## DOCUMENT 1 ## --- classical_locus: E9 gene_symbols: - GmFT2a gene_symbol_long: Flowering Time 2a gene_model_pub_name: Glyma.16g150700 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.16G150700 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Kong, Liu et al., 2010 doi: 10.1104/pp.110.160796 pmid: 20864544 - citation: Kong, Nan et al., 2014 doi: 10.2135/cropsci2014.03.0228 - citation: Takeshima, Hayashi et al., 2016 doi: 10.1093/jxb/erw283 pmid: 27422993 - citation: Zhao, Takeshima et al., 2016 doi: 10.1186/s12870-016-0704-9 pmid: 26786479 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 2 ## --- gene_symbols: - GmFT5a - FT5a - FTL4 gene_symbol_long: Flowering Time 5a gene_model_pub_name: Glyma.16G044100 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.16G044100 confidence: 5 curators: - Steven Cannon - Greg Murrell phenotype_synopsis: Control of flowering time and shoot determinacy traits: - entity_name: photoperiod-sensitive flowering time trait entity: TO:0000934 - entity_name: plant height entity: TO:0000207 - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Yue, Li et al., 2021 doi: 10.1111/jipb.13070 pmid: 33458938 - citation: Nan, Cao et al., 2014 doi: 10.1371/journal.pone.0097669 pmid: 24845624 - citation: Takeshima, Hayashi et al., 2016 doi: 10.1093/jxb/erw283 pmid: 27422993 - citation: Zhao, Takeshima et al., 2016 doi: 10.1186/s12870-016-0704-9 pmid: 26786479 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 - citation: Cai, Wang et al., 2020 doi: 10.1111/pbi.13199 pmid: 31240772 - citation: Jiang, Zhang et al., 2019 doi: 10.1186/s12864-019-5577-5 pmid: 30894121 - citation: Liu, Jiang et al., 2018 doi: 10.1111/nph.14884 pmid: 29120038 - citation: Cao, Takeshima et al., 2017 doi: 10.1093/jxb/erw394 pmid: 28338712 - citation: Kong, Liu et al., 2010 doi: 10.1104/pp.110.160796 pmid: 20864544 ## DOCUMENT 3 ## --- classical_locus: E1 gene_symbols: - E1 gene_symbol_long: Earliness 1 gene_model_pub_name: Glyma.06G207800 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.06G207800 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Xia, Zhai et al., 2012 doi: 10.3389/fpls.2021.632754 pmid: 33995435 - citation: Watanabe, Xia et al., 2011 doi: 10.1534/genetics.110.125062 pmid: 21406680 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 4 ## --- classical_locus: E2 gene_symbols: - GmGI gene_symbol_long: Earliness 2 gene_model_pub_name: Glyma.10G221500 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.10G221500 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Tsubokura, Watanabe et al., 2013 doi: 10.1093/aob/mct269 pmid: 24284817 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 - citation: Watanabe, Xia et al., 2011 doi: 10.1534/genetics.110.125062 pmid: 21406680 - citation: Xu, Yamagishi et al., 2015 doi: 10.1104/pp.15.00763 pmid: 26134161 ## DOCUMENT 5 ## --- gene_symbols: - Tof11 - PRR3a gene_symbol_long: Time of Flowering 11 gene_model_pub_name: SoyZH13_11G141200 gene_model_full_id: glyma.Zh13.gnm1.ann1.SoyZH13_11G141200 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Lu, Dong et al., 2020 doi: 10.1038/s41588-020-0604-7 pmid: 32231277 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 6 ## --- gene_symbols: - Tof12 - PRR3b gene_symbol_long: Time of Flowering 12 gene_model_pub_name: SoyZH13_12G067700 gene_model_full_id: glyma.Zh13.gnm1.ann1.SoyZH13_12G067700 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Lu, Dong et al., 2020 doi: 10.1038/s41588-020-0604-7 pmid: 32231277 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 7 ## --- gene_symbols: - GmSWN gene_symbol_long: Swinger gene_model_pub_name: Glyma.03G224300 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.03G224300 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Wu, Kang et al., 2019 doi: 10.3389/fpls.2019.01221 pmid: 31787988 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 8 ## --- gene_symbols: - GmELF5 gene_symbol_long: Early Flowering 5 gene_model_pub_name: Glyma.05G031100 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.05G031100 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Noh, Bizzell et al., 2004 doi: 10.1111/j.1365-313x.2004.02072.x pmid: 15125772 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 9 ## --- gene_symbols: - GmTEM1a gene_symbol_long: Tempranillo 1a gene_model_pub_name: Glyma.20G186200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.20G186200 confidence: 3 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Noh, Bizzell et al., 2004 doi: 10.1111/j.1365-313x.2004.02072.x pmid: 15125772 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 10 ## --- gene_symbols: - GmPHYE1 gene_symbol_long: Phytochrome E1 gene_model_pub_name: Glyma.09G088500 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.09G088500 confidence: 3 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 11 ## --- gene_symbols: - GmTOC1 gene_symbol_long: Timing of CAB Expression 1 gene_model_pub_name: Glyma.06G196200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.06G196200 confidence: 2 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 12 ## --- gene_symbols: - GmGA2OX5 gene_symbol_long: Gibberellin 2 Oxidase 5 gene_model_pub_name: Glyma.13G218200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.13G218200 confidence: 2 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 13 ## --- gene_symbols: - GmGA2OX6 gene_symbol_long: Gibberellin 2 Oxidase 6 gene_model_pub_name: Glyma.13G259400 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.13G259400 confidence: 2 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 14 ## --- gene_symbols: - GmMSI1 gene_symbol_long: Multicopy Suppressor of IRA 1 gene_model_pub_name: Glyma.05G131200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.05G131200 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 - entity_name: days to maturity entity: TO:0000469 references: - citation: Wu, Kang et al., 2019 doi: 10.3389/fpls.2019.01221 pmid: 31787988 - citation: Dietz, Chan et al., 2023 doi: 10.3389/fpls.2022.889066 pmid: 35574141 ## DOCUMENT 15 ## --- gene_symbols: - E1La gene_symbol_long: E1-like-a gene_model_pub_name: Glyma.04G156400 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.04G156400 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Xu, Yamagishi et al., 2015 doi: 10.1104/pp.15.00763 pmid: 26134161 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 16 ## --- gene_symbols: - E1Lb gene_symbol_long: E1-like-b gene_model_pub_name: Glyma.04G143300 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.04G143300 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Watanabe, Xia et al., 2011 doi: 10.1534/genetics.110.125062 pmid: 21406680 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 17 ## --- classical_locus: E3 gene_symbols: - GmphyA3 gene_symbol_long: Earliness 3 gene_model_pub_name: Glyma.19G224200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.19G224200 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Watanabe, Hideshima et al., 2009 doi: 10.1534/genetics.108.098772 pmid: 19474204 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 18 ## --- classical_locus: E4 gene_symbols: - GmphyA2 gene_symbol_long: Earliness 4 gene_model_pub_name: Glyma.20G090000 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.20G090000 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Liu, Jiang et al., 2008a doi: 10.1111/nph.14884 pmid: 29120038 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 19 ## --- classical_locus: E10 gene_symbols: - GmFT4 gene_symbol_long: Earliness 10 gene_model_pub_name: Glyma.08G363100 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.08G363100 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Zhai et al., 2014 doi: 10.1371/journal.pone.0089030 pmid: 24586488 - citation: Samanfar et al., 2017 doi: 10.1007/s00122-016-2819-7 pmid: 27832313 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 20 ## --- classical_locus: J gene_symbols: - GmELF3 gene_symbol_long: Early Flowering 3 gene_model_pub_name: Glyma.04G050200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.04G050200 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Lu, Zhao et al., 2017 doi: 10.1038/ng.3819 pmid: 28319089 - citation: Yue et al., 2017 doi: 10.1016/j.molp.2016.12.004 pmid: 27979775 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 21 ## --- gene_symbols: - GmFT5a gene_symbol_long: Flowering Time 5a gene_model_pub_name: Gyma.16G044100 gene_model_full_id: glyma.Wm82.gnm2.ann1.Gyma.16G044100 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Kong, Liu et al., 2010 doi: 10.1104/pp.110.160796 pmid: 20864544 - citation: Fan, Hu et al., 2014 doi: 10.1186/1471-2229-14-9 pmid: 24397545 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 22 ## --- gene_symbols: - GmFT1a gene_symbol_long: Flowering Timne 1a gene_model_pub_name: Glyma.18G298900 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.18G298900 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Guo, Xu et al., 2015 doi: 10.1371/journal.pone.0136601 pmid: 26371882 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 23 ## --- gene_symbols: - GmFT1b gene_symbol_long: Flowering Time 1b gene_model_pub_name: Glyma.18G299000 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.18G299000 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Guo, Xu et al., 2015 doi: 10.1371/journal.pone.0136601 pmid: 26371882 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 24 ## --- gene_symbols: - GmFT2b gene_symbol_long: Flowering Time 2b gene_model_pub_name: Glyma.16G151000 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.16G151000 confidence: 5 curators: - Steven Cannon - Greg Murrell phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Fan, Hu et al., 2014 doi: 10.1186/1471-2229-14-9 pmid: 24397545 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 - citation: Chen, Cai et al., 2020 doi: 10.1111/pce.13695 pmid: 31981430 ## DOCUMENT 25 ## --- gene_symbols: - GmFT3a gene_symbol_long: Flowering Time 3a gene_model_pub_name: Glyma.16G044200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.16G044200 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Fan, Hu et al., 2014 doi: 10.1186/1471-2229-14-9 pmid: 24397545 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 26 ## --- gene_symbols: - GmFT3b gene_symbol_long: Flowering Time 3b gene_model_pub_name: Glyma.19G108100 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.19G108100 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Fan, Hu et al., 2014 doi: 10.1186/1471-2229-14-9 pmid: 24397545 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 27 ## --- gene_symbols: - GmFT5b gene_symbol_long: Flowering Time 5b gene_model_pub_name: Glyma.19G108200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.19G108200 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Fan, Hu et al., 2014 doi: 10.1186/1471-2229-14-9 pmid: 24397545 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 28 ## --- gene_symbols: - GmFT6 gene_symbol_long: Flowering Time 6 gene_model_pub_name: Glyma.08G363200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.08G363200 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: negatively regulates relation: RO:0002212 - entity_name: days to maturity entity: TO:0000469 relation_name: negatively regulates relation: RO:0002212 references: - citation: Wang, Zhou et al., 2015 doi: 10.1105/tpc.114.135103 pmid: 25663621 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 29 ## --- gene_symbols: - LHY1a gene_symbol_long: Leafy 1a gene_model_pub_name: Glyma.16G017400 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.16G017400 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Lu, Zhao et al., 2017 doi: 10.1038/ng.3819 pmid: 28319089 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 30 ## --- gene_symbols: - LHY1b gene_symbol_long: Leafy 1b gene_model_pub_name: Glyma.07G048500 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.07G048500 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Lu, Zhao et al., 2017 doi: 10.1038/ng.3819 pmid: 28319089 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 31 ## --- gene_symbols: - LHY2a - GmLHY2a - LCL3 - MYB156 gene_symbol_long: Leafy 2a gene_model_pub_name: Glyma.19G260900 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.19G260900 confidence: 5 curators: - Steven Cannon - Greg Murrell phenotype_synopsis: Photoperiodic flowering time regulation comments: Encodes a MYB transciption factor that affects plant height through mediating the GA pathway in soybean traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Lu, Zhao et al., 2017 doi: 10.1038/ng.3819 pmid: 28319089 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 - citation: Chen, Cai et al., 2020 doi: 10.1111/pce.13695 pmid: 31981430 ## DOCUMENT 32 ## --- gene_symbols: - LHY2b gene_symbol_long: Leafy 2b gene_model_pub_name: Glyma.03G261800 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.03G261800 confidence: 5 curators: - Steven Cannon phenotype_synopsis: Photoperiodic flowering time regulation traits: - entity_name: flowering time entity: TO:0002616 relation_name: positively regulates relation: RO:0002213 - entity_name: days to maturity entity: TO:0000469 relation_name: positively regulates relation: RO:0002213 references: - citation: Lu, Zhao et al., 2017 doi: 10.1038/ng.3819 pmid: 28319089 - citation: Lin, Liu et al., 2021 doi: 10.1111/jipb.13021 pmid: 33090664 ## DOCUMENT 33 ## --- classical_locus: gene_symbols: - GmDT2 gene_symbol_long: Determinacy 2 gene_model_pub_name: SoyZH13_18G242900 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.18G273600 confidence: 5 curators: - Brandon Jordan phenotype_synopsis: In the presence of Dt1, Dt2 impacts determinacy, maturity, and branch number. comments: - knockout of SoyZH13_18g242900 produces plants with increased branch number and delayed flowering and maturity relative to wildtype. traits: - entity_name: shoot branching entity: TO:0002639 relation_name: increased amount relation: PATO:0000470 references: - citation: Liang, Chen et al., 2022 doi: 10.1038/s41467-022-34153-4 pmid: 36307423 - citation: Ping, Liu et al., 2014 doi: 10.1105/tpc.114.126938 pmid: 25005919 ## DOCUMENT 34 ## --- classical_locus: gene_symbols: - GmDT1 - TFL - TFL1b - TFL1.1 - GmTFL1b gene_symbol_long: Determinacy 1 gene_model_pub_name: Glyma.19g194300 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.19G194300 confidence: 5 curators: - Brandon Jordan - Greg Murrell comments: - Affects photoperiodic flowering time and determinacy phenotype_synopsis: Modification of flowering time and determinacy traits: - entity_name: photoperiod-sensitive flowering time trait entity: TO:0000934 - entity_name: plant height entity: TO:0000207 - entity_name: flowering time entity: TO:0002616 - entity_name: meristem identity entity: TO:0006017 relation_name: terminal relation: PATO:0002476 references: - citation: Liu, Watanabe et al., 2010 doi: doi.org/10.1104/pp.109.150607 pmid: 20219831 - citation: Yue, Li et al., 2021 doi: 10.1111/jipb.13070 pmid: 33458938 - citation: Tian, Wang et al., 2010 doi: 10.1073/pnas.1000088107 pmid: 20421496 - citation: Langewisch, Zhang, 2014 doi: 10.1371/journal.pone.0094150 pmid: 24727730 ## DOCUMENT 35 ## --- gene_symbols: - GmPLDγ gene_symbol_long: Phospholipase D gene_model_pub_name: Glyma.01g42420 gene_model_full_id: Glyma.Wm82.gmn1.Glyma01g42420 confidence: 5 curators: - Greg Murrell phenotype_summary: Overexpression of GmPLDγ from soybean results in higher seed oil content and fatty-acid remodeling in Arabidopsis. traits: - entity_name: seed oil content entity: CO_336:0000048 relation_name: positively regulates relation: RO:0002213 - entity_name: fat and essential oil composition related trait entity: TO:0000491 - entity_name: seed weight entity: TO:0000181 relation_name: positively regulates relation: RO:0002213 - entity_name: triglyceride metabolic process entity: GO:0006641 relation_name: positively regulates relation: RO:0002213 references: - citation: Bai, Jing et al., 2021 doi: 10.1016/j.plantsci.2019.110298 pmid: 31779909 ## DOCUMENT 36 ## --- gene_symbols: - GmSYP24 - GmLEA2-96 - SYP24 gene_symbol_long: Putative Syntaxin Gene gene_model_pub_name: Glyma.19G198600 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.19G198600 confidence: 5 curators: - Greg Murrell phenotype_synopsis: Dehydration response traits: - entity_name: drought tolerance entity: TO:0000276 relation_name: positively regulates relation: RO:0002213 - entity_name: abscisic acid-activated signaling pathway entity: GO:0009738 - entity_name: seed germination entity: GO:0009845 references: - citation: Chen, Fang et al., 2019 doi: 10.1038/s41598-019-42332-5 pmid: 30979945 ## DOCUMENT 37 ## --- gene_symbols: - KASI gene_symbol_long: beta-ketoacyl-ACP synthetase I gene_model_pub_name: Glyma.08G084300 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.08G084300 confidence: 4 curators: - Greg Murrell phenotype_synopsis: Altered seed sucrose & oil content due to due to disruption of a core fatty acid synthase. traits: - entity_name: sucrose content entity: TO:0000328 relation_name: positively regulates relation: RO:0002213 - entity_name: fat & essential oil content entity: TO:0000604 relation_name: negatively regulates relation: RO:0002212 references: - citation: Dobbels, Michno et al., 2017 doi: 10.1534/g3.116.038596 pmid: 28235823 ## DOCUMENT 38 ## --- gene_symbols: - GmLEC2a - GmLEC2 - LEC2 gene_symbol_long: Leafy Cotyledon 2 gene_model_pub_name: Glyma.20G035700 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.20G035700 confidence: 4 curators: - Greg Murrell phenotype_synopsis: Regulation of genes involved in biosynthesis and catabolism of seed storage and development. traits: - entity_name: seed growth and development trait entity: TO:0000653 - entity_name: triglyceride catabolic process entity: GO:0019433 relation_name: negatively regulates relation: RO:0002212 - entity_name: carbohydrate biosynthetic process entity: GO:0016051 relation_name: negatively regulates relation: RO:0002212 - entity_name: regulation of gene expression entity: GO:0010468 references: - citation: Manan, Ahmad et al., 2017 doi: 10.3389/fpls.2017.01604 pmid: 28979275 ## DOCUMENT 39 ## --- gene_symbols: - GmCHX1 gene_symbol_long: cation/H(+) antiporter 1 gene_model_pub_name: Glyma.03G171600 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.03G171600 confidence: 4 curators: - Greg Murrell phenotype_synopsis: Impacts salt tolerance traits: - entity_name: salt tolerance entity: TO:0006001 relation_name: positively regulates relation: RO:0002213 references: - citation: Qi, Li et al., 2014 doi: 10.1038/ncomms5340 pmid: 25004933 ## DOCUMENT 40 ## --- gene_symbols: - Fg2 - GmF3G6R-b - GmF3G6_Rt-b gene_symbol_long: flavonol glycoside 2 mRNA for flavonol 3-O-glucoside (1->6) rhamnosyltransferase gene_model_pub_name: Glyma.10G194000 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.10G194000 confidence: 4 curators: - Greg Murrell phenotype_synopsis: Encodes a flavonol 3-O-glucoside (1 -> 6) rhamnosyltransferase. traits: - entity_name: glycoside biosynthetic process entity: GO:0016138 references: - citation: RojasRodas, Rodriguez et al., 2013 doi: 10.1007/s11103-013-0133-1 pmid: 24072327 ## DOCUMENT 41 ## --- gene_symbols: - Rj2 gene_symbol_long: Restriction of nodulation 2 gene_model_pub_name: Glyma16g33780 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma16g33780 confidence: 4 curators: - Greg Murrell phenotype_synopsis: Some alleles of Rj2 restrict nodulation to specific rhizobial strains. traits: - entity_name: root nodule entity: PO:0003023 references: - citation: Sugawara, Umehara et al., 2019 doi: 10.1371/journal.pone.0222469 pmid: 31518373 ## DOCUMENT 42 ## --- gene_symbols: - GmTMT2a gene_symbol_long: glyma.Wm82.gnm1.ann1.Glyma12g01690 gene_model_pub_name: Glyma12g01690 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma12g01690 confidence: 5 curators: - Greg Murrell phenotype_synopsis: Catalyzes the conversion of γ-tocopherol to α-tocopherol. traits: - entity_name: vitamin E biosynthetic process entity: GO:0010189 relation_name: positively regulates relation: RO:0002213 references: - citation: Zhang, Luo et al., 2013 doi: 10.1007/s11248-013-9713-8 pmid: 23645501 - citation: Fang, Feng et al., 2017 doi: 10.1016/j.yrtph.2017.01.004 pmid: 28132846 - citation: Zhang, Luo et al., 2020 doi: 10.1007/s11248-019-00180-z pmid: 31673914 ## DOCUMENT 43 ## --- gene_symbols: - ChlI1a gene_symbol_long: Mg-chelatase subunit Chl1 gene_model_pub_name: Glyma.13G232500 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.13G232500 confidence: 4 comments: - The MinnGold and T219H phenotypes cosegregate with ChlI1a. Transformation of WT ChlI1a into mutant soy reinstated normal phenotype. phenotype_synopsis: defective Mg-chetelase is responsible for chlorophyll deficient MinnGold (y11-2) and T219H (y11) phenotypes traits: - entity_name: magnesium chelatase activity entity: GO:0016851 - entity_name: leaf chlorophyll content entity: TO:0012002 references: - citation: Campbell, Mani et al., 2014 doi: 10.1534/g3.114.015255 pmid: 25452420 ## DOCUMENT 44 ## --- gene_symbols: - ChlI1b gene_symbol_long: null gene_model_pub_name: Glyma.15g08680 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.15G086800 confidence: 4 comments: - The CD-5 phenotype cosegregates with ChlI1b. phenotype_synopsis: defective Mg-chetelase is responsible for chlorophyll deficient CD-5 phenotype traits: - entity_name: magnesium chelatase activity entity: GO:0016851 - entity_name: leaf chlorophyll content entity: TO:0012002 references: - citation: Campbell, Mani et al., 2014 doi: 10.1534/g3.114.015255 pmid: 25452420 ## DOCUMENT 45 ## --- gene_symbols: - GmCAMTA12 gene_symbol_long: Glycine max calmodulin binding transcription activator gene_model_pub_name: Glyma.17G031900 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.17G031900 confidence: 4 curators: - Marlene Dorneich-Hayes comments: - Overexpression of GmCAMTA12 increases drought tolerance in Glycine max and Arabidopsis. phenotype_synopsis: GmCAMTA12 affects the expression of many genes involved in stress tolerance. traits: - entity_name: abiotic stress trait entity: TO:0000168 - entity_name: drought tolerance entity: TO:0000276 - entity_name: calmodulin binding entity: GO:0005516 references: - citation: Noman, Jameel et al., 2019 doi: 10.3390/ijms20194849 pmid: null - citation: Wang, Zeng et al., 2015 doi: 10.1007/s11104-014-2267-6 pmid: null ## DOCUMENT 46 ## --- gene_symbols: - GmFLS2a gene_symbol_long: Glycine max flagellin sensing 2 gene_model_pub_name: glyma.08g083300 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.08G083300 confidence: 4 curators: - Marlene Dorneich-Hayes comments: - GmFLS2a and GmFLS2b are likely redundant. They are not distinguishable by the VIGS knockout approach. When both of these genes are silenced, soy plants became much more suceptible to bacterial pathogens (Pseudomonas syringae pv. glycinea), but resistance to viral pathogens (Soybean mosaic virus) is not affected. phenotype_synopsis: GmFLS2a and GmFLS2b kinases start a phosphorylation cascade that activates GmMPK3 and GmMPK6, which are involved in the plant's response to bacterial infection. traits: - entity_name: bacterial disease resistance entity: TO:0000315 - entity_name: kinase activity entity: GO:0016301 references: - citation: Tian, Liu et al., 2019 doi: 10.1016/j.plantsci.2019.110386 pmid: 32005391 ## DOCUMENT 47 ## --- gene_symbols: - GmFLS2b gene_symbol_long: Glycine max flagellin sensing 2 gene_model_pub_name: glyma.05g128200 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.05G128200 confidence: 4 curators: - Marlene Dorneich-Hayes comments: - GmFLS2a and GmFLS2b are likely redundant. They are not distinguishable by the VIGS knockout approach. When both are silenced, soy plants became much more suceptible to bacterial pathogens (Pseudomonas syringae pv. glycinea), but resistance to viral pathogens (Soybean mosaic virus) is not affected. phenotype_synopsis: GmFLS2a and GmFLS2b kinases start a phosphorylation cascade that activates GmMPK3 and GmMPK6, which are involved in the plant's response to bacterial infection. traits: - entity_name: bacterial disease resistance entity: TO:0000315 - entity_name: kinase activity entity: GO:0016301 references: - citation: Tian, Liu et al., 2019 doi: 10.1016/j.plantsci.2019.110386 pmid: 32005391 ## DOCUMENT 48 ## --- gene_symbols: - GmEDS1a gene_symbol_long: Glycine max enhanced disease susceptibility 1a gene_model_pub_name: Glyma04g34800 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma04g34800 confidence: 4 curators: - Marlene Dorneich-Hayes comments: - Silencing of GmEDS1a/b and GmPAD4 stopped accumulation of salicylic acid and increased the plant's suceptibility to Pseudomonas syringae pv glycinea and soybean mosaic virus infection. The phenotype is only altered if all three genes are silenced. phenotype_synopsis: responsible for basal and pathogen-inducible accumulation of salicylic acid, which helps the plant resist bacterial, oomycete, and viral infection. Gene activity is induced by infection. traits: - entity_name: defense response to bacterium entity: GO:0042742 - enitity_name: defense response to virus entity: GO:0051607 references: - citation: Wang, Shine et al., 2014 doi: 10.1104/pp.114.242495 pmid: 24872380 - citation: Weirmer, Feys et al., 2005 doi: 10.1016/j.pbi.2005.05.010 pmid: 15939664 ## DOCUMENT 49 ## --- gene_symbols: - GmEDS1b gene_symbol_long: Glycine max enhanced disease suceptibility 1b gene_model_pub_name: Glyma06g19920 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma06g19920 confidence: 4 curators: - Marlene Dorneich-Hayes comments: - Silencing of GmEDS1a/b and GmPAD4 stopped accumulation of salicylic acid and increased the plant's suceptibility to Pseudomonas syringae pv glycinea and soybean mosaic virus infection. The phenotype is only altered if all three genes are silenced. phenotype_synopsis: responsible for basal and pathogen-inducible accumulation of salicylic acid, which helps the plant resist bacterial, oomycete, and viral infection. Gene activity is induced by infection. traits: - entity_name: defense response to bacterium entity: GO:0042742 - enitity_name: defense response to virus entity: GO:0051607 references: - citation: Wang, Shine et al., 2014 doi: 10.1104/pp.114.242495 pmid: 24872380 - citation: Weirmer, Feys et al., 2005 doi: 10.1016/j.pbi.2005.05.010 pmid: 15939664 ## DOCUMENT 50 ## --- gene_symbols: - GmPAD4 gene_symbol_long: Glycine max phytoalexin deficient 4 gene_model_pub_name: Glyma08g00420 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma08g00420 confidence: 4 curators: - Marlene Dorneich-Hayes comments: - Silencing of GmEDS1a/b and GmPAD4 stopped accumulation of salicylic acid and increased the plant's suceptibility to Pseudomonas syringae pv glycinea and soybean mosaic virus infection. The phenotype is only altered if all three genes are silenced. phenotype_synopsis: responsible for basal and pathogen-inducible accumulation of salicylic acid, which helps the plant resist bacterial, oomycete, and viral infection. Gene activity is induced by infection. traits: - entity_name: defense response to bacterium entity: GO:0042742 - enitity_name: defense response to virus entity: GO:0051607 references: - citation: Wang, Shine et al., 2014 doi: 10.1104/pp.114.242495 pmid: 24872380 - citation: Weirmer, Feys et al., 2005 doi: 10.1016/j.pbi.2005.05.010 pmid: 15939664 ## DOCUMENT 51 ## --- gene_symbols: - GmIDD gene_symbol_long: soybean indeterminate domain transcription factor gene_model_pub_name: Glyma.14G095900 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glyma.14G095900 confidence: 5 curators: - Marlene Dorneich-Hayes comments: - Comparisons between plants exposed to different day lengths indicated that GmIDD was induced by short days. Overexpression of GmIDD induces early flowering in WT Arabidopsis plants and restores normal flowering time to late-flowering Arabidopsis mutants. Genes acted on by the GmIDD-endcoded transcription factor identified by ChIP-Seq. phenotype_synopsis: GmIDD is induced by short days and promotes flowering in soy, maize, rice, and Arabidopsis. traits: - entity_name: photoperiod sensitive flowering time entity: TO:0000934 - entity_name: flowering time entity: TO:0002616 - entity_name: short day length exposure entity: PECO:0007200 references: - citation: Yang, Zhang et al., 2021 doi: 10.3389/fpls.2021.629069 pmid: 33841461 ## DOCUMENT 52 ## --- gene_symbols: - GmAKT2 gene_symbol_long: soybean potassium transporter gene 2 gene_model_pub_name: Glym08g20030 gene_model_full_id: glyma.Wm82.gnm2.ann1.Glym08g20030 confidence: 5 curators: - Marlene Dorneich-Hayes comments: - Overexpression of GmAKT2 in transgenic SMV-susceptible soy plants increases resistance to SMV relative to WT phenotype_synopsis: GmAKT2 increases a soy plant's resistance to SMV by affecting distribution of potassium ions in the leaves. traits: - entity_name: soybean mosaic virus entity: NCBITaxon:12222 - entity_name: viral disease resistance entity: TO:0000148 - entity_name: mineral and ion transportation entity: TO:0020096 - entity_name: postassium ion concentration entity: TO:0000513 references: - citation: Zhou, He et al., 2014 doi: 10.1186/1471-2229-14-154 pmid: 24893844 ## DOCUMENT 53 ## --- classical_locus: Gp11 gene_symbols: - GmPRR3A gene_symbol_long: null gene_model_pub_name: Glyma11g15580 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma11g15580.3 confidence: 5 curators: - William Hardison comments: - Glyma11g15580 pseudo-response regulator 3 - Gp11 and Gp12 regulate the expression of GmFT2a and GmFT5a phenotype_synopsis: Shorter growth period traits: - entity_name: days to maturity entity: TO:0000469 references: - citation: Li, Liu et al., 2019 doi: 10.1093/pcp/pcy215 pmid: 30418611 ## DOCUMENT 54 ## --- classical_locus: Gp12 gene_symbols: - GmPRR3B gene_symbol_long: null gene_model_pub_name: Glyma12g07861 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma12g07861.3 confidence: 5 curators: - William Hardison comments: - Gp11 and Gp12 regulate the expression of GmFT2a and GmFT5a - Glyma12g07861 pseudo-response regulator 7‡ phenotype_synopsis: Shorter growth period traits: - entity_name: days to maturity entity: TO:0000469 references: - citation: Li, Liu et al., 2019 doi: 10.1093/pcp/pcy215 pmid: 30418611 ## DOCUMENT 55 ## --- classical_locus: null gene_symbols: - GA2ox8A gene_symbol_long: gibberellin 2-oxidase 8A/B gene_model_pub_name: Glyma.13G287600 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.13G287600.1 confidence: 5 curators: - William Hardison comments: - ncbi says the locus for gibberellin 2-beta-dioxygenase 8 [Glycine max] -> LOCUS NP_001242439 - Cannot find plant trait ontology for trailing growth and shoot length -> "shoot height (related)" is for plant height - glyma.Wm82.gnm2.ann1.Glyma.13G287600.1 also works phenotype_synopsis: Negatively correlated with shoot length and trailing growth traits: - entity_name: plant height entity: TO:0000207 references: - citation: Wang, Li et al., 2021 doi: 10.1111/tpj.15414 pmid: 34245624 ## DOCUMENT 56 ## --- classical_locus: null gene_symbols: - GA2ox8B gene_symbol_long: gibberellin 2-oxidase 8A/B gene_model_pub_name: Glyma.13G288000 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.13G288000.1 confidence: 5 curators: - William Hardison comments: - Cannot find plant trait ontology for trailing growth and shoot length -> "shoot height (related)" is for plant height - glyma.Wm82.gnm2.ann1.Glyma.13G288000.1 also works phenotype_synopsis: Negatively correlated with shoot length and trailing growth traits: - entity_name: plant height entity: TO:0000207 references: - citation: Wang, Li et al., 2021 doi: 10.1111/tpj.15414 pmid: 34245624 ## DOCUMENT 57 ## --- classical_locus: null gene_symbols: - GmVSPβ gene_symbol_long: null gene_model_pub_name: Glyma08g21410.1 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma08g21410.1 confidence: 5 curators: - William Hardison comments: - increased resistance to CCW (Common cutworm) phenotype_synopsis: increased resistance to insect infestations traits: - entity_name: insect damage resistance entity: TO:0000261 references: - citation: Wang, Wang et al., 2015 doi: null pmid: null ## DOCUMENT 58 ## --- classical_locus: null gene_symbols: - GmN:IFR gene_symbol_long: null gene_model_pub_name: Glyma01g37810.1 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma01g37810.1 confidence: 5 curators: - William Hardison comments: - increased resistance to CCW (Common cutworm) phenotype_synopsis: increased resistance to insect infestations traits: - entity_name: insect damage resistance entity: TO:0000261 references: - citation: Wang, Wang et al., 2015 doi: null pmid: null ## DOCUMENT 59 ## --- classical_locus: null gene_symbols: - GmGBP1 gene_symbol_long: Glycine max GAMYB-binding protein gene gene_model_pub_name: DQ112540 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.01G008600.1 confidence: 5 curators: - William Hardison comments: - haplotype analysis, association analysis, phenotypic analysis, statistics analysis - on ncbi -> GLYMA_01G008600v4, LOC732608, glyma.Wm82.gnm2.ann1.Glyma.01G008600.1 - Zhang, Zhao et al., 2013 [doi 10.1186/1471-2229-13-21] identifies GmGBP1 as GenBank DQ112540 phenotype_synopsis: increased flowering on short days traits: - entity_name: photoperiod-sensitive flowering time trait entity: TO:0002616 - entity_name: days to maturity entity: TO:0000933 references: - citation: Zhao, Li et al., 2018 doi: 10.1111/tpj.14025 pmid: 30004144 - citation: Zhang, Zhao et al., 2013 doi: 10.1186/1471-2229-13-21 pmid: 23388059 - citation: Zhao, Wang et al., 2013 doi: 10.1007/s11103-013-0062-z pmid: 23636865 ## DOCUMENT 60 ## --- gene_symbols: - KASII-A gene_symbol_long: beta-ketoacyl-ACP synthase II gene_model_pub_name: Glyma17g05200 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma17g05200 confidence: 3 curators: - Wei Huang comments: - Mutations in the soybean 3-ketoacyl-ACP synthase gene are correlated with high levels of seed palmitic acid phenotype_synopsis: Palmitic acid levels were significantly higher in the mutants than in the Williams-82 wild type control traits: - entity_name: beta-ketoacyl-acyl-carrier-protein synthase II activity entity: GO:0033817 references: - citation: Head, Katie et al., 2012 doi: 10.1007/s11032-012-9707-x pmid: null ## DOCUMENT 61 ## --- gene_symbols: - KASII-B gene_symbol_long: plastid 3-keto-acyl-ACP synthase II-B gene_model_pub_name: Glyma13g17290 gene_model_full_id: glyma.Wm82.gnm1.ann1.Glyma13g17290 confidence: 3 curators: - Wei Huang phenotype_synopsis: Palmitic acid levels were significantly higher in the mutants than in the Williams-82 wild type control traits: - entity_name: beta-ketoacyl-acyl-carrier-protein synthase II activity entity: GO:0033817 references: - citation: Head, Katie et al., 2012 doi: 10.1007/s11032-012-9707-x pmid: null ## DOCUMENT 62 ## --- gene_symbols: - MYB176 gene_symbol_long: GmMYB176 gene_model_pub_name: Glyma.05g032200 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.05g032200 confidence: 4 curators: - Wei Huang comments: - A combinatorial action of GmMYB176 and GmbZIP5 controls isoflavonoid biosynthesis in soybean (Glycine max) phenotype_synopsis: GmMYB176 regulates multiple genes in the isoflavonoid biosynthetic pathway, thereby affecting their levels in soybean roots. traits: - entity_name: isoflavonoid biosynthetic process entity: GO:0009717 - entity_name: isoflavonoid phytoalexin metabolic process entity: GO:0046289 references: - citation: Vadivel, Anguraj AK et al., 2021 doi: 10.1038/s42003-021-01889-6 pmid: 33742087 - citation: Yi, Jinxin et al., 2010 doi: 10.1111/j.1365-313x.2010.04214.x pmid: 20345602 ## DOCUMENT 63 ## --- gene_symbols: - bzip5 gene_symbol_long: GmbZIP5 gene_model_pub_name: Glyma.15g014800 gene_model_full_id: glyma.Wm82.gnm4.ann1.Glyma.15g014800 confidence: 4 curators: - Wei Huang phenotype_synopsis: RNAi silencing of GmbZIP5 reduced the isoflavonoid level in soybean hairy roots. traits: - entity_name: isoflavonoid biosynthetic process entity: GO:0009717 - entity_name: isoflavonoid phytoalexin metabolic process entity: GO:0046289 references: - citation: Vadivel, Anguraj AK et al., 2021 doi: 10.1038/s42003-021-01889-6 pmid: 33742087