---
identifier: Wm82.gnm6.S97D

provenance: "The files in this directory originated from http://phytozome.jgi.doe.gov. The Phytozome repository is considered the primary repository and authoritative; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and SoyBase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and SoyBase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately."

source: "https://phytozome-next.jgi.doe.gov/info/Gmax_Wm82_a6_v1"

synopsis: Glycine max accession Williams 82 (ISU01) genome assembly v6; renamed from Wm82 ISU-01 v2.1; JGI name Wm82.a6.v1

scientific_name: Glycine max

scientific_name_abbrev: glyma

taxid: 3847

genotype:
  - Wm82_ISU01

chromosome_prefix: Gm

description: "This release (Glycine max var. Wm82.a6.v1, renamed from Williams 82-ISU-01) is an inbred line developed by Robert Stupar (University of Minnesota) by inbreeding original W82 seed. The resulting genome is a haploid version of W82. The original W82 is from an agronomic line and contains variation between the two haplotypes. This genome can be used as an updated version of W82 -- the soybean reference genome, however, it is not an identical genotype to previous reference. Where possible, we have maintained continuity with the previous reference and the annotation is based on all available W82 transcript evidence. It is the most complete and highest quality soybean genome completed to date. Genome assembly consists of 47.07x of single haplotype CCS PACBIO coverage (17,049 bp average read size), assembled using HiFiAsm and HIC and the resulting sequence was polished using RACON. See full description at Phytozome/JGI repository (address above)."

original_file_creation_date: "2024-02-16"

local_file_creation_date: "2024-02-21"

dataset_release_date: "2024-02-21"

publication_title: "The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82"

contributors: Bob Stupar, Jeremy Schmutz

citation: "Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM. The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol. 2011 Feb;155(2):645-55. doi: 10.1104/pp.110.166736. Epub 2010 Nov 29. PMID: 21115807; PMCID: PMC3032456."

data_curators: Steven Cannon

public_access_level: public

license: Open, with usage agreement

keywords: soybean, Wm82, Williams 82, Wm82_ISU01, Wm82-ISU-01