---
file_transformation: 
add_prefixes_to_glycine_max/wm82.gnm1.fcty: 
  - perl -pi -e 's/>Gm/>glyma.Wm82.gnm2.Gm/; s/>scaff/>glyma.Wm82.gnm1.scaff/' glyma.Wm82.gnm1.FCtY.hardmasked.fna 
  - perl -pi -e 's/>Gm/>glyma.Wm82.gnm2.Gm/; s/>scaff/>glyma.Wm82.gnm1.scaff/' glyma.Wm82.gnm1.FCtY.hardmasked.fna 
  - perl -pi -e 's/>Gm/>glyma.Wm82.gnm2.Gm/; s/>scaff/>glyma.Wm82.gnm1.scaff/' glyma.Wm82.gnm1.FCtY.softmasked.fna

changes: 
  - 2018-02-28 prefixed assembly files with "glyma.Wm82.gnm2."
  - 2022-08-04 sc: re-compressed the assemblies with bgzip, then generate faidx files
  - 2024-04-11 sbc: update synopsis to include JGI numbering