---
file_transformation: 
  - This pseudomolecule assembly derives from file Gmax_508_v4.0.fa and associated masked files, from JGI.

changes: 
  - 2018-04-23: Initial version
  - 2018-12-11: added cut-cite information from Bionano data, from Claire Chung & TingFung Chan
  - 2019-02-22: Added softmasked and hardmasked assemblies from PhytozomeV13. Updated README and MANIFESTs.
  - 2019-02-22: |
      For consistency with Data Store, prefixed chromosome IDs and scaffold names with glyma.Wm82.gnm4.
      perl -pe 's/^>(\S+)/>glyma.Wm82.gnm4.$1 $1/' Gmax_508_v4.0.fa > glyma.Wm82.gnm4.4PTR.genome_main.fna
      perl -pi -e 's/^>glyma.Wm82.gnm4.Gm\d\d_scaffold_/>glyma.Wm82.gnm4.scaffold_/' glyma.Wm82.gnm4.4PTR.genome_main.fna
      perl -pi -e 's/^>glyma.Wm82.gnm4.scaffold_/>glyma.Wm82.gnm4.scaffold_/' glyma.Wm82.gnm4.4PTR.genome_main.fna
      grep '>' glyma.Wm82.gnm4.4PTR.genome_main.fna | perl -pe 's/^>(\S+) /$1\t/'> glyma.Wm82.gnm4.4PTR.info_name_hash.txt
      bgzip glyma.Wm82.gnm4.4PTR.genome_main.fna 
      samtools faidx glyma.Wm82.gnm4.4PTR.genome_main.fna.gz 
  - 2024-04-11 sbc: update synopsis to include JGI numbering