---
identifier: mixed.tcb1.div.Li_Acharya_2012

provenance: "The original repository was http://medsa.comparative-legumes.org/, which has been replaced by this repository at http://legumeinfo.org/data/Medicago_sativa/"

source: "http://legumeinfo.org/data/Medicago_sativa/"

synopsis: genotype variants called with respect to a transcriptome assembly, from 27 alfalfa genotypes, from Li, Acharya et al., 2012

scientific_name: Medicago sativa

taxid: 3879

bioproject:

scientific_name_abbrev: medsa

genotype:
  - 27 alfalfa genotypes

description: "Variants (SNPs and indels) called on 27 Medicago sativa accessions, called with respect to a consensus assembly based on those accessions. The accessions included 27 alfalfa genotypes, including elite breeding genotypes, parents of mapping populations, and unimproved wild genotypes (Li, Acharya et al., 2012; DOI: 10.1186/1471-2164-13-568)"

original_file_creation_date: "2012-02-01"

local_file_creation_date: "2016-12-01"

publication_doi: 10.1186/1471-2164-13-568

dataset_release_date: "2016-12-01"

publication_title: "Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing"

contributors: "see publication authors"

data_curators: Jacqueline Campbell, Steven Cannon

public_access_level: public

license: open

keywords: alfalfa, Medicago sativa, genotype, diversity, structure

citation: "Li, X., Acharya, A., Farmer, A. D., Crow, J. A., Bharti, A. K., Kramer, R. S., Wei, Y., Han, Y., Gou, J., May, G. D., Monteros, M. J., Brummer, E. C. (2012) Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing. BMC Genomics 201213:568."