---
identifier: JD17.gnm1.TW7L

provenance: "The files in this directory originated from https://doi.org/10.25387/g3.17065499, with the assembly corresponding to the one at GenBank under accession GCA_021733175.1. Those two repositories are considered the primary and authoritative for this data; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo and SoyBase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and SoyBase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately."

source: "https://doi.org/10.25387/g3.17065499"

synopsis: "Glycine max accession Jidou 17 (JD17), genome assembly 1"

scientific_name: Glycine max

scientific_name_abbrev: glyma

taxid: 3847

genotype:
  - JD17

chromosome_prefix: Chr

supercontig_prefix: PGA_scaffold

description: "Sequenced using PacBio RSII; assembled with CANU v. 1.4; FALCON v. 1.8.7 23 Mar 2017; HGAP v. SMRT Link v 5.0.1.9585; GPM v. Aug-2017"

genbank_accession: GCA_021733175.1

original_file_creation_date: "2022-02-03"

local_file_creation_date: "2023-08-29"

dataset_release_date: "2023-10-01"

publication_doi: 10.1093/g3journal/jkac017

publication_title: "Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics"

contributors: Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, Yang C, Chen N.

citation: "Yi X, Liu J, Chen S, Wu H, Liu M, Xu Q, Lei L, Lee S, Zhang B, Kudrna D, Fan W, Wing RA, Wang X, Zhang M, Zhang J, Yang C, Chen N. Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics. G3 (Bethesda). 2022 Apr 4;12(4):jkac017. doi: 10.1093/g3journal/jkac017. PMID: 35188189; PMCID: PMC8982393."

data_curators: Steven Cannon

public_access_level: public

license: Open

keywords: soybean, JD17, Jidou 17