---
identifier: mixed.gwas.Bao_Vuong_2014

taxid: 3847

scientific_name: Glycine max

scientific_name_abbrev: glyma

genotype: 
  - 282 representative accessions from the University of Minnesota soybean breeding program

synopsis: 282 representative accessions from the University of Minnesota soybean breeding program using a genome-wide panel of 1536 single nucleotide polymorphism (SNP) markers and evaluated plant responses to SCN HG type 0

genotyping_platform: 1536_USLP1

genotyping_method: Illumina GoldenGate SNP assay with the Universal Soy Linkage Panel 1.0 

description: DNA samples were genotyped using an Illumina GoldenGate SNP assay with the Universal Soy Linkage Panel 1.0 of 1536 single nucleotide polymorphism (SNP) markers. The SNPs with >5% minor allele frequency (MAF) and a missing data rate < 50% were retained, followed by imputation of missing SNP data based on population mean of each marker. Total 1247 SNP markers passed the filters and were used in the subsequent analysis.

data_curators: Samuel Clouse, Steven Cannon

publication_doi: 10.3835/plantgenome2013.11.0039

citation: "Bao, Y., Vuong, T., Meinhardt, C., Tiffin, P., Denny, R., Chen, S., Nguyen, H., Orf, J. and Young, N., 2014. Potential of Association Mapping and Genomic Selection to Explore PI 88788 Derived Soybean Cyst Nematode Resistance. The Plant Genome, 7(3)."

publication_title: Potential of Association Mapping and Genomic Selection to Explore PI 88788 Derived Soybean Cyst Nematode Resistance

contributors: Bao Y., Vuong T., Meinhardt C., Triffin P., Denny R., Chen S., Nguyen H.T., Orf J.T., Young N.D.