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# filename in this repository: description
glyma.Lee.gnm1.div.96SR.genes_not_in_Lee.gff3.gz: The annotation in gff3 format, predicted from both the main genome and additional fragments from this study.
glyma.Lee.gnm1.div.96SR.protein_Lee_and_other.fna.gz: Protein sequences, predicted from both the main genome and additional fragments from this study.
glyma.Lee.gnm1.pan.96SR.gene_pav_matrix.txt.gz: PAV matrix, one individual per column, one gene per row. 1 is present and 0 is missing.
glyma.Lee.gnm1.pan.96SR.seq_not_in_Lee.fna.gz: Genes and gene fragments predicted in genomic sequence from this study and not in the Lee genome. Note differs from original file Lee.pan.renamed.fa by exclusion of the main Lee genome (pseudomolecules and scaffolds).
soybean_pan_pav.matrix_gene.txt.gz: counts of variants observed for each gene. Derived from glyma.Lee.gnm1.pan.96SR.gene_pav_matrix.txt.