 0 0 0.00 54494 76031 237418 299160 PSI 0 HM018 0 0 0 0.00 268735 330965 177205 229157 PSI 0 HM045 0 0 0 0.00 67343 87086 230900 292726 PSI 0 HM062 0 0 0 0.00 45575 66014 235481 293903 PSI 0 HM042 0 0 0 0.00 48149 68348 235083 293579 PSI 0 HM109 0 0 0 0.00 64061 86673 234520 291939 PSI 0 HM034 0 0 0 0.00 83914 100635 236389 299082 PSI 0 HM114 0 0 0 0.00 64800 87320 230770 292812 PSI 0 HM032 0 0 0 0.00 50557 73575 184381 235089 PSI 0 HM229 0 0 0 0.00 50492 72799 231615 288912 PSI 0 HM099 0 0 0 0.00 62226 86135 236797 293164 PSI 0 HM215 0 0 0 0.00 48357 70957 234121 294100 PSI 0 HM309 0 0 0 0.00 50135 70316 212065 267322 PSI 0 HM008 0 0 0 0.00 78778 97192 219119 282868 PSI 0 HM146 0 0 0 0.00 74869 95717 228389 288177 PSI 0 HM152 0 0 0 0.00 55539 76701 208992 265109 PSI 0 HM038 0 0 0 0.00 77450 109585 159929 208537 PSI 0 HM178 0 0 0 0.00 56531 77881 203427 258708 PSI 0 HM222 0 0 0 0.00 52495 73943 235005 295344 PSI 0 HM149 0 0 0 0.00 58275 79084 236004 295010 PSI 0 HM175 0 0 0 0.00 60491 82914 198614 252325 PSI 0 HM238 0 0 0 0.00 46293 66233 234342 293892 PSI 0 HM001 0 0 0 0.00 114806 148139 203762 261089 PSI 0 HM211 0 0 0 0.00 45848 66564 232257 289456 PSI 0 HM197 0 0 0 0.00 49055 69538 228502 285170 PSI 0 HM239 0 0 0 0.00 80524 106088 221976 279018 PSI 0 HM070 0 0 0 0.00 63122 85492 210768 267286 PSI 0 HM015 0 0 0 0.00 77746 100350 219944 281983 PSI 0 HM124 0 0 0 0.00 40025 60794 168599 218933 PSI 0 HM073 0 0 0 0.00 48189 69453 227927 281279 PSI 0 HM004 0 0 0 0.00 92503 105860 235925 303051 PSI 0 HM012 0 0 0 0.00 84464 115568 191372 243307 PSI 0 HM115 0 0 0 0.00 54841 77816 234245 290331 PSI 0 HM125 0 0 0 0.00 63606 80295 174540 227373 PSI 0 HM060 0 0 0 0.00 84704 101466 235669 297907 PSI 0 HM041 0 0 0 0.00 74424 102665 192535 246731 PSI 0 HM014 0 0 0 0.00 72282 91194 226529 289142 PSI 0 HM118 0 0 0 0.00 41194 62829 137422 181947 PSI 0 HM043 0 0 0 0.00 56147 77596 232368 289379 PSI 0 HM035 0 0 0 0.00 45406 66516 230424 286927 PSI 0 HM199 0 0 0 0.00 63518 84935 231668 291249 PSI 0 HM228 0 0 0 0.00 47722 68538 235484 295175 PSI 0 HM105 0 0 0 0.00 59077 79971 234305 291141 PSI 0 HM020 0 0 0 0.00 94847 121277 224656 283393 PSI 0 HM033 0 0 0 0.00 48447 69617 224943 281507 PSI 0 HM084 0 0 0 0.00 43355 63007 236797 293235 PSI 0 HM156 0 0 0 0.00 68737 88775 234994 293856 PSI 0 HM190 0 0 0 0.00 43282 63749 207454 261429 PSI 0 HM096 0 0 0 0.00 57036 81078 221373 274396 PSI 0 HM085 0 0 0 0.00 55221 76478 212031 267109 PSI 0 HM189 0 0 0 0.00 57601 80049 174238 225383 PSI 0 HM122 0 0 0 0.00 43666 64617 208315 262738 PSI 0 HM277 0 0 0 0.00 49285 69930 211278 265925 PSI 0 HM169 0 0 0 0.00 57198 76312 198668 253531 PSI 0 HM179 0 0 0 0.00 54965 74315 202148 258461 PSI 0 HM220 0 0 0 0.00 54039 76704 222908 274815 PSI 0 HM162 0 0 0 0.00 71834 93162 229298 286540 PSI 0 HM009 0 0 0 0.00 61971 84087 229233 288395 PSI 0 HM048 0 0 0 0.00 72058 97551 226928 284466 PSI 0 HM086 0 0 0 0.00 55597 77083 210155 265616 PSI 0 HM095 0 0 0 0.00 92569 111510 233769 295198 PSI 0 HM046 0 0 0 0.00 68817 95078 204789 259769 PSI 0 HM170 0 0 0 0.00 96002 131637 134170 176877 PSI 0 HM168 0 0 0 0.00 67871 87430 209288 266465 PSI 0 HM067 0 0 0 0.00 49362 70354 222913 279547 PSI 0 HM165 0 0 0 0.00 131988 173061 194462 242660 PSI 0 HM071 0 0 0 0.00 55489 79472 199237 251576 PSI 0 HM128 0 0 0 0.00 42487 61899 227534 283370 PSI 0 HM213 0 0 0 0.00 44973 64312 235079 294098 PSI 0 HM031 0 0 0 0.00 41834 62538 207772 262678 PSI 0 HM187 0 0 0 0.00 62804 82166 235883 295600 PSI 0 HM049 0 0 0 0.00 62715 84809 232767 291433 PSI 0 HM051 0 0 0 0.00 70878 97911 183425 229172 PSI 0 HM052 0 0 0 0.00 62009 84438 221717 284177 PSI 0 HM055 0 0 0 0.00 61693 86466 206941 259881 PSI 0 HM069 0 0 0 0.00 50285 71239 239266 296511 PSI 0 HM053 0 0 0 0.00 59402 80465 236748 297065 PSI 0 HM058 0 0 0 0.00 59430 79104 140622 188722 PSI 0 HM198 0 0 0 0.00 59803 80248 236309 294356 PSI 0 HM059 0 0 0 0.00 61039 83628 224467 281506 PSI 0 HM184 0 0 0 0.00 59816 81170 224143 281052 PSI 0 HM192 0 0 0 0.00 51767 72473 234680 291871 PSI 0 HM061 0 0 0 0.00 60763 84376 232809 289930 PSI 0 HM063 0 0 0 0.00 37555 57127 164433 212844 PSI 0 HM064 0 0 0 0.00 48293 70455 217498 274086 PSI 0 HM172 0 0 0 0.00 52119 71879 187775 241365 PSI 0 HM066 0 0 0 0.00 47363 67862 238022 295186 PSI 0 HM181 0 0 0 0.00 60882 82963 162839 210936 PSI 0 HM068 0 0 0 0.00 46941 69589 161457 206885 PSI 0 HM072 0 0 0 0.00 84634 115665 214146 267586 PSI 0 HM075 0 0 0 0.00 55970 76499 211485 268066 PSI 0 HM076 0 0 0 0.00 66452 91643 229634 285866 PSI 0 HM134 0 0 0 0.00 58071 79387 235289 295059 PSI 0 HM133 0 0 0 0.00 62725 85753 236472 295206 PSI 0 HM148 0 0 0 0.00 58873 80335 240232 300465 PSI 0 HM079 0 0 0 0.00 54453 74351 232913 293243 PSI 0 HM089 0 0 0 0.00 41016 61232 206514 260677 PSI 0 HM080 0 0 0 0.00 61946 85434 229866 287912 PSI 0 HM147 0 0 0 0.00 61756 84144 234376 293922 PSI 0 HM082 0 0 0 0.00 62682 83484 223342 285384 PSI 0 HM223 0 0 0 0.00 51456 73148 229394 285884 PSI 0 HM083 0 0 0 0.00 58939 79400 225067 284807 PSI 0 HM087 0 0 0 0.00 55381 75695 211720 268017 PSI 0 HM143 0 0 0 0.00 48785 67860 239191 297694 PSI 0 HM182 0 0 0 0.00 65185 88599 220346 278413 PSI 0 HM173 0 0 0 0.00 55165 75544 188569 242354 PSI 0 HM088 0 0 0 0.00 60493 81902 210727 266550 PSI 0 HM091 0 0 0 0.00 99259 134369 170512 218142 PSI 0 HM092 0 0 0 0.00 52981 76736 160517 208064 PSI 0 HM098 0 0 0 0.00 55401 79580 208105 263363 PSI 0 HM153 0 0 0 0.00 55834 76146 231627 289367 PSI 0 HM093 0 0 0 0.00 59972 82467 196902 250106 PSI 0 HM057 0 0 0 0.00 60339 84218 198310 253340 PSI 0 HM119 0 0 0 0.00 55874 78828 199881 253573 PSI 0 HM106 0 0 0 0.00 65519 85315 235116 295066 PSI 0 HM107 0 0 0 0.00 61717 81793 231419 291074 PSI 0 HM297 0 0 0 0.00 56181 76550 231654 288996 PSI 0 HM108 0 0 0 0.00 81112 107571 223078 278284 PSI 0 HM111 0 0 0 0.00 79867 109315 221258 276168 PSI 0 HM180 0 0 0 0.00 60278 80442 198124 252518 PSI 0 HM112 0 0 0 0.00 84918 115374 225556 280617 PSI 0 HM117 0 0 0 0.00 34236 52951 141641 186656 PSI 0 HM120 0 0 0 0.00 43407 65894 148025 196117 PSI 0 HM164 0 0 0 0.00 62741 81073 213729 271294 PSI 0 HM121 0 0 0 0.00 42964 63355 202799 256986 PSI 0 HM227 0 0 0 0.00 48675 69484 230961 288101 PSI 0 HM129 0 0 0 0.00 51168 72067 224277 280061 PSI 0 HM127 0 0 0 0.00 41985 60900 239736 296732 PSI 0 HM130 0 0 0 0.00 53324 73386 216387 271437 PSI 0 HM131 0 0 0 0.00 58481 79753 229483 288438 PSI 0 HM135 0 0 0 0.00 58856 79702 236792 296930 PSI 0 HM138 0 0 0 0.00 62392 85445 225819 283402 PSI 0 HM196 0 0 0 0.00 58478 79406 234948 292574 PSI 0 HM139 0 0 0 0.00 48225 69628 211983 266831 PSI 0 HM126 0 0 0 0.00 70415 95913 221356 276072 PSI 0 HM141 0 0 0 0.00 52986 72609 238394 296095 PSI 0 HM150 0 0 0 0.00 69164 88759 233761 294012 PSI 0 HM157 0 0 0 0.00 65973 86365 234413 293307 PSI 0 HM154 0 0 0 0.00 58608 81341 208758 264982 PSI 0 HM160 0 0 0 0.00 71376 92340 231201 289652 PSI 0 HM081 0 0 0 0.00 53169 74607 209776 265768 PSI 0 HM195 0 0 0 0.00 44279 63407 237330 294552 PSI 0 HM161 0 0 0 0.00 80807 105231 220097 278860 PSI 0 HM163 0 0 0 0.00 121638 159118 200343 252800 PSI 0 HM166 0 0 0 0.00 63934 83798 235182 293872 PSI 0 HM167 0 0 0 0.00 68404 90450 231724 289760 PSI 0 HM177 0 0 0 0.00 55789 75461 205694 262319 PSI 0 HM155 0 0 0 0.00 63333 81944 206669 265847 PSI 0 HM242 0 0 0 0.00 55754 74557 235798 296234 PSI 0 HM183 0 0 0 0.00 62225 80915 231660 289357 PSI 0 HM186 0 0 0 0.00 64321 82906 234322 294049 PSI 0 HM047 0 0 0 0.00 61254 82223 223611 283963 PSI 0 HM193 0 0 0 0.00 59603 84483 199657 252793 PSI 0 HM244 0 0 0 0.00 55959 77240 235043 293073 PSI 0 HM230 0 0 0 0.00 53324 74549 232824 292331 # HWE # HWE [2]id [3]1st ALT allele frequency [4]Number of observations [5]25th percentile [6]median [7]75th percentile HWE 0 0.000000 15473692 0.000000 0.000000 0.000000 HWE 0 0.003745 4930960 0.000000 0.000000 0.000000 HWE 0 0.007491 2659131 0.000000 0.000000 0.010000 HWE 0 0.011236 1765817 0.000000 0.000000 0.010000 HWE 0 0.014981 1304388 0.000000 0.000000 0.010000 HWE 0 0.018727 1032648 0.000000 0.000000 0.010000 HWE 0 0.022472 850313 0.000000 0.000000 0.020000 HWE 0 0.026217 714617 0.000000 0.000000 0.020000 HWE 0 0.029963 611011 0.000000 0.000000 0.020000 HWE 0 0.033708 529455 0.000000 0.010000 0.020000 HWE 0 0.037453 464010 0.000000 0.010000 0.020000 HWE 0 0.041199 412092 0.000000 0.010000 0.030000 HWE 0 0.044944 368449 0.000000 0.010000 0.030000 HWE 0 0.048689 333893 0.000000 0.010000 0.030000 HWE 0 0.052434 300470 0.000000 0.010000 0.040000 HWE 0 0.056180 273819 0.000000 0.010000 0.040000 HWE 0 0.059925 252140 0.000000 0.010000 0.040000 HWE 0 0.063670 233040 0.000000 0.010000 0.040000 HWE 0 0.067416 215674 0.000000 0.010000 0.040000 HWE 0 0.071161 202061 0.000000 0.010000 0.040000 HWE 0 0.074906 187005 0.000000 0.010000 0.050000 HWE 0 0.078652 174068 0.000000 0.010000 0.050000 HWE 0 0.082397 163493 0.010000 0.010000 0.050000 HWE 0 0.086142 152643 0.010000 0.010000 0.050000 HWE 0 0.089888 144263 0.010000 0.010000 0.050000 HWE 0 0.093633 137471 0.010000 0.010000 0.060000 HWE 0 0.097378 129650 0.010000 0.020000 0.060000 HWE 0 0.101124 122959 0.010000 0.020000 0.060000 HWE 0 0.104869 118309 0.010000 0.020000 0.060000 HWE 0 0.108614 112237 0.010000 0.020000 0.070000 HWE 0 0.112360 107006 0.010000 0.020000 0.070000 HWE 0 0.116105 102616 0.010000 0.020000 0.070000 HWE 0 0.119850 97896 0.010000 0.020000 0.070000 HWE 0 0.123596 94155 0.010000 0.020000 0.070000 HWE 0 0.127341 90525 0.010000 0.020000 0.070000 HWE 0 0.131086 87457 0.010000 0.020000 0.080000 HWE 0 0.134831 84247 0.010000 0.020000 0.080000 HWE 0 0.138577 80577 0.010000 0.020000 0.080000 HWE 0 0.142322 78186 0.010000 0.020000 0.080000 HWE 0 0.146067 75287 0.010000 0.020000 0.080000 HWE 0 0.149813 72964 0.010000 0.020000 0.080000 HWE 0 0.153558 71274 0.010000 0.020000 0.090000 HWE 0 0.157303 68559 0.010000 0.020000 0.090000 HWE 0 0.161049 66836 0.010000 0.020000 0.090000 HWE 0 0.164794 64585 0.010000 0.020000 0.090000 HWE 0 0.168539 63013 0.010000 0.020000 0.100000 HWE 0 0.172285 61194 0.010000 0.020000 0.100000 HWE 0 0.176030 58940 0.010000 0.020000 0.100000 HWE 0 0.179775 57825 0.010000 0.020000 0.100000 HWE 0 0.183521 56021 0.010000 0.030000 0.100000 HWE 0 0.187266 55017 0.010000 0.030000 0.110000 HWE 0 0.191011 53264 0.010000 0.030000 0.110000 HWE 0 0.194757 51034 0.010000 0.030000 0.110000 HWE 0 0.198502 49715 0.010000 0.030000 0.110000 HWE 0 0.202247 48707 0.010000 0.030000 0.110000 HWE 0 0.205993 47134 0.010000 0.030000 0.110000 HWE 0 0.209738 45944 0.010000 0.030000 0.120000 HWE 0 0.213483 44671 0.010000 0.030000 0.120000 HWE 0 0.217228 43894 0.020000 0.030000 0.120000 HWE 0 0.220974 43067 0.020000 0.030000 0.130000 HWE 0 0.224719 41529 0.020000 0.030000 0.130000 HWE 0 0.228464 40264 0.020000 0.030000 0.130000 HWE 0 0.232210 39675 0.020000 0.030000 0.140000 HWE 0 0.235955 38716 0.020000 0.030000 0.140000 HWE 0 0.239700 37881 0.020000 0.030000 0.140000 HWE 0 0.243446 37085 0.020000 0.040000 0.140000 HWE 0 0.247191 36642 0.020000 0.040000 0.150000 HWE 0 0.250936 36095 0.020000 0.040000 0.140000 HWE 0 0.254682 35636 0.020000 0.040000 0.150000 HWE 0 0.258427 35357 0.020000 0.040000 0.150000 HWE 0 0.262172 34553 0.020000 0.040000 0.160000 HWE 0 0.265918 33777 0.020000 0.040000 0.150000 HWE 0 0.269663 33022 0.020000 0.040000 0.160000 HWE 0 0.273408 32241 0.020000 0.040000 0.170000 HWE 0 0.277154 32088 0.020000 0.040000 0.170000 HWE 0 0.280899 31561 0.020000 0.040000 0.170000 HWE 0 0.284644 31004 0.020000 0.040000 0.170000 HWE 0 0.288390 30533 0.020000 0.040000 0.180000 HWE 0 0.292135 29945 0.020000 0.040000 0.180000 HWE 0 0.295880 29544 0.020000 0.040000 0.180000 HWE 0 0.299625 29220 0.020000 0.040000 0.190000 HWE 0 0.303371 28268 0.020000 0.040000 0.190000 HWE 0 0.307116 27879 0.020000 0.040000 0.200000 HWE 0 0.310861 27655 0.020000 0.040000 0.200000 HWE 0 0.314607 26845 0.020000 0.040000 0.210000 HWE 0 0.318352 26623 0.020000 0.040000 0.200000 HWE 0 0.322097 26645 0.020000 0.040000 0.210000 HWE 0 0.325843 25993 0.020000 0.040000 0.210000 HWE 0 0.329588 25511 0.020000 0.040000 0.220000 HWE 0 0.333333 25492 0.020000 0.050000 0.210000 HWE 0 0.337079 24956 0.020000 0.050000 0.220000 HWE 0 0.340824 24404 0.020000 0.050000 0.240000 HWE 0 0.344569 24092 0.020000 0.050000 0.220000 HWE 0 0.348315 23999 0.020000 0.050000 0.240000 HWE 0 0.352060 24077 0.020000 0.050000 0.220000 HWE 0 0.355805 23445 0.020000 0.050000 0.230000 HWE 0 0.359551 23279 0.020000 0.050000 0.240000 HWE 0 0.363296 23214 0.020000 0.050000 0.230000 HWE 0 0.367041 22630 0.020000 0.050000 0.240000 HWE 0 0.370787 22651 0.030000 0.050000 0.230000 HWE 0 0.374532 23071 0.030000 0.050000 0.240000 HWE 0 0.378277 22545 0.030000 0.050000 0.240000 HWE 0 0.382022 22611 0.030000 0.050000 0.240000 HWE 0 0.385768 22327 0.030000 0.050000 0.250000 HWE 0 0.389513 22171 0.030000 0.050000 0.250000 HWE 0 0.393258 21943 0.030000 0.050000 0.250000 HWE 0 0.397004 21480 0.030000 0.050000 0.250000 HWE 0 0.400749 21257 0.030000 0.050000 0.250000 HWE 0 0.404494 20811 0.030000 0.050000 0.260000 HWE 0 0.408240 20710 0.030000 0.050000 0.250000 HWE 0 0.411985 20615 0.030000 0.050000 0.250000 HWE 0 0.415730 20684 0.030000 0.050000 0.250000 HWE 0 0.419476 20329 0.030000 0.050000 0.250000 HWE 0 0.423221 20393 0.030000 0.050000 0.250000 HWE 0 0.426966 20089 0.030000 0.050000 0.250000 HWE 0 0.430712 19915 0.030000 0.050000 0.250000 HWE 0 0.434457 19765 0.030000 0.050000 0.250000 HWE 0 0.438202 19849 0.030000 0.050000 0.240000 HWE 0 0.441948 19533 0.030000 0.050000 0.260000 HWE 0 0.445693 19048 0.030000 0.050000 0.250000 HWE 0 0.449438 19111 0.030000 0.050000 0.250000 HWE 0 0.453184 19176 0.030000 0.050000 0.240000 HWE 0 0.456929 19268 0.030000 0.050000 0.240000 HWE 0 0.460674 19204 0.030000 0.050000 0.240000 HWE 0 0.464419 18869 0.030000 0.050000 0.220000 HWE 0 0.468165 18836 0.030000 0.050000 0.230000 HWE 0 0.471910 19227 0.030000 0.050000 0.230000 HWE 0 0.475655 18709 0.030000 0.050000 0.230000 HWE 0 0.479401 18639 0.030000 0.050000 0.230000 HWE 0 0.483146 18349 0.030000 0.050000 0.220000 HWE 0 0.486891 18056 0.030000 0.050000 0.210000 HWE 0 0.490637 18135 0.030000 0.050000 0.210000 HWE 0 0.494382 17902 0.030000 0.050000 0.220000 HWE 0 0.498127 26912 0.030000 0.050000 0.220000 HWE 0 0.501873 17667 0.030000 0.050000 0.220000 HWE 0 0.505618 17946 0.030000 0.050000 0.210000 HWE 0 0.509363 17674 0.020000 0.050000 0.200000 HWE 0 0.513109 17563 0.030000 0.050000 0.200000 HWE 0 0.516854 17424 0.030000 0.050000 0.200000 HWE 0 0.520599 17577 0.020000 0.050000 0.200000 HWE 0 0.524345 17842 0.020000 0.050000 0.190000 HWE 0 0.528090 17204 0.020000 0.050000 0.180000 HWE 0 0.531835 17198 0.020000 0.050000 0.190000 HWE 0 0.535581 17207 0.020000 0.050000 0.180000 HWE 0 0.539326 17359 0.020000 0.050000 0.170000 HWE 0 0.543071 17169 0.020000 0.040000 0.170000 HWE 0 0.546816 17051 0.020000 0.040000 0.170000 HWE 0 0.550562 16965 0.020000 0.040000 0.160000 HWE 0 0.554307 17213 0.020000 0.040000 0.160000 HWE 0 0.558052 16789 0.020000 0.040000 0.150000 HWE 0 0.561798 16990 0.020000 0.040000 0.160000 HWE 0 0.565543 16785 0.020000 0.040000 0.150000 HWE 0 0.569288 16856 0.020000 0.040000 0.150000 HWE 0 0.573034 16831 0.020000 0.040000 0.140000 HWE 0 0.576779 16494 0.020000 0.040000 0.140000 HWE 0 0.580524 16675 0.020000 0.040000 0.140000 HWE 0 0.584270 16561 0.020000 0.040000 0.140000 HWE 0 0.588015 16459 0.020000 0.040000 0.140000 HWE 0 0.591760 16276 0.020000 0.040000 0.130000 HWE 0 0.595506 16924 0.020000 0.040000 0.130000 HWE 0 0.599251 16558 0.020000 0.040000 0.120000 HWE 0 0.602996 16344 0.020000 0.040000 0.120000 HWE 0 0.606742 16639 0.020000 0.040000 0.120000 HWE 0 0.610487 16665 0.020000 0.040000 0.110000 HWE 0 0.614232 16876 0.020000 0.040000 0.110000 HWE 0 0.617978 16915 0.020000 0.040000 0.100000 HWE 0 0.621723 17186 0.020000 0.040000 0.110000 HWE 0 0.625468 16960 0.020000 0.040000 0.100000 HWE 0 0.629213 16997 0.020000 0.040000 0.100000 HWE 0 0.632959 17275 0.020000 0.040000 0.100000 HWE 0 0.636704 17190 0.020000 0.040000 0.090000 HWE 0 0.640449 16981 0.020000 0.040000 0.100000 HWE 0 0.644195 17082 0.020000 0.040000 0.090000 HWE 0 0.647940 16864 0.020000 0.040000 0.090000 HWE 0 0.651685 16971 0.020000 0.040000 0.090000 HWE 0 0.655431 16978 0.020000 0.040000 0.090000 HWE 0 0.659176 16742 0.020000 0.040000 0.090000 HWE 0 0.662921 16978 0.020000 0.030000 0.080000 HWE 0 0.666667 17041 0.020000 0.030000 0.080000 HWE 0 0.670412 16883 0.020000 0.030000 0.080000 HWE 0 0.674157 16918 0.020000 0.030000 0.080000 HWE 0 0.677903 16878 0.020000 0.030000 0.070000 HWE 0 0.681648 16703 0.020000 0.030000 0.080000 HWE 0 0.685393 16726 0.020000 0.030000 0.070000 HWE 0 0.689139 16756 0.020000 0.030000 0.070000 HWE 0 0.692884 16735 0.020000 0.030000 0.070000 HWE 0 0.696629 17087 0.020000 0.030000 0.070000 HWE 0 0.700375 16716 0.020000 0.030000 0.070000 HWE 0 0.704120 16662 0.020000 0.030000 0.070000 HWE 0 0.707865 16819 0.020000 0.030000 0.070000 HWE 0 0.711610 16309 0.020000 0.030000 0.070000 HWE 0 0.715356 16713 0.020000 0.030000 0.070000 HWE 0 0.719101 16725 0.020000 0.030000 0.070000 HWE 0 0.722846 16482 0.020000 0.030000 0.070000 HWE 0 0.726592 16446 0.010000 0.030000 0.060000 HWE 0 0.730337 16310 0.010000 0.030000 0.060000 HWE 0 0.734082 16274 0.010000 0.030000 0.060000 HWE 0 0.737828 16061 0.010000 0.030000 0.070000 HWE 0 0.741573 15756 0.010000 0.030000 0.070000 HWE 0 0.745318 15645 0.010000 0.030000 0.070000 HWE 0 0.749064 15664 0.010000 0.030000 0.070000 HWE 0 0.752809 15535 0.010000 0.030000 0.060000 HWE 0 0.756554 15909 0.010000 0.030000 0.060000 HWE 0 0.760300 15983 0.010000 0.020000 0.060000 HWE 0 0.764045 15946 0.010000 0.020000 0.060000 HWE 0 0.767790 16052 0.010000 0.020000 0.060000 HWE 0 0.771536 16296 0.010000 0.020000 0.060000 HWE 0 0.775281 16225 0.010000 0.020000 0.060000 HWE 0 0.779026 16125 0.010000 0.020000 0.050000 HWE 0 0.782772 16272 0.010000 0.020000 0.050000 HWE 0 0.786517 16159 0.010000 0.020000 0.050000 HWE 0 0.790262 15955 0.010000 0.020000 0.050000 HWE 0 0.794007 15951 0.010000 0.020000 0.050000 HWE 0 0.797753 15938 0.010000 0.020000 0.050000 HWE 0 0.801498 16053 0.010000 0.020000 0.050000 HWE 0 0.805243 16000 0.010000 0.020000 0.050000 HWE 0 0.808989 15903 0.010000 0.020000 0.050000 HWE 0 0.812734 16216 0.010000 0.020000 0.050000 HWE 0 0.816479 16240 0.010000 0.020000 0.050000 HWE 0 0.820225 16033 0.010000 0.020000 0.050000 HWE 0 0.823970 16526 0.010000 0.020000 0.050000 HWE 0 0.827715 16747 0.010000 0.020000 0.040000 HWE 0 0.831461 16798 0.010000 0.020000 0.040000 HWE 0 0.835206 17010 0.010000 0.020000 0.040000 HWE 0 0.838951 17195 0.010000 0.020000 0.040000 HWE 0 0.842697 17110 0.010000 0.020000 0.040000 HWE 0 0.846442 17651 0.010000 0.020000 0.040000 HWE 0 0.850187 18054 0.010000 0.020000 0.040000 HWE 0 0.853933 18321 0.010000 0.020000 0.040000 HWE 0 0.857678 18700 0.010000 0.020000 0.040000 HWE 0 0.861423 19403 0.010000 0.020000 0.040000 HWE 0 0.865169 19630 0.010000 0.020000 0.030000 HWE 0 0.868914 20091 0.010000 0.010000 0.030000 HWE 0 0.872659 20397 0.010000 0.010000 0.030000 HWE 0 0.876404 20963 0.010000 0.010000 0.030000 HWE 0 0.880150 21458 0.010000 0.010000 0.030000 HWE 0 0.883895 22656 0.010000 0.010000 0.030000 HWE 0 0.887640 22693 0.010000 0.010000 0.020000 HWE 0 0.891386 23696 0.010000 0.010000 0.020000 HWE 0 0.895131 24577 0.010000 0.010000 0.020000 HWE 0 0.898876 25988 0.000000 0.010000 0.020000 HWE 0 0.902622 27343 0.000000 0.010000 0.020000 HWE 0 0.906367 28423 0.000000 0.010000 0.020000 HWE 0 0.910112 29563 0.000000 0.010000 0.020000 HWE 0 0.913858 30565 0.000000 0.010000 0.020000 HWE 0 0.917603 31542 0.000000 0.010000 0.020000 HWE 0 0.921348 31841 0.000000 0.010000 0.020000 HWE 0 0.925094 33185 0.000000 0.010000 0.010000 HWE 0 0.928839 33381 0.000000 0.010000 0.010000 HWE 0 0.932584 33438 0.000000 0.010000 0.010000 HWE 0 0.936330 33543 0.000000 0.010000 0.010000 HWE 0 0.940075 34411 0.000000 0.010000 0.010000 HWE 0 0.943820 34267 0.000000 0.010000 0.010000 HWE 0 0.947566 34350 0.000000 0.000000 0.010000 HWE 0 0.951311 34134 0.000000 0.000000 0.010000 HWE 0 0.955056 33882 0.000000 0.000000 0.010000 HWE 0 0.958801 33359 0.000000 0.000000 0.010000 HWE 0 0.962547 33266 0.000000 0.000000 0.010000 HWE 0 0.966292 34005 0.000000 0.000000 0.010000 HWE 0 0.970037 34287 0.000000 0.000000 0.010000 HWE 0 0.973783 33976 0.000000 0.000000 0.000000 HWE 0 0.977528 33521 0.000000 0.000000 0.000000 HWE 0 0.981273 32952 0.000000 0.000000 0.000000 HWE 0 0.985019 31831 0.000000 0.000000 0.000000 HWE 0 0.988764 17277 0.000000 0.000000 0.000000 HWE 0 0.992509 4340 0.000000 0.000000 0.000000 HWE 0 0.996255 87 0.000000 0.000000 0.000000