--- identifier: Wm82.gnm4.4PTR provenance: "The files in this directory originated from http://phytozome.jgi.doe.gov. The Phytozome repository is considered the primary repository and authoritative; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo, PeanutBase, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo, PeanutBase, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory." source: "http://phytozome.jgi.doe.gov" synopsis: Glycine max accession Williams 82 genome assembly v4.0 scientific_name: Glycine max taxid: 3847 bioproject: PRJNA19861 scientific_name_abbrev: glyma genotype: - Williams 82 chromosome_prefix: Gm supercontig_prefix: scaffold description: "Genome assembly for Williams 82. The Williams 82 version 4 assembly (Wm82v4) builds on the widely-used assembly version 2, as well as an incremental version 3 that involved incorporation of BAC sequence to fill contig gaps in 2016. The Wm82v2 assembly was primarily Sanger-based, and new gap-filling in v3 and v4 utilized PacBio-based BAC assemblies targeted to gap regions. The Wm82v4 assembly closed 3,626 gaps and added 5,138,978 bp of sequence relative to Wm82v2, increasing the contig N50 from 233.1 kbp to 419.3 kbp." publication_doi: 10.1111/tpj.14500 publication_title: "Construction and comparison of three reference-quality genome assemblies for soybean" original_file_creation_date: "2018-04-23" local_file_creation_date: "2018-04-23" dataset_release_date: "2018-04-23" contributors: "Henry T. Nguyen, Babu Valliyodan, Steven Cannon, Hon Ming Lam, Dave Edwards, Philipp Bayer, Jacqueline Campbell, Ting-Fung Chan, Jeremy Schmutz, Qijian Song" data_curators: Jacqueline Campbell, Steven Cannon public_access_level: public license: Open keywords: soybean, Wm82, Williams 82