---
identifier: Medicago.pan3.9X6B

provenance: "The files in this directory are a product of the staff of the SoyBase and LegumeInfo project teams. The method is described here: https://github.com/legumeinfo/pandagma"

source: "https://data.legumeinfo.org"

synopsis: "Pangene set for Medicago species, based primarily on M. truncatula but also including M. sativa. This pangene set includes 21 annotation sets."

scientific_name: Medicago

scientific_name_abbrev: Medicago

taxid: 3877

annotations_main:
  - medsa.XinJiangDaYe_hap1.gnm1.ann1
  - medsa.XinJiangDaYe_hap2.gnm1.ann1
  - medsa.XinJiangDaYe_hap3.gnm1.ann1
  - medsa.XinJiangDaYe_hap4.gnm1.ann1
  - medtr.A17_HM341.gnm4.ann2
  - medtr.A17.gnm5.ann1_6
  - medtr.HM078.gnm1.ann1
  - medtr.R108.gnmHiC_1.ann1

annotations_extra:
  - medtr.HM004.gnm1.ann1
  - medtr.HM010.gnm1.ann1
  - medtr.HM022.gnm1.ann1
  - medtr.HM023.gnm1.ann1
  - medtr.HM034.gnm1.ann1
  - medtr.HM050.gnm1.ann1
  - medtr.HM056.gnm1.ann1
  - medtr.HM058.gnm1.ann1
  - medtr.HM060.gnm1.ann1
  - medtr.HM095.gnm1.ann1
  - medtr.HM125.gnm1.ann1
  - medtr.HM129.gnm1.ann1
  - medtr.HM185.gnm1.ann1
  - medtr.HM324.gnm1.ann1
  - medtr.R108_HM340.gnm1.ann1

description: "Pan-gene set for Medicago species, spanning 2 species and 21 annotation sets, calculated using the pandagma pipeline, version 2.0 (February, 2024)"

original_file_creation_date: "2024-02-14"

local_file_creation_date: "2024-02-14"

dataset_release_date: "2024-02-14"

contributors: Steven Cannon

data_curators: Steven Cannon

public_access_level: public

license: Open

keywords: Medicago, barrel medic, alfalfa, lucerne, pan-gene, pangene, orthogroup