##### PUB RECORD #####
## 10.1007/s00122-016-2819-7 27832313 null Samanfar et al., 2017 "Samanfar B, Molnar SJ, Charette M, Schoenrock A, Dehne F, Golshani A, Belzile F, Cober ER. Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean. Theor Appl Genet. 2017 Feb;130(2):377-390. doi: 10.1007/s00122-016-2819-7. Epub 2016 Nov 10. PMID: 27832313." ##
PMID- 27832313
OWN - NLM
STAT- MEDLINE
DCOM- 20170209
LR - 20220310
IS - 1432-2242 (Electronic)
IS - 0040-5752 (Linking)
VI - 130
IP - 2
DP - 2017 Feb
TI - Mapping and identification of a potential candidate gene for a novel maturity
locus, E10, in soybean.
PG - 377-390
LID - 10.1007/s00122-016-2819-7 [doi]
AB - E10 is a new maturity locus in soybean and FT4 is the predicted/potential
functional gene underlying the locus. Flowering and maturity time traits play
crucial roles in economic soybean production. Early maturity is critical for
north and west expansion of soybean in Canada. To date, 11 genes/loci have been
identified which control time to flowering and maturity; however, the molecular
bases of almost half of them are not yet clear. We have identified a new maturity
locus called "E10" located at the end of chromosome Gm08. The gene symbol E10e10
has been approved by the Soybean Genetics Committee. The e10e10 genotype results
in 5-10 days earlier maturity than E10E10. A set of presumed E10E10 and e10e10
genotypes was used to identify contrasting SSR and SNP haplotypes. These
haplotypes, and their association with maturity, were maintained through five
backcross generations. A functional genomics approach using a predicted
protein-protein interaction (PPI) approach (Protein-protein Interaction
Prediction Engine, PIPE) was used to investigate approximately 75 genes located
in the genomic region that SSR and SNP analyses identified as the location of the
E10 locus. The PPI analysis identified FT4 as the most likely candidate gene
underlying the E10 locus. Sequence analysis of the two FT4 alleles identified
three SNPs, in the 5'UTR, 3'UTR and fourth exon in the coding region, which
result in differential mRNA structures. Allele-specific markers were developed
for this locus and are available for soybean breeders to efficiently develop
earlier maturing cultivars using molecular marker assisted breeding.
FAU - Samanfar, Bahram
AU - Samanfar B
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada.
FAU - Molnar, Stephen J
AU - Molnar SJ
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada.
FAU - Charette, Martin
AU - Charette M
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada.
FAU - Schoenrock, Andrew
AU - Schoenrock A
AD - School of Computer Science, Carleton University, Ottawa, ON, K1S 5B6, Canada.
FAU - Dehne, Frank
AU - Dehne F
AD - School of Computer Science, Carleton University, Ottawa, ON, K1S 5B6, Canada.
FAU - Golshani, Ashkan
AU - Golshani A
AD - Department of Biology and Ottawa Institute of Systems Biology, Carleton
University, Ottawa, ON, K1S 5B6, Canada.
FAU - Belzile, Francois
AU - Belzile F
AD - Departement de Phytologie and Institut de Biologie Integrative et des Systemes,
Universite Laval, Quebec City, QC, G1V 0A6, Canada.
FAU - Cober, Elroy R
AU - Cober ER
AUID- ORCID: 0000-0002-4673-1808
AD - Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa,
ON, K1A 0C6, Canada. elroy.cober@agr.gc.ca.
LA - eng
PT - Journal Article
DEP - 20161110
PL - Germany
TA - Theor Appl Genet
JT - TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
JID - 0145600
RN - 0 (DNA, Plant)
RN - 0 (Genetic Markers)
RN - 0 (RNA, Messenger)
SB - IM
MH - *Chromosome Mapping
MH - Computational Biology
MH - DNA, Plant/genetics
MH - *Genetic Loci
MH - Genetic Markers
MH - Genotype
MH - Haplotypes
MH - Microsatellite Repeats
MH - Nucleic Acid Conformation
MH - Plant Breeding
MH - Polymorphism, Single Nucleotide
MH - RNA, Messenger/chemistry
MH - Soybeans/*genetics/physiology
EDAT- 2016/11/11 06:00
MHDA- 2017/02/10 06:00
CRDT- 2016/11/11 06:00
PHST- 2016/07/18 00:00 [received]
PHST- 2016/10/27 00:00 [accepted]
PHST- 2016/11/11 06:00 [pubmed]
PHST- 2017/02/10 06:00 [medline]
PHST- 2016/11/11 06:00 [entrez]
AID - 10.1007/s00122-016-2819-7 [pii]
AID - 10.1007/s00122-016-2819-7 [doi]
PST - ppublish
SO - Theor Appl Genet. 2017 Feb;130(2):377-390. doi: 10.1007/s00122-016-2819-7. Epub
2016 Nov 10.
##### PUB RECORD #####
## 10.1016/j.molp.2016.12.004 27979775 null Yue et al., 2017 "Yue Y, Liu N, Jiang B, Li M, Wang H, Jiang Z, Pan H, Xia Q, Ma Q, Han T, Nian H. A Single Nucleotide Deletion in J Encoding GmELF3 Confers Long Juvenility and Is Associated with Adaption of Tropic Soybean. Mol Plant. 2017 Apr 3;10(4):656-658. doi: 10.1016/j.molp.2016.12.004. Epub 2016 Dec 12. PMID: 27979775." ##
PMID- 27979775
OWN - NLM
STAT- MEDLINE
DCOM- 20181113
LR - 20181113
IS - 1752-9867 (Electronic)
IS - 1674-2052 (Linking)
VI - 10
IP - 4
DP - 2017 Apr 3
TI - A Single Nucleotide Deletion in J Encoding GmELF3 Confers Long Juvenility and Is
Associated with Adaption of Tropic Soybean.
PG - 656-658
LID - S1674-2052(16)30303-3 [pii]
LID - 10.1016/j.molp.2016.12.004 [doi]
FAU - Yue, Yanlei
AU - Yue Y
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
MOA Key Lab of Soybean Biology (Beijing), Institute of Crop Science, The Chinese
Academy of Agricultural Sciences, Beijing 100081, China; Guangdong Provincial Key
Laboratory of Plant Molecular Breeding, South China Agricultural University,
Guangzhou 510642, China.
FAU - Liu, Nianxi
AU - Liu N
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Jiang, Bingjun
AU - Jiang B
AD - MOA Key Lab of Soybean Biology (Beijing), Institute of Crop Science, The Chinese
Academy of Agricultural Sciences, Beijing 100081, China.
FAU - Li, Mu
AU - Li M
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Wang, Haijie
AU - Wang H
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Institute of Crop Sciences, Hainan Academy of Agricultural Sciences, Haikou
571100, China.
FAU - Jiang, Ze
AU - Jiang Z
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Pan, Huanting
AU - Pan H
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Xia, Qiuju
AU - Xia Q
AD - BGI-Shenzhen, Shenzhen 518083, China.
FAU - Ma, Qibin
AU - Ma Q
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China.
FAU - Han, Tianfu
AU - Han T
AD - MOA Key Lab of Soybean Biology (Beijing), Institute of Crop Science, The Chinese
Academy of Agricultural Sciences, Beijing 100081, China. Electronic address:
hantianfu@caas.cn.
FAU - Nian, Hai
AU - Nian H
AD - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China;
Guangdong Provincial Key Laboratory of Plant Molecular Breeding, South China
Agricultural University, Guangzhou 510642, China. Electronic address:
hnian@scau.edu.cn.
LA - eng
PT - Letter
PT - Research Support, Non-U.S. Gov't
DEP - 20161212
PL - England
TA - Mol Plant
JT - Molecular plant
JID - 101465514
RN - 0 (Nucleotides)
RN - 0 (Plant Proteins)
SB - IM
MH - Adaptation, Physiological/*genetics
MH - Alleles
MH - Nucleotides/*genetics
MH - Plant Proteins/*genetics
MH - Polymorphism, Single Nucleotide/*genetics
MH - *Quantitative Trait, Heritable
MH - Sequence Deletion/*genetics
MH - Soybeans/*genetics/*physiology
EDAT- 2016/12/17 06:00
MHDA- 2018/11/14 06:00
CRDT- 2016/12/17 06:00
PHST- 2016/09/02 00:00 [received]
PHST- 2016/11/10 00:00 [revised]
PHST- 2016/12/06 00:00 [accepted]
PHST- 2016/12/17 06:00 [pubmed]
PHST- 2018/11/14 06:00 [medline]
PHST- 2016/12/17 06:00 [entrez]
AID - S1674-2052(16)30303-3 [pii]
AID - 10.1016/j.molp.2016.12.004 [doi]
PST - ppublish
SO - Mol Plant. 2017 Apr 3;10(4):656-658. doi: 10.1016/j.molp.2016.12.004. Epub 2016
Dec 12.
##### PUB RECORD #####
## 10.1038/ng.3819 28319089 null Lu, Zhao et al., 2017 "Lu S, Zhao X, Hu Y, Liu S, Nan H, Li X, Fang C, Cao D, Shi X, Kong L, Su T, Zhang F, Li S, Wang Z, Yuan X, Cober ER, Weller JL, Liu B, Hou X, Tian Z, Kong F. Natural variation at the soybean J locus improves adaptation to the tropics and enhances yield. Nat Genet. 2017 May;49(5):773-779. doi: 10.1038/ng.3819. Epub 2017 Mar 20. PMID: 28319089." ##
PMID- 28319089
OWN - NLM
STAT- MEDLINE
DCOM- 20170918
LR - 20220330
IS - 1546-1718 (Electronic)
IS - 1061-4036 (Linking)
VI - 49
IP - 5
DP - 2017 May
TI - Natural variation at the soybean J locus improves adaptation to the tropics and
enhances yield.
PG - 773-779
LID - 10.1038/ng.3819 [doi]
AB - Soybean is a major legume crop originating in temperate regions, and photoperiod
responsiveness is a key factor in its latitudinal adaptation. Varieties from
temperate regions introduced to lower latitudes mature early and have extremely
low grain yields. Introduction of the long-juvenile (LJ) trait extends the
vegetative phase and improves yield under short-day conditions, thereby enabling
expansion of cultivation in tropical regions. Here we report the cloning and
characterization of J, the major classical locus conferring the LJ trait, and
identify J as the ortholog of Arabidopsis thaliana EARLY FLOWERING 3 (ELF3). J
depends genetically on the legume-specific flowering repressor E1, and J protein
physically associates with the E1 promoter to downregulate its transcription,
relieving repression of two important FLOWERING LOCUS T (FT) genes and promoting
flowering under short days. Our findings identify an important new component in
flowering-time control in soybean and provide new insight into soybean adaptation
to tropical regions.
FAU - Lu, Sijia
AU - Lu S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Zhao, Xiaohui
AU - Zhao X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Hu, Yilong
AU - Hu Y
AD - Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic
Improvement, and Guangdong Provincial Key Laboratory of Applied Botany, South
China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Liu, Shulin
AU - Liu S
AD - University of the Chinese Academy of Sciences, Beijing, China.
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Nan, Haiyang
AU - Nan H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
FAU - Li, Xiaoming
AU - Li X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Fang, Chao
AU - Fang C
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Cao, Dong
AU - Cao D
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Shi, Xinyi
AU - Shi X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
FAU - Kong, Lingping
AU - Kong L
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Su, Tong
AU - Su T
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Zhang, Fengge
AU - Zhang F
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Li, Shichen
AU - Li S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - University of the Chinese Academy of Sciences, Beijing, China.
FAU - Wang, Zheng
AU - Wang Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Yuan, Xiaohui
AU - Yuan X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
FAU - Cober, Elroy R
AU - Cober ER
AUID- ORCID: 0000-0002-4673-1808
AD - Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada,
Central Experimental Farm, Ottawa, Ontario, Canada.
FAU - Weller, James L
AU - Weller JL
AD - School of Plant Science, University of Tasmania, Hobart, Tasmania, Australia.
FAU - Liu, Baohui
AU - Liu B
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
FAU - Hou, Xingliang
AU - Hou X
AD - Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic
Improvement, and Guangdong Provincial Key Laboratory of Applied Botany, South
China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
FAU - Tian, Zhixi
AU - Tian Z
AUID- ORCID: 0000-0001-6051-9670
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Kong, Fanjiang
AU - Kong F
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, China.
AD - School of Life Sciences, Guangzhou University, Guangzhou, China.
LA - eng
PT - Journal Article
DEP - 20170320
PL - United States
TA - Nat Genet
JT - Nature genetics
JID - 9216904
RN - 0 (Plant Proteins)
SB - IM
MH - Adaptation, Physiological/*genetics
MH - Amino Acid Sequence
MH - Base Sequence
MH - *Biomass
MH - China
MH - Flowers/genetics/growth & development
MH - Gene Expression Regulation, Developmental
MH - Gene Expression Regulation, Plant
MH - Gene Regulatory Networks
MH - Genetic Loci/*genetics
MH - *Genetic Variation
MH - Geography
MH - Mutation
MH - Plant Proteins/genetics/metabolism
MH - Promoter Regions, Genetic/genetics
MH - Sequence Homology, Amino Acid
MH - Sequence Homology, Nucleic Acid
MH - Soybeans/classification/*genetics/growth & development
MH - Species Specificity
MH - *Tropical Climate
EDAT- 2017/03/21 06:00
MHDA- 2017/09/19 06:00
CRDT- 2017/03/21 06:00
PHST- 2016/10/10 00:00 [received]
PHST- 2017/02/24 00:00 [accepted]
PHST- 2017/03/21 06:00 [pubmed]
PHST- 2017/09/19 06:00 [medline]
PHST- 2017/03/21 06:00 [entrez]
AID - ng.3819 [pii]
AID - 10.1038/ng.3819 [doi]
PST - ppublish
SO - Nat Genet. 2017 May;49(5):773-779. doi: 10.1038/ng.3819. Epub 2017 Mar 20.
##### PUB RECORD #####
## 10.1038/s41588-020-0604-7 32231277 null Lu, Dong et al., 2020 "Lu S, Dong L, Fang C, Liu S, Kong L, Cheng Q, Chen L, Su T, Nan H, Zhang D, Zhang L, Wang Z, Yang Y, Yu D, Liu X, Yang Q, Lin X, Tang Y, Zhao X, Yang X, Tian C, Xie Q, Li X, Yuan X, Tian Z, Liu B, Weller JL, Kong F. Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication. Nat Genet. 2020 Apr;52(4):428-436. doi: 10.1038/s41588-020-0604-7. Epub 2020 Mar 30. PMID: 32231277." ##
PMID- 32231277
OWN - NLM
STAT- MEDLINE
DCOM- 20200626
LR - 20220607
IS - 1546-1718 (Electronic)
IS - 1061-4036 (Linking)
VI - 52
IP - 4
DP - 2020 Apr
TI - Stepwise selection on homeologous PRR genes controlling flowering and maturity
during soybean domestication.
PG - 428-436
LID - 10.1038/s41588-020-0604-7 [doi]
AB - Adaptive changes in plant phenology are often considered to be a feature of the
so-called 'domestication syndrome' that distinguishes modern crops from their
wild progenitors, but little detailed evidence supports this idea. In soybean, a
major legume crop, flowering time variation is well characterized within
domesticated germplasm and is critical for modern production, but its importance
during domestication is unclear. Here, we identify sequential contributions of
two homeologous pseudo-response-regulator genes, Tof12 and Tof11, to ancient
flowering time adaptation, and demonstrate that they act via LHY homologs to
promote expression of the legume-specific E1 gene and delay flowering under long
photoperiods. We show that Tof12-dependent acceleration of maturity accompanied a
reduction in dormancy and seed dispersal during soybean domestication, possibly
predisposing the incipient crop to latitudinal expansion. Better understanding of
this early phase of crop evolution will help to identify functional variation
lost during domestication and exploit its potential for future crop improvement.
FAU - Lu, Sijia
AU - Lu S
AUID- ORCID: 0000-0002-3110-0915
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China.
FAU - Dong, Lidong
AU - Dong L
AUID- ORCID: 0000-0002-8085-1678
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Fang, Chao
AU - Fang C
AUID- ORCID: 0000-0003-0564-7586
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Liu, Shulin
AU - Liu S
AUID- ORCID: 0000-0002-0154-2966
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese
Academy of Sciences, Beijing, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Kong, Lingping
AU - Kong L
AUID- ORCID: 0000-0002-2671-7443
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Cheng, Qun
AU - Cheng Q
AUID- ORCID: 0000-0001-5595-2058
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Chen, Liyu
AU - Chen L
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Su, Tong
AU - Su T
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Nan, Haiyang
AU - Nan H
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Zhang, Dan
AU - Zhang D
AD - Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural
University, Zhengzhou, China.
FAU - Zhang, Lei
AU - Zhang L
AD - Anhui Academy of Agricultural Sciences, Hefei, China.
FAU - Wang, Zhijuan
AU - Wang Z
AD - State Key Laboratory of Agricultural Microbiology, College of Plant Science and
Technology, Huazhong Agricultural University, Wuhan, China.
FAU - Yang, Yongqing
AU - Yang Y
AD - Root Biology Center, College of Resources and Environment, Fujian Agriculture and
Forestry University, Fuzhou, China.
FAU - Yu, Deyue
AU - Yu D
AD - National Center for Soybean Improvement, National Key Laboratory of Crop Genetics
and Germplasm Enhancement, Nanjing Agricultural University, Nanjing, China.
FAU - Liu, Xiaolei
AU - Liu X
AD - Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction,
Ministry of Education & College of Animal Science and Technology, Huazhong
Agricultural University, Wuhan, China.
FAU - Yang, Qingyong
AU - Yang Q
AUID- ORCID: 0000-0002-3510-8906
AD - Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics,
Huazhong Agricultural University, Wuhan, China.
FAU - Lin, Xiaoya
AU - Lin X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Tang, Yang
AU - Tang Y
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Zhao, Xiaohui
AU - Zhao X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Yang, Xinquan
AU - Yang X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Tian, Changen
AU - Tian C
AUID- ORCID: 0000-0002-8410-6624
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Xie, Qiguang
AU - Xie Q
AD - Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan
University, Kaifeng, China.
FAU - Li, Xia
AU - Li X
AD - State Key Laboratory of Agricultural Microbiology, College of Plant Science and
Technology, Huazhong Agricultural University, Wuhan, China.
FAU - Yuan, Xiaohui
AU - Yuan X
AUID- ORCID: 0000-0003-0661-5332
AD - School of Computer Science and Technology, Wuhan University of Technology, Wuhan,
China. yuanxiaohui@whut.edu.cn.
FAU - Tian, Zhixi
AU - Tian Z
AUID- ORCID: 0000-0001-6051-9670
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Innovative Academy of Seed Design, Chinese
Academy of Sciences, Beijing, China. zxtian@genetics.ac.cn.
AD - University of Chinese Academy of Sciences, Beijing, China. zxtian@genetics.ac.cn.
FAU - Liu, Baohui
AU - Liu B
AUID- ORCID: 0000-0003-3491-8293
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China. liubh@iga.ac.cn.
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China. liubh@iga.ac.cn.
FAU - Weller, James L
AU - Weller JL
AUID- ORCID: 0000-0003-2423-8286
AD - School of Natural Sciences, University of Tasmania, Hobart, Tasmania, Australia.
jim.weller@utas.edu.au.
FAU - Kong, Fanjiang
AU - Kong F
AUID- ORCID: 0000-0001-7138-1478
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China. kongfj@gzhu.edu.cn.
AD - The Innovative Academy of Seed Design, Key Laboratory of Soybean Molecular Design
Breeding, Northeast Institute of Geography and Agroecology, Chinese Academy of
Sciences, Harbin, China. kongfj@gzhu.edu.cn.
AD - University of Chinese Academy of Sciences, Beijing, China. kongfj@gzhu.edu.cn.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20200330
PL - United States
TA - Nat Genet
JT - Nature genetics
JID - 9216904
SB - IM
MH - Crops, Agricultural/*genetics
MH - Domestication
MH - Fabaceae/genetics
MH - Flowers/*genetics
MH - Genes, Plant/*genetics
MH - Photoperiod
MH - Seeds/genetics
MH - Soybeans/*genetics
EDAT- 2020/04/02 06:00
MHDA- 2020/06/27 06:00
CRDT- 2020/04/02 06:00
PHST- 2019/10/09 00:00 [received]
PHST- 2020/02/27 00:00 [accepted]
PHST- 2020/04/02 06:00 [pubmed]
PHST- 2020/06/27 06:00 [medline]
PHST- 2020/04/02 06:00 [entrez]
AID - 10.1038/s41588-020-0604-7 [pii]
AID - 10.1038/s41588-020-0604-7 [doi]
PST - ppublish
SO - Nat Genet. 2020 Apr;52(4):428-436. doi: 10.1038/s41588-020-0604-7. Epub 2020 Mar
30.
##### PUB RECORD #####
## 10.1093/aob/mct269 24284817 PMC3906962 Tsubokura, Watanabe et al., 2013 "Tsubokura Y, Watanabe S, Xia Z, Kanamori H, Yamagata H, Kaga A, Katayose Y, Abe J, Ishimoto M, Harada K. Natural variation in the genes responsible for maturity loci E1, E2, E3 and E4 in soybean. Ann Bot. 2014 Feb;113(3):429-41. doi: 10.1093/aob/mct269. Epub 2013 Nov 26. PMID: 24284817; PMCID: PMC3906962." ##
PMID- 24284817
OWN - NLM
STAT- MEDLINE
DCOM- 20140929
LR - 20220309
IS - 1095-8290 (Electronic)
IS - 0305-7364 (Print)
IS - 0305-7364 (Linking)
VI - 113
IP - 3
DP - 2014 Feb
TI - Natural variation in the genes responsible for maturity loci E1, E2, E3 and E4 in
soybean.
PG - 429-41
LID - 10.1093/aob/mct269 [doi]
AB - BACKGROUND AND AIMS: The timing of flowering has a direct impact on successful
seed production in plants. Flowering of soybean (Glycine max) is controlled by
several E loci, and previous studies identified the genes responsible for the
flowering loci E1, E2, E3 and E4. However, natural variation in these genes has
not been fully elucidated. The aims of this study were the identification of new
alleles, establishment of allele diagnoses, examination of allelic combinations
for adaptability, and analysis of the integrated effect of these loci on
flowering. METHODS: The sequences of these genes and their flanking regions were
determined for 39 accessions by primer walking. Systematic discrimination among
alleles was performed using DNA markers. Genotypes at the E1-E4 loci were
determined for 63 accessions covering several ecological types using DNA markers
and sequencing, and flowering times of these accessions at three sowing times
were recorded. KEY RESULTS: A new allele with an insertion of a long interspersed
nuclear element (LINE) at the promoter of the E1 locus (e1-re) was identified.
Insertion and deletion of 36 bases in the eighth intron (E2-in and E2-dl) were
observed at the E2 locus. Systematic discrimination among the alleles at the
E1-E3 loci was achieved using PCR-based markers. Allelic combinations at the
E1-E4 loci were found to be associated with ecological types, and about 62-66 %
of variation of flowering time could be attributed to these loci. CONCLUSIONS:
The study advances understanding of the combined roles of the E1-E4 loci in
flowering and geographic adaptation, and suggests the existence of unidentified
genes for flowering in soybean.
FAU - Tsubokura, Yasutaka
AU - Tsubokura Y
AD - National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 306-8602, Japan.
FAU - Watanabe, Satoshi
AU - Watanabe S
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Kanamori, Hiroyuki
AU - Kanamori H
FAU - Yamagata, Harumi
AU - Yamagata H
FAU - Kaga, Akito
AU - Kaga A
FAU - Katayose, Yuichi
AU - Katayose Y
FAU - Abe, Jun
AU - Abe J
FAU - Ishimoto, Masao
AU - Ishimoto M
FAU - Harada, Kyuya
AU - Harada K
LA - eng
SI - GENBANK/AB795360
SI - GENBANK/AB795361
SI - GENBANK/AB795362
SI - GENBANK/AB795363
SI - GENBANK/AB795364
SI - GENBANK/AB795365
SI - GENBANK/AB795366
SI - GENBANK/AB795367
SI - GENBANK/AB795368
SI - GENBANK/AB795369
SI - GENBANK/AB795370
SI - GENBANK/AB795371
SI - GENBANK/AB795372
SI - GENBANK/AB795373
SI - GENBANK/AB795374
SI - GENBANK/AB795375
SI - GENBANK/AB795376
SI - GENBANK/AB795377
SI - GENBANK/AB795378
SI - GENBANK/AB795379
SI - GENBANK/AB795380
SI - GENBANK/AB795381
SI - GENBANK/AB795382
SI - GENBANK/AB795383
SI - GENBANK/AB795384
SI - GENBANK/AB795385
SI - GENBANK/AB795386
SI - GENBANK/AB795387
SI - GENBANK/AB795388
SI - GENBANK/AB795389
SI - GENBANK/AB795390
SI - GENBANK/AB795391
SI - GENBANK/AB795392
SI - GENBANK/AB797147
SI - GENBANK/AB797148
SI - GENBANK/AB797149
SI - GENBANK/AB797150
SI - GENBANK/AB797151
SI - GENBANK/AB797152
SI - GENBANK/AB797153
SI - GENBANK/AB797154
SI - GENBANK/AB797155
SI - GENBANK/AB797156
SI - GENBANK/AB797157
SI - GENBANK/AB797158
SI - GENBANK/AB797159
SI - GENBANK/AB797160
SI - GENBANK/AB797161
SI - GENBANK/AB797162
SI - GENBANK/AB797163
SI - GENBANK/AB797164
SI - GENBANK/AB797165
SI - GENBANK/AB797166
SI - GENBANK/AB797167
SI - GENBANK/AB797168
SI - GENBANK/AB797169
SI - GENBANK/AB797170
SI - GENBANK/AB797171
SI - GENBANK/AB797172
SI - GENBANK/AB797173
SI - GENBANK/AB797174
SI - GENBANK/AB797175
SI - GENBANK/AB797176
SI - GENBANK/AB797177
SI - GENBANK/AB797178
SI - GENBANK/AB797179
SI - GENBANK/AB797180
SI - GENBANK/AB797181
SI - GENBANK/AB797182
SI - GENBANK/AB797183
SI - GENBANK/AB797184
SI - GENBANK/AB797185
SI - GENBANK/AB797186
SI - GENBANK/AB797187
SI - GENBANK/AB797188
SI - GENBANK/AB797189
SI - GENBANK/AB797190
SI - GENBANK/AB797191
SI - GENBANK/AB797192
SI - GENBANK/AB797193
SI - GENBANK/AB797194
SI - GENBANK/AB797195
SI - GENBANK/AB797196
SI - GENBANK/AB797197
SI - GENBANK/AB797198
SI - GENBANK/AB797199
SI - GENBANK/AB797200
SI - GENBANK/AB797201
SI - GENBANK/AB797202
SI - GENBANK/AB797203
SI - GENBANK/AB797204
SI - GENBANK/AB797205
SI - GENBANK/AB797206
SI - GENBANK/AB797207
SI - GENBANK/AB797208
SI - GENBANK/AB797209
SI - GENBANK/AB797210
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20131126
PL - England
TA - Ann Bot
JT - Annals of botany
JID - 0372347
RN - 0 (Genetic Markers)
RN - 0 (Plant Proteins)
SB - IM
MH - Adaptation, Physiological
MH - Alleles
MH - Base Sequence
MH - Chromosome Mapping
MH - Flowers/genetics/physiology
MH - *Gene Expression Regulation, Plant
MH - Genetic Loci/genetics
MH - Genetic Markers/genetics
MH - *Genetic Variation
MH - Genotype
MH - Haplotypes
MH - Molecular Sequence Data
MH - Photoperiod
MH - Plant Proteins/*genetics/metabolism
MH - Polymorphism, Single Nucleotide
MH - Quantitative Trait Loci/*genetics
MH - Seeds/genetics/physiology
MH - Sequence Alignment
MH - Sequence Analysis, DNA
MH - Soybeans/*genetics/physiology
MH - Time Factors
PMC - PMC3906962
OTO - NOTNLM
OT - E locus
OT - Glycine max
OT - SNP
OT - ecological type
OT - flowering time
OT - haplotype
OT - marker-assisted selection
OT - single nucleotide polymorphism
OT - soybean
EDAT- 2013/11/29 06:00
MHDA- 2014/09/30 06:00
CRDT- 2013/11/29 06:00
PHST- 2013/11/29 06:00 [entrez]
PHST- 2013/11/29 06:00 [pubmed]
PHST- 2014/09/30 06:00 [medline]
AID - mct269 [pii]
AID - 10.1093/aob/mct269 [doi]
PST - ppublish
SO - Ann Bot. 2014 Feb;113(3):429-41. doi: 10.1093/aob/mct269. Epub 2013 Nov 26.
##### PUB RECORD #####
## 10.1093/jxb/erw283 27422993 PMC5014162 Takeshima, Hayashi et al., 2016 "Takeshima R, Hayashi T, Zhu J, Zhao C, Xu M, Yamaguchi N, Sayama T, Ishimoto M, Kong L, Shi X, Liu B, Tian Z, Yamada T, Kong F, Abe J. A soybean quantitative trait locus that promotes flowering under long days is identified as FT5a, a FLOWERING LOCUS T ortholog. J Exp Bot. 2016 Sep;67(17):5247-58. doi: 10.1093/jxb/erw283. Epub 2016 Jul 15. PMID: 27422993; PMCID: PMC5014162." ##
PMID- 27422993
OWN - NLM
STAT- MEDLINE
DCOM- 20171107
LR - 20181113
IS - 1460-2431 (Electronic)
IS - 0022-0957 (Print)
IS - 0022-0957 (Linking)
VI - 67
IP - 17
DP - 2016 Sep
TI - A soybean quantitative trait locus that promotes flowering under long days is
identified as FT5a, a FLOWERING LOCUS T ortholog.
PG - 5247-58
LID - 10.1093/jxb/erw283 [doi]
AB - FLOWERING LOCUS T (FT) is an important floral integrator whose functions are
conserved across plant species. In soybean, two orthologs, FT2a and FT5a, play a
major role in initiating flowering. Their expression in response to different
photoperiods is controlled by allelic combinations at the maturity loci E1 to E4,
generating variation in flowering time among cultivars. We determined the
molecular basis of a quantitative trait locus (QTL) for flowering time in linkage
group J (Chromosome 16). Fine-mapping delimited the QTL to a genomic region of
107kb that harbors FT5a We detected 15 DNA polymorphisms between parents with the
early-flowering (ef) and late-flowering (lf) alleles in the promoter region, an
intron, and the 3' untranslated region of FT5a, although the FT5a coding regions
were identical. Transcript abundance of FT5a was higher in near-isogenic lines
for ef than in those for lf, suggesting that different transcriptional activities
or mRNA stability caused the flowering time difference. Single-nucleotide
polymorphism (SNP) calling from re-sequencing data for 439 cultivated and wild
soybean accessions indicated that ef is a rare haplotype that is distinct from
common haplotypes including lf The ef allele at FT5a may play an adaptive role at
latitudes where early flowering is desirable.
CI - (c) The Author 2016. Published by Oxford University Press on behalf of the Society
for Experimental Biology.
FAU - Takeshima, Ryoma
AU - Takeshima R
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Hayashi, Takafumi
AU - Hayashi T
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Zhu, Jianghui
AU - Zhu J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Zhao, Chen
AU - Zhao C
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Xu, Meilan
AU - Xu M
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Yamaguchi, Naoya
AU - Yamaguchi N
AD - Hokkaido Research Organization Tokachi Agricultural Experiment Station, Memuro,
Hokkaido 082-0081, Japan.
FAU - Sayama, Takashi
AU - Sayama T
AD - National Institute of Agrobiological Sciences, Kannondai, Ibaraki 305-8602,
Japan.
FAU - Ishimoto, Masao
AU - Ishimoto M
AD - National Institute of Agrobiological Sciences, Kannondai, Ibaraki 305-8602,
Japan.
FAU - Kong, Lingping
AU - Kong L
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Shi, Xinyi
AU - Shi X
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Liu, Baohui
AU - Liu B
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
FAU - Tian, Zhixi
AU - Tian Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 1001014,
China.
FAU - Yamada, Tetsuya
AU - Yamada T
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan.
FAU - Kong, Fanjiang
AU - Kong F
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
kongfj@iga.ac.cn jabe@res.agr.hokucai.ac.jp.
FAU - Abe, Jun
AU - Abe J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido 060-8589,
Japan kongfj@iga.ac.cn jabe@res.agr.hokucai.ac.jp.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20160715
PL - England
TA - J Exp Bot
JT - Journal of experimental botany
JID - 9882906
RN - 0 (Plant Proteins)
SB - IM
MH - Flowers/*genetics/growth & development/physiology
MH - Gene Expression Regulation, Plant
MH - Genes, Plant/genetics/physiology
MH - Photoperiod
MH - Plant Proteins/genetics/physiology
MH - Polymorphism, Single Nucleotide/genetics
MH - Quantitative Trait Loci/*genetics/physiology
MH - Sequence Analysis, DNA
MH - Soybeans/*genetics/growth & development/physiology
PMC - PMC5014162
OTO - NOTNLM
OT - FLOWERING LOCUS T
OT - SNP calling
OT - flowering time
OT - near-isogenic line
OT - photoperiod sensitivity
OT - quantitative trait locus
OT - soybean.
EDAT- 2016/07/17 06:00
MHDA- 2017/11/08 06:00
CRDT- 2016/07/17 06:00
PHST- 2016/07/17 06:00 [entrez]
PHST- 2016/07/17 06:00 [pubmed]
PHST- 2017/11/08 06:00 [medline]
AID - erw283 [pii]
AID - 10.1093/jxb/erw283 [doi]
PST - ppublish
SO - J Exp Bot. 2016 Sep;67(17):5247-58. doi: 10.1093/jxb/erw283. Epub 2016 Jul 15.
##### PUB RECORD #####
## 10.1104/pp.15.00763 26134161 PMC4528769 Xu, Yamagishi et al., 2015 "Xu M, Yamagishi N, Zhao C, Takeshima R, Kasai M, Watanabe S, Kanazawa A, Yoshikawa N, Liu B, Yamada T, Abe J. The Soybean-Specific Maturity Gene E1 Family of Floral Repressors Controls Night-Break Responses through Down-Regulation of FLOWERING LOCUS T Orthologs. Plant Physiol. 2015 Aug;168(4):1735-46. doi: 10.1104/pp.15.00763. Epub 2015 Jul 1. PMID: 26134161; PMCID: PMC4528769." ##
PMID- 26134161
OWN - NLM
STAT- MEDLINE
DCOM- 20160511
LR - 20220309
IS - 1532-2548 (Electronic)
IS - 0032-0889 (Print)
IS - 0032-0889 (Linking)
VI - 168
IP - 4
DP - 2015 Aug
TI - The Soybean-Specific Maturity Gene E1 Family of Floral Repressors Controls
Night-Break Responses through Down-Regulation of FLOWERING LOCUS T Orthologs.
PG - 1735-46
LID - 10.1104/pp.15.00763 [doi]
AB - Photoperiodism is a rhythmic change of sensitivity to light, which helps plants
to adjust flowering time according to seasonal changes in daylength and to adapt
to growing conditions at various latitudes. To reveal the molecular basis of
photoperiodism in soybean (Glycine max), a facultative short-day plant, we
analyzed the transcriptional profiles of the maturity gene E1 family and two
FLOWERING LOCUS T (FT) orthologs (FT2a and FT5a). E1, a repressor for FT2a and
FT5a, and its two homologs, E1-like-a (E1La) and E1Lb, exhibited two peaks of
expression in long days. Using two different approaches (experiments with
transition between light and dark phases and night-break experiments), we
revealed that the E1 family genes were expressed only during light periods and
that their induction after dawn in long days required a period of light before
dusk the previous day. In the cultivar Toyomusume, which lacks the E1 gene,
virus-induced silencing of E1La and E1Lb up-regulated the expression of FT2a and
FT5a and led to early flowering. Therefore, E1, E1La, and E1Lb function similarly
in flowering. Regulation of E1 and E1L expression by light was under the control
of E3 and E4, which encode phytochrome A proteins. Our data suggest that
phytochrome A-mediated transcriptional induction of E1 and its homologs by light
plays a critical role in photoperiodic induction of flowering in soybean.
CI - (c) 2015 American Society of Plant Biologists. All Rights Reserved.
FAU - Xu, Meilan
AU - Xu M
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Yamagishi, Noriko
AU - Yamagishi N
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Zhao, Chen
AU - Zhao C
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Takeshima, Ryoma
AU - Takeshima R
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Kasai, Megumi
AU - Kasai M
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Kanazawa, Akira
AU - Kanazawa A
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Yoshikawa, Nobuyuki
AU - Yoshikawa N
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Liu, Baohui
AU - Liu B
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.)
liubh@neigaehrb.ac.cn jabe@res.agr.hokudai.ac.jp.
FAU - Yamada, Tetsuya
AU - Yamada T
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.).
FAU - Abe, Jun
AU - Abe J
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
(M.X., B.L.);Faculty of Agriculture, Iwate University, Morioka, Iwate 020-8550,
Japan (N.Ya., N.Yo.);Research Faculty of Agriculture, Hokkaido University,
Sapporo, Hokkaido 060-8589, Japan (C.Z., R.T., M.K., A.K., T.Y., J.A.);
andandFaculty of Agriculture, Saga University, Saga 840-0027, Japan (S.W.)
liubh@neigaehrb.ac.cn jabe@res.agr.hokudai.ac.jp.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20150701
PL - United States
TA - Plant Physiol
JT - Plant physiology
JID - 0401224
RN - 0 (Plant Proteins)
SB - IM
MH - Amino Acid Sequence
MH - *Down-Regulation
MH - Flowers/*genetics
MH - Gene Expression Regulation, Plant/radiation effects
MH - Light
MH - Molecular Sequence Data
MH - Photoperiod
MH - Plant Proteins/*genetics
MH - RNA Interference
MH - Reverse Transcriptase Polymerase Chain Reaction
MH - Sequence Homology, Amino Acid
MH - Soybeans/*genetics
PMC - PMC4528769
EDAT- 2015/07/03 06:00
MHDA- 2016/05/12 06:00
CRDT- 2015/07/03 06:00
PHST- 2015/05/21 00:00 [received]
PHST- 2015/06/29 00:00 [accepted]
PHST- 2015/07/03 06:00 [entrez]
PHST- 2015/07/03 06:00 [pubmed]
PHST- 2016/05/12 06:00 [medline]
AID - pp.15.00763 [pii]
AID - PP201500763 [pii]
AID - 10.1104/pp.15.00763 [doi]
PST - ppublish
SO - Plant Physiol. 2015 Aug;168(4):1735-46. doi: 10.1104/pp.15.00763. Epub 2015 Jul
1.
##### PUB RECORD #####
## 10.1104/pp.110.160796 20864544 PMC2971601 Kong, Liu et al., 2010 "Kong F, Liu B, Xia Z, Sato S, Kim BM, Watanabe S, Yamada T, Tabata S, Kanazawa A, Harada K, Abe J. Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean. Plant Physiol. 2010 Nov;154(3):1220-31. doi: 10.1104/pp.110.160796. Epub 2010 Sep 23. PMID: 20864544; PMCID: PMC2971601." ##
PMID- 20864544
OWN - NLM
STAT- MEDLINE
DCOM- 20110210
LR - 20220408
IS - 1532-2548 (Electronic)
IS - 0032-0889 (Print)
IS - 0032-0889 (Linking)
VI - 154
IP - 3
DP - 2010 Nov
TI - Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the
control of photoperiodic flowering in soybean.
PG - 1220-31
LID - 10.1104/pp.110.160796 [doi]
AB - FLOWERING LOCUS T (FT) is a key flowering integrator in Arabidopsis (Arabidopsis
thaliana), with homologs that encode florigens in many plant species regardless
of the type of photoperiodic response. We identified 10 FT homologs, which were
arranged as five pairs of linked genes in different homoeologous chromosomal
regions, in soybean (Glycine max), a paleopolyploid species. Two of the FT
homologs, GmFT2a and GmFT5a, were highly up-regulated under short-day (SD)
conditions (inductive for flowering in soybean) and had diurnal expression
patterns with the highest expression 4 h after dawn. Under long-day (LD)
conditions, expression of GmFT2a and GmFT5a was down-regulated and did not follow
a diurnal pattern. Flowering took much longer to initiate under LD than under SD,
and only the GmFT5a transcript accumulated late in development under LD. Ectopic
expression analysis in Arabidopsis confirmed that both GmFT2a and GmFT5a had the
same function as Arabidopsis FT, but the effect of GmFT5a was more prominent. A
double-mutant soybean line for two PHYTOCHROME A (PHYA) genes expressed high
levels of GmFT2a and GmFT5a under LD, and it flowered slightly earlier under LD
than the wild type grown under SD. The expression levels of GmFT2a and GmFT5a
were regulated by the PHYA-mediated photoperiodic regulation system, and the
GmFT5a expression was also regulated by a photoperiod-independent system in LD.
Taken together, our results suggest that GmFT2a and GmFT5a coordinately control
flowering and enable the adaptation of soybean to a wide range of photoperiodic
environments.
FAU - Kong, Fanjiang
AU - Kong F
AD - Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences,
Harbin, China.
FAU - Liu, Baohui
AU - Liu B
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Sato, Shusei
AU - Sato S
FAU - Kim, Bo Min
AU - Kim BM
FAU - Watanabe, Satoshi
AU - Watanabe S
FAU - Yamada, Tetsuya
AU - Yamada T
FAU - Tabata, Satoshi
AU - Tabata S
FAU - Kanazawa, Akira
AU - Kanazawa A
FAU - Harada, Kyuya
AU - Harada K
FAU - Abe, Jun
AU - Abe J
LA - eng
SI - GENBANK/AB550120
SI - GENBANK/AB550121
SI - GENBANK/AB550122
SI - GENBANK/AB550124
SI - GENBANK/AB550125
SI - GENBANK/AB550126
SI - GENBANK/AP011804
SI - GENBANK/AP011805
SI - GENBANK/AP011806
SI - GENBANK/AP011807
SI - GENBANK/AP011808
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20100923
PL - United States
TA - Plant Physiol
JT - Plant physiology
JID - 0401224
RN - 0 (DNA, Plant)
RN - 0 (Plant Proteins)
SB - IM
MH - Amino Acid Sequence
MH - Arabidopsis/genetics
MH - Chromosome Mapping
MH - DNA, Plant/genetics
MH - Flowers/*physiology
MH - Gene Expression Regulation, Plant
MH - Molecular Sequence Data
MH - *Photoperiod
MH - Plant Proteins/genetics/*metabolism
MH - Plants, Genetically Modified/genetics
MH - Sequence Alignment
MH - Sequence Analysis, DNA
MH - Soybeans/*genetics/metabolism/physiology
PMC - PMC2971601
EDAT- 2010/09/25 06:00
MHDA- 2011/02/11 06:00
CRDT- 2010/09/25 06:00
PHST- 2010/09/25 06:00 [entrez]
PHST- 2010/09/25 06:00 [pubmed]
PHST- 2011/02/11 06:00 [medline]
AID - pp.110.160796 [pii]
AID - 160796 [pii]
AID - 10.1104/pp.110.160796 [doi]
PST - ppublish
SO - Plant Physiol. 2010 Nov;154(3):1220-31. doi: 10.1104/pp.110.160796. Epub 2010 Sep
23.
##### PUB RECORD #####
## 10.1105/tpc.114.135103 25663621 PMC4456927 Wang, Zhou et al., 2015 "Wang Z, Zhou Z, Liu Y, Liu T, Li Q, Ji Y, Li C, Fang C, Wang M, Wu M, Shen Y, Tang T, Ma J, Tian Z. Functional evolution of phosphatidylethanolamine binding proteins in soybean and Arabidopsis. Plant Cell. 2015 Feb;27(2):323-36. doi: 10.1105/tpc.114.135103. Epub 2015 Feb 6. PMID: 25663621; PMCID: PMC4456927." ##
PMID- 25663621
OWN - NLM
STAT- MEDLINE
DCOM- 20151201
LR - 20220309
IS - 1532-298X (Electronic)
IS - 1040-4651 (Print)
IS - 1040-4651 (Linking)
VI - 27
IP - 2
DP - 2015 Feb
TI - Functional evolution of phosphatidylethanolamine binding proteins in soybean and
Arabidopsis.
PG - 323-36
LID - 10.1105/tpc.114.135103 [doi]
AB - Gene duplication provides resources for novel gene functions. Identification of
the amino acids responsible for functional conservation and divergence of
duplicated genes will strengthen our understanding of their evolutionary course.
Here, we conducted a systemic functional investigation of
phosphatidylethanolamine binding proteins (PEBPs) in soybean (Glycine max) and
Arabidopsis thaliana. Our results demonstrated that after the ancestral
duplication, the lineage of the common ancestor of the FLOWERING LOCUS T (FT) and
TERMINAL FLOWER1 (TFL1) subfamilies functionally diverged from the MOTHER OF FT
AND TFL1 (MFT) subfamily to activate flowering and repress flowering,
respectively. They also underwent further specialization after subsequent
duplications. Although the functional divergence increased with duplication age,
we observed rapid functional divergence for a few pairs of young duplicates in
soybean. Association analysis between amino acids and functional variations
identified critical amino acid residues that led to functional differences in
PEBP members. Using transgenic analysis, we validated a subset of these
differences. We report clear experimental evidence for the functional evolution
of the PEBPs in the MFT, FT, and TFL1 subfamilies, which predate the origin of
angiosperms. Our results highlight the role of amino acid divergence in driving
evolutionary novelty after duplication.
CI - (c) 2015 American Society of Plant Biologists. All rights reserved.
FAU - Wang, Zheng
AU - Wang Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China.
FAU - Zhou, Zhengkui
AU - Zhou Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China.
FAU - Liu, Yunfeng
AU - Liu Y
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Liu, Tengfei
AU - Liu T
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Li, Qing
AU - Li Q
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Ji, Yuanyuan
AU - Ji Y
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Li, Congcong
AU - Li C
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Fang, Chao
AU - Fang C
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Wang, Min
AU - Wang M
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Wu, Mian
AU - Wu M
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China.
FAU - Shen, Yanting
AU - Shen Y
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China University of Chinese Academy of Sciences, Beijing 100039, China.
FAU - Tang, Tian
AU - Tang T
AD - State Key Laboratory of Biocontrol and Key Laboratory of Biodiversity Dynamics
and Conservation of Guangdong Higher Education Institutes, Grant School of Life
Sciences, Sun Yat-Sen University, Guangzhou 510080, China lsstt@mail.sysu.edu.cn
maj@purdue.edu zxtian@genetics.ac.cn.
FAU - Ma, Jianxin
AU - Ma J
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907
lsstt@mail.sysu.edu.cn maj@purdue.edu zxtian@genetics.ac.cn.
FAU - Tian, Zhixi
AU - Tian Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101,
China lsstt@mail.sysu.edu.cn maj@purdue.edu zxtian@genetics.ac.cn.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20150206
PL - England
TA - Plant Cell
JT - The Plant cell
JID - 9208688
RN - 0 (Amino Acids)
RN - 0 (Phosphatidylethanolamine Binding Protein)
RN - 0 (Plant Proteins)
SB - IM
MH - Amino Acid Sequence
MH - Amino Acids/metabolism
MH - Arabidopsis/*genetics/metabolism
MH - *Evolution, Molecular
MH - Flowers/physiology
MH - Gene Expression Regulation, Plant
MH - Genes, Duplicate
MH - Genes, Plant
MH - Molecular Sequence Data
MH - Phosphatidylethanolamine Binding Protein/chemistry/*genetics/*metabolism
MH - Plant Proteins/metabolism
MH - Protein Binding
MH - Protein Transport
MH - Soybeans/*genetics/metabolism
MH - Subcellular Fractions/metabolism
PMC - PMC4456927
EDAT- 2015/02/11 06:00
MHDA- 2015/12/15 06:00
CRDT- 2015/02/10 06:00
PHST- 2015/02/10 06:00 [entrez]
PHST- 2015/02/11 06:00 [pubmed]
PHST- 2015/12/15 06:00 [medline]
AID - tpc.114.135103 [pii]
AID - 135103 [pii]
AID - 10.1105/tpc.114.135103 [doi]
PST - ppublish
SO - Plant Cell. 2015 Feb;27(2):323-36. doi: 10.1105/tpc.114.135103. Epub 2015 Feb 6.
##### PUB RECORD #####
## 10.1111/j.1365-313x.2004.02072.x 15125772 null Noh, Bizzell et al., 2004 "Noh YS, Bizzell CM, Noh B, Schomburg FM, Amasino RM. EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis. Plant J. 2004 May;38(4):664-72. doi: 10.1111/j.1365-313X.2004.02072.x. PMID: 15125772." ##
PMID- 15125772
OWN - NLM
STAT- MEDLINE
DCOM- 20040709
LR - 20061115
IS - 0960-7412 (Print)
IS - 0960-7412 (Linking)
VI - 38
IP - 4
DP - 2004 May
TI - EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis.
PG - 664-72
AB - EARLY FLOWERING 5 (ELF5) is a single-copy gene involved in flowering time
regulation in Arabidopsis. ELF5 encodes a nuclear-targeted protein that is
related to the human nuclear protein containing a WW domain (Npw)38-binding
protein (NpwBP). Lesions in ELF5 cause early flowering in both long days and
short days. elf5 mutations partially suppress the late flowering of both
autonomous-pathway mutants and FRIGIDA (FRI)-containing lines by reducing the
expression of FLOWERING LOCUS C (FLC), a floral repressor upon which many of the
flowering pathways converge. elf5 mutations also partially suppress
photoperiod-pathway mutants, and this, along with the ability of elf5 mutations
to cause early flowering in short days, indicates that ELF5 also affects
flowering independently of FLC.
FAU - Noh, Yoo-Sun
AU - Noh YS
AD - Department of Biochemistry, College of Agricultural and Life Sciences, University
of Wisconsin, Madison, WI 53706-1544, USA.
FAU - Bizzell, Colleen M
AU - Bizzell CM
FAU - Noh, Bosl
AU - Noh B
FAU - Schomburg, Fritz M
AU - Schomburg FM
FAU - Amasino, Richard M
AU - Amasino RM
LA - eng
SI - GENBANK/AY526094
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
PT - Research Support, U.S. Gov't, Non-P.H.S.
PL - England
TA - Plant J
JT - The Plant journal : for cell and molecular biology
JID - 9207397
RN - 0 (5' Untranslated Regions)
RN - 0 (Arabidopsis Proteins)
RN - 0 (DNA Primers)
RN - 0 (ELF5 protein, Arabidopsis)
RN - 0 (Repressor Proteins)
SB - IM
MH - 5' Untranslated Regions/genetics
MH - Amino Acid Sequence
MH - Arabidopsis/*genetics
MH - Arabidopsis Proteins/*genetics
MH - Base Sequence
MH - Circadian Rhythm
MH - DNA Primers
MH - Flowers/genetics
MH - Molecular Sequence Data
MH - Polymerase Chain Reaction
MH - Protein Biosynthesis/genetics
MH - Repressor Proteins/*genetics
MH - Seasons
MH - Sequence Alignment
MH - Sequence Homology, Amino Acid
EDAT- 2004/05/06 05:00
MHDA- 2004/07/10 05:00
CRDT- 2004/05/06 05:00
PHST- 2004/05/06 05:00 [pubmed]
PHST- 2004/07/10 05:00 [medline]
PHST- 2004/05/06 05:00 [entrez]
AID - TPJ2072 [pii]
AID - 10.1111/j.1365-313X.2004.02072.x [doi]
PST - ppublish
SO - Plant J. 2004 May;38(4):664-72. doi: 10.1111/j.1365-313X.2004.02072.x.
##### PUB RECORD #####
## 10.1111/jipb.13021 33090664 null Lin, Liu et al., 2021 "Lin X, Liu B, Weller JL, Abe J, Kong F. Molecular mechanisms for the photoperiodic regulation of flowering in soybean. J Integr Plant Biol. 2021 Jun;63(6):981-994. doi: 10.1111/jipb.13021. Epub 2021 Apr 26. PMID: 33090664." ##
PMID- 33090664
OWN - NLM
STAT- MEDLINE
DCOM- 20210804
LR - 20210804
IS - 1744-7909 (Electronic)
IS - 1672-9072 (Linking)
VI - 63
IP - 6
DP - 2021 Jun
TI - Molecular mechanisms for the photoperiodic regulation of flowering in soybean.
PG - 981-994
LID - 10.1111/jipb.13021 [doi]
AB - Photoperiodic flowering is one of the most important factors affecting regional
adaptation and yield in soybean (Glycine max). Plant adaptation to long-day
conditions at higher latitudes requires early flowering and a reduction or loss
of photoperiod sensitivity; adaptation to short-day conditions at lower latitudes
involves delayed flowering, which prolongs vegetative growth for maximum yield
potential. Due to the influence of numerous major loci and quantitative trait
loci (QTLs), soybean has broad adaptability across latitudes. Forward genetic
approaches have uncovered the molecular basis for several of these major maturity
genes and QTLs. Moreover, the molecular characterization of orthologs of
Arabidopsis thaliana flowering genes has enriched our understanding of the
photoperiodic flowering pathway in soybean. Building on early insights into the
importance of the photoreceptor phytochrome A, several circadian clock components
have been integrated into the genetic network controlling flowering in soybean:
E1, a repressor of FLOWERING LOCUS T orthologs, plays a central role in this
network. Here, we provide an overview of recent progress in elucidating
photoperiodic flowering in soybean, how it contributes to our fundamental
understanding of flowering time control, and how this information could be used
for molecular design and breeding of high-yielding soybean cultivars.
CI - (c) 2020 Institute of Botany, Chinese Academy of Sciences.
FAU - Lin, Xiaoya
AU - Lin X
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, 510642, China.
FAU - Liu, Baohui
AU - Liu B
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, 510642, China.
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
FAU - Weller, James L
AU - Weller JL
AD - School of Natural Sciences, University of Tasmania, Hobart, Tasmania, 7001,
Australia.
FAU - Abe, Jun
AU - Abe J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, 060-8589, Japan.
FAU - Kong, Fanjiang
AU - Kong F
AD - Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, 510642, China.
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
LA - eng
GR - National Natural Science Foundation of China/
GR - State Key Laboratory for Conservation and Utilization of Subtropical
Agro-bioresources/
PT - Journal Article
PT - Review
DEP - 20210426
PL - China (Republic : 1949- )
TA - J Integr Plant Biol
JT - Journal of integrative plant biology
JID - 101250502
SB - IM
MH - Circadian Rhythm/genetics/physiology
MH - Flowers/genetics/*physiology
MH - Gene Expression Regulation, Plant/genetics/physiology
MH - Gene Regulatory Networks/genetics/physiology
MH - *Photoperiod
MH - Plant Breeding
MH - Quantitative Trait Loci/genetics
MH - Soybeans/genetics/*physiology
OTO - NOTNLM
OT - molecular-designed breeding
OT - photoperiodic flowering
OT - soybean
EDAT- 2020/10/23 06:00
MHDA- 2021/08/05 06:00
CRDT- 2020/10/22 12:22
PHST- 2020/08/08 00:00 [received]
PHST- 2020/09/27 00:00 [accepted]
PHST- 2020/10/23 06:00 [pubmed]
PHST- 2021/08/05 06:00 [medline]
PHST- 2020/10/22 12:22 [entrez]
AID - 10.1111/jipb.13021 [doi]
PST - ppublish
SO - J Integr Plant Biol. 2021 Jun;63(6):981-994. doi: 10.1111/jipb.13021. Epub 2021
Apr 26.
##### PUB RECORD #####
## 10.1111/nph.14884 29120038 PMC5900889 Liu, Jiang et al., 2008a "Liu W, Jiang B, Ma L, Zhang S, Zhai H, Xu X, Hou W, Xia Z, Wu C, Sun S, Wu T, Chen L, Han T. Functional diversification of Flowering Locus T homologs in soybean: GmFT1a and GmFT2a/5a have opposite roles in controlling flowering and maturation. New Phytol. 2018 Feb;217(3):1335-1345. doi: 10.1111/nph.14884. Epub 2017 Nov 9. PMID: 29120038; PMCID: PMC5900889." ##
PMID- 29120038
OWN - NLM
STAT- MEDLINE
DCOM- 20191002
LR - 20200930
IS - 1469-8137 (Electronic)
IS - 0028-646X (Print)
IS - 0028-646X (Linking)
VI - 217
IP - 3
DP - 2018 Feb
TI - Functional diversification of Flowering Locus T homologs in soybean: GmFT1a and
GmFT2a/5a have opposite roles in controlling flowering and maturation.
PG - 1335-1345
LID - 10.1111/nph.14884 [doi]
AB - Soybean flowering and maturation are strictly regulated by photoperiod.
Photoperiod-sensitive soybean varieties can undergo flowering reversion when
switched from short-day (SD) to long-day (LD) conditions, suggesting the presence
of a 'floral-inhibitor' under LD conditions. We combined gene expression
profiling with a study of transgenic plants and confirmed that GmFT1a, soybean
Flowering Locus T (FT) homolog, is a floral inhibitor. GmFT1a is expressed
specifically in leaves, similar to the flowering-promoting FT homologs GmFT2a/5a.
However, in Zigongdongdou (ZGDD), a model variety for studying flowering
reversion, GmFT1a expression was induced by LD but inhibited by SD conditions.
This was unexpected, as it is the complete opposite of the expression of
flowering promoters GmFT2a/5a. Moreover, the key soybean maturity gene E1 may
up-regulate GmFT1a expression. It is also notable that GmFT1a expression was
conspicuously high in late-flowering varieties. Transgenic overexpression of
GmFT1a delayed flowering and maturation in soybean, confirming that GmFT1a
functions as a flowering inhibitor. This discovery highlights the complex impacts
of the functional diversification of the FT gene family in soybean, and implies
that antagonism between flowering-inhibiting and flowering-promoting FT homologs
in this highly photoperiod-sensitive plant may specify vegetative vs reproductive
development.
CI - (c) 2017 The Authors. New Phytologist (c) 2017 New Phytologist Trust.
FAU - Liu, Wei
AU - Liu W
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Jiang, Bingjun
AU - Jiang B
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Ma, Liming
AU - Ma L
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Zhang, Shouwei
AU - Zhang S
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Zhai, Hong
AU - Zhai H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
FAU - Xu, Xin
AU - Xu X
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Hou, Wensheng
AU - Hou W
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Xia, Zhengjun
AU - Xia Z
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
FAU - Wu, Cunxiang
AU - Wu C
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Sun, Shi
AU - Sun S
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Wu, Tingting
AU - Wu T
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Chen, Li
AU - Chen L
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
FAU - Han, Tianfu
AU - Han T
AD - MOA Key Laboratory of Soybean Biology (Beijing), Institute of Crop Science, The
Chinese Academy of Agricultural Sciences, 12 Zhongguancun South Street, Beijing,
100081, China.
LA - eng
SI - GENBANK/MG030499
SI - GENBANK/MG030623
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20171109
PL - England
TA - New Phytol
JT - The New phytologist
JID - 9882884
RN - 0 (Plant Proteins)
SB - IM
MH - Flowers/genetics/*physiology
MH - Gene Expression Regulation, Plant
MH - Haplotypes/genetics
MH - Models, Biological
MH - Phenotype
MH - Plant Proteins/*genetics/metabolism
MH - Plants, Genetically Modified
MH - *Sequence Homology, Amino Acid
MH - Soybeans/*genetics
MH - Transcriptome/genetics
PMC - PMC5900889
OTO - NOTNLM
OT - Flowering Locus T (FT) homolog
OT - GmFT1a
OT - flowering inhibitor
OT - maturation
OT - soybean
EDAT- 2017/11/10 06:00
MHDA- 2019/10/03 06:00
CRDT- 2017/11/10 06:00
PHST- 2017/05/01 00:00 [received]
PHST- 2017/10/03 00:00 [accepted]
PHST- 2017/11/10 06:00 [pubmed]
PHST- 2019/10/03 06:00 [medline]
PHST- 2017/11/10 06:00 [entrez]
AID - NPH14884 [pii]
AID - 10.1111/nph.14884 [doi]
PST - ppublish
SO - New Phytol. 2018 Feb;217(3):1335-1345. doi: 10.1111/nph.14884. Epub 2017 Nov 9.
##### PUB RECORD #####
## 10.1186/1471-2229-14-9 24397545 PMC3890618 Fan, Hu et al., 2014 "Fan C, Hu R, Zhang X, Wang X, Zhang W, Zhang Q, Ma J, Fu YF. Conserved CO-FT regulons contribute to the photoperiod flowering control in soybean. BMC Plant Biol. 2014 Jan 7;14:9. doi: 10.1186/1471-2229-14-9. PMID: 24397545; PMCID: PMC3890618." ##
PMID- 24397545
OWN - NLM
STAT- MEDLINE
DCOM- 20140910
LR - 20211021
IS - 1471-2229 (Electronic)
IS - 1471-2229 (Linking)
VI - 14
DP - 2014 Jan 7
TI - Conserved CO-FT regulons contribute to the photoperiod flowering control in
soybean.
PG - 9
LID - 10.1186/1471-2229-14-9 [doi]
AB - BACKGROUND: CO and FT orthologs, belonging to the BBX and PEBP family,
respectively, have important and conserved roles in the photoperiod regulation of
flowering time in plants. Soybean genome experienced at least three rounds of
whole genome duplications (WGDs), which resulted in multiple copies of about 75%
of genes. Subsequent subfunctionalization is the main fate for paralogous gene
pairs during the evolutionary process. RESULTS: The phylogenic relationships
revealed that CO orthologs were widespread in the plant kingdom while FT
orthologs were present only in angiosperms. Twenty-eight CO homologous genes and
twenty-four FT homologous genes were gained in the soybean genome. Based on the
collinear relationship, the soybean ancestral CO ortholog experienced three WGD
events, but only two paralogous gene pairs (GmCOL1/2 and GmCOL5/13) survived in
the modern soybean. The paralogous gene pairs, GmCOL1/2 or GmCOL5/13, showed
similar expression patterns in pair but different between pairs, indicating that
they functionally diverged. GmFTL1 to 7 were derived from the same ancestor prior
to the whole genome triplication (WGT) event, and after the Legume WGD event the
ancestor diverged into two branches, GmFTL3/5/7 and GmFTL1/2/4/6. GmFTL7 were
truncated in the N-terminus compared to other FT-lineage genes, but ubiquitously
expressed. Expressions of GmFTL1 to 6 were higher in leaves at the flowering
stage than that at the seedling stage. GmFTL3 was expressed at the highest level
in all tissues except roots at the seedling stage, and its circadian pattern was
different from the other five ones. The transcript of GmFTL6 was highly
accumulated in seedling roots. The circadian rhythms of GmCOL5/13 and
GmFT1/2/4/5/6 were synchronized in a day, demonstrating the complicate
relationship of CO-FT regulons in soybean leaves. Over-expression of GmCOL2 did
not rescue the flowering phenotype of the Arabidopsis co mutant. However, ectopic
expression of GmCOL5 did rescue the co mutant phenotype. All GmFTL1 to 6 showed
flower-promoting activities in Arabidopsis. CONCLUSIONS: After three recent
rounds of whole genome duplications in the soybean, the paralogous genes of CO-FT
regulons showed subfunctionalization through expression divergence. Then, only
GmCOL5/13 kept flowering-promoting activities, while GmFTL1 to 6 contributed to
flowering control. Additionally, GmCOL5/13 and GmFT1/2/3/4/5/6 showed similar
circadian expression profiles. Therefore, our results suggested that GmCOL5/13
and GmFT1/2/3/4/5/6 formed the complicate CO-FT regulons in the photoperiod
regulation of flowering time in soybean.
FAU - Fan, Chengming
AU - Fan C
FAU - Hu, Ruibo
AU - Hu R
FAU - Zhang, Xiaomei
AU - Zhang X
FAU - Wang, Xu
AU - Wang X
FAU - Zhang, Wenjing
AU - Zhang W
FAU - Zhang, Qingzhe
AU - Zhang Q
FAU - Ma, Jinhua
AU - Ma J
FAU - Fu, Yong-Fu
AU - Fu YF
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing
100081, China. fufu19cn@163.com.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140107
PL - England
TA - BMC Plant Biol
JT - BMC plant biology
JID - 100967807
RN - 0 (Plant Proteins)
SB - IM
MH - Circadian Rhythm/physiology
MH - Flowers/genetics/*metabolism
MH - Gene Duplication/genetics/physiology
MH - Photoperiod
MH - Phylogeny
MH - Plant Proteins/genetics/metabolism
MH - Soybeans/genetics/*metabolism
PMC - PMC3890618
EDAT- 2014/01/09 06:00
MHDA- 2014/09/11 06:00
CRDT- 2014/01/09 06:00
PHST- 2013/07/28 00:00 [received]
PHST- 2013/11/25 00:00 [accepted]
PHST- 2014/01/09 06:00 [entrez]
PHST- 2014/01/09 06:00 [pubmed]
PHST- 2014/09/11 06:00 [medline]
AID - 1471-2229-14-9 [pii]
AID - 10.1186/1471-2229-14-9 [doi]
PST - epublish
SO - BMC Plant Biol. 2014 Jan 7;14:9. doi: 10.1186/1471-2229-14-9.
##### PUB RECORD #####
## 10.1186/s12870-016-0704-9 26786479 PMC4719747 Zhao, Takeshima et al., 2016 "Zhao C, Takeshima R, Zhu J, Xu M, Sato M, Watanabe S, Kanazawa A, Liu B, Kong F, Yamada T, Abe J. A recessive allele for delayed flowering at the soybean maturity locus E9 is a leaky allele of FT2a, a FLOWERING LOCUS T ortholog. BMC Plant Biol. 2016 Jan 19;16:20. doi: 10.1186/s12870-016-0704-9. PMID: 26786479; PMCID: PMC4719747." ##
PMID- 26786479
OWN - NLM
STAT- MEDLINE
DCOM- 20160906
LR - 20220330
IS - 1471-2229 (Electronic)
IS - 1471-2229 (Linking)
VI - 16
DP - 2016 Jan 19
TI - A recessive allele for delayed flowering at the soybean maturity locus E9 is a
leaky allele of FT2a, a FLOWERING LOCUS T ortholog.
PG - 20
LID - 10.1186/s12870-016-0704-9 [doi]
LID - 20
AB - BACKGROUND: Understanding the molecular mechanisms of flowering and maturity is
important for improving the adaptability and yield of seed crops in different
environments. In soybean, a facultative short-day plant, genetic variation at
four maturity genes, E1 to E4, plays an important role in adaptation to
environments with different photoperiods. However, the molecular basis of natural
variation in time to flowering and maturity is poorly understood. Using a cross
between early-maturing soybean cultivars, we performed a genetic and molecular
study of flowering genes. The progeny of this cross segregated for two maturity
loci, E1 and E9. The latter locus was subjected to detailed molecular analysis to
identify the responsible gene. RESULTS: Fine mapping, sequencing, and expression
analysis revealed that E9 is FT2a, an ortholog of Arabidopsis FLOWERING LOCUS T.
Regardless of daylength conditions, the e9 allele was transcribed at a very low
level in comparison with the E9 allele and delayed flowering. Despite identical
coding sequences, a number of single nucleotide polymorphisms and
insertions/deletions were detected in the promoter, untranslated regions, and
introns between the two cultivars. Furthermore, the e9 allele had a
Ty1/copia-like retrotransposon, SORE-1, inserted in the first intron. Comparison
of the expression levels of different alleles among near-isogenic lines and
photoperiod-insensitive cultivars indicated that the SORE-1 insertion attenuated
FT2a expression by its allele-specific transcriptional repression. SORE-1 was
highly methylated, and did not appear to disrupt FT2a RNA processing.
CONCLUSIONS: The soybean maturity gene E9 is FT2a, and its recessive allele
delays flowering because of lower transcript abundance that is caused by
allele-specific transcriptional repression due to the insertion of SORE-1. The
FT2a transcript abundance is thus directly associated with the variation in
flowering time in soybean. The e9 allele may maintain vegetative growth in
early-flowering genetic backgrounds, and also be useful as a long-juvenile
allele, which causes late flowering under short-daylength conditions, in
low-latitude regions.
FAU - Zhao, Chen
AU - Zhao C
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. zhaochen_1112@126.com.
FAU - Takeshima, Ryoma
AU - Takeshima R
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. take-ryo@res.agr.hokudai.ac.jp.
FAU - Zhu, Jianghui
AU - Zhu J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. zhu622@res.agr.hokudai.ac.jp.
FAU - Xu, Meilan
AU - Xu M
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
xumeilan_1984@yahoo.co.jp.
FAU - Sato, Masako
AU - Sato M
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. satomasa@res.agr.hokudai.ac.jp.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - Faculty of Agriculture, Saga University, Saga, 840-0027, Japan.
nabemame@cc.saga-u.ac.jp.
FAU - Kanazawa, Akira
AU - Kanazawa A
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. kanazawa@res.agr.hokudai.ac.jp.
FAU - Liu, Baohui
AU - Liu B
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
liubh@neigaehrb.ac.cn.
FAU - Kong, Fanjiang
AU - Kong F
AD - The Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, 150081, China.
kongfj@iga.ac.cn.
FAU - Yamada, Tetsuya
AU - Yamada T
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. tetsuyay@res.agr.hokudai.ac.jp.
FAU - Abe, Jun
AU - Abe J
AD - Research Faculty of Agriculture, Hokkaido University, Sapporo, Hokkaido,
060-8589, Japan. jabe@res.agr.hokudai.ac.jp.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20160119
PL - England
TA - BMC Plant Biol
JT - BMC plant biology
JID - 100967807
SB - IM
MH - Alleles
MH - Flowers/*genetics/growth & development
MH - *Genes, Plant
MH - Genes, Recessive
MH - Soybeans/*genetics/growth & development
PMC - PMC4719747
EDAT- 2016/01/21 06:00
MHDA- 2016/09/07 06:00
CRDT- 2016/01/21 06:00
PHST- 2015/10/16 00:00 [received]
PHST- 2016/01/06 00:00 [accepted]
PHST- 2016/01/21 06:00 [entrez]
PHST- 2016/01/21 06:00 [pubmed]
PHST- 2016/09/07 06:00 [medline]
AID - 10.1186/s12870-016-0704-9 [pii]
AID - 704 [pii]
AID - 10.1186/s12870-016-0704-9 [doi]
PST - epublish
SO - BMC Plant Biol. 2016 Jan 19;16:20. doi: 10.1186/s12870-016-0704-9.
##### PUB RECORD #####
## 10.1371/journal.pone.0089030 24586488 PMC3929636 Zhai et al., 2014 "Zhai H, Lü S, Liang S, Wu H, Zhang X, Liu B, Kong F, Yuan X, Li J, Xia Z. GmFT4, a homolog of FLOWERING LOCUS T, is positively regulated by E1 and functions as a flowering repressor in soybean. PLoS One. 2014 Feb 19;9(2):e89030. doi: 10.1371/journal.pone.0089030. PMID: 24586488; PMCID: PMC3929636." ##
PMID- 24586488
OWN - NLM
STAT- MEDLINE
DCOM- 20150110
LR - 20220409
IS - 1932-6203 (Electronic)
IS - 1932-6203 (Linking)
VI - 9
IP - 2
DP - 2014
TI - GmFT4, a homolog of FLOWERING LOCUS T, is positively regulated by E1 and
functions as a flowering repressor in soybean.
PG - e89030
LID - 10.1371/journal.pone.0089030 [doi]
LID - e89030
AB - The major maturity gene E1 has the most prominent effect on flowering time and
photoperiod sensitivity of soybean, but the pathway mediated by E1 is largely
unknown. Here, we found the expression of GmFT4, a homolog of Flowering Locus T,
was strongly up-regulated in transgenic soybean overexpressing E1, whereas
expression of flowering activators, GmFT2a and GmFT5a, was suppressed. GmFT4
expression was strongly up-regulated by long days exhibiting a diurnal rhythm,
but down-regulated by short days. Notably, the basal expression level of GmFT4
was elevated when transferred to continous light, whereas repressed when
transferred to continuous dark. GmFT4 was primarily expressed in fully expanded
leaves. Transcript abundance of GmFT4 was significantly correlated with that of
functional E1, as well as flowering time phenotype in different cultivars.
Overexpression of GmFT4 delayed the flowering time in transgenic Arabidopsis.
Taken together, we propose that GmFT4 acts downstream of E1 and functions as a
flowering repressor, and the balance of two antagonistic factors (GmFT4 vs
GmFT2a/5a) determines the flowering time of soybean.
FAU - Zhai, Hong
AU - Zhai H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Lu, Shixiang
AU - Lu S
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Liang, Shuang
AU - Liang S
AD - College of Life Science, Northeast Agricultural University, Harbin, Heilongjiang,
China.
FAU - Wu, Hongyan
AU - Wu H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Zhang, Xingzheng
AU - Zhang X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Liu, Baohui
AU - Liu B
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Kong, Fanjiang
AU - Kong F
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Yuan, Xiaohui
AU - Yuan X
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
FAU - Li, Jing
AU - Li J
AD - College of Life Science, Northeast Agricultural University, Harbin, Heilongjiang,
China.
FAU - Xia, Zhengjun
AU - Xia Z
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, Chinese Academy of Sciences, Harbin, Heilongjiang,
China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140219
PL - United States
TA - PLoS One
JT - PloS one
JID - 101285081
RN - 0 (Arabidopsis Proteins)
RN - 0 (FT protein, Arabidopsis)
RN - 0 (Plant Proteins)
RN - 0 (Repressor Proteins)
RN - 0 (Transcription Factors)
SB - IM
MH - Amino Acid Sequence
MH - Arabidopsis/genetics
MH - Arabidopsis Proteins/genetics
MH - Flowers/*genetics
MH - Gene Expression Regulation, Plant
MH - Molecular Sequence Data
MH - Phylogeny
MH - Plant Proteins/*genetics
MH - Plants, Genetically Modified
MH - Repressor Proteins/*genetics
MH - Sequence Homology
MH - Soybeans/*genetics
MH - Transcription Factors/*genetics
PMC - PMC3929636
COIS- Competing Interests: The authors have declared that no competing interests exist.
EDAT- 2014/03/04 06:00
MHDA- 2015/01/13 06:00
CRDT- 2014/03/04 06:00
PHST- 2013/09/14 00:00 [received]
PHST- 2014/01/19 00:00 [accepted]
PHST- 2014/03/04 06:00 [entrez]
PHST- 2014/03/04 06:00 [pubmed]
PHST- 2015/01/13 06:00 [medline]
AID - PONE-D-13-37961 [pii]
AID - 10.1371/journal.pone.0089030 [doi]
PST - epublish
SO - PLoS One. 2014 Feb 19;9(2):e89030. doi: 10.1371/journal.pone.0089030. eCollection
2014.
##### PUB RECORD #####
## 10.1371/journal.pone.0097669 24845624 PMC4028237 Nan, Cao et al., 2014 "Nan H, Cao D, Zhang D, Li Y, Lu S, Tang L, Yuan X, Liu B, Kong F. GmFT2a and GmFT5a redundantly and differentially regulate flowering through interaction with and upregulation of the bZIP transcription factor GmFDL19 in soybean. PLoS One. 2014 May 20;9(5):e97669. doi: 10.1371/journal.pone.0097669. PMID: 24845624; PMCID: PMC4028237." ##
PMID- 24845624
OWN - NLM
STAT- MEDLINE
DCOM- 20150212
LR - 20211021
IS - 1932-6203 (Electronic)
IS - 1932-6203 (Linking)
VI - 9
IP - 5
DP - 2014
TI - GmFT2a and GmFT5a redundantly and differentially regulate flowering through
interaction with and upregulation of the bZIP transcription factor GmFDL19 in
soybean.
PG - e97669
LID - 10.1371/journal.pone.0097669 [doi]
LID - e97669
AB - FLOWERING LOCUS T (FT) is the key flowering integrator in Arabidopsis
(Arabidopsis thaliana), and its homologs encode florigens in many plant species
regardless of their photoperiodic response. Two FT homologs, GmFT2a and GmFT5a,
are involved in photoperiod-regulated flowering and coordinately control
flowering in soybean. However, the molecular and genetic understanding of the
roles played by GmFT2a and GmFT5a in photoperiod-regulated flowering in soybean
is very limited. In this study, we demonstrated that GmFT2a and GmFT5a were able
to promote early flowering in soybean by overexpressing these two genes in the
soybean cultivar Williams 82 under noninductive long-day (LD) conditions. The
soybean homologs of several floral identity genes, such as GmAP1, GmSOC1 and
GmLFY, were significantly upregulated by GmFT2a and GmFT5a in a redundant and
differential pattern. A bZIP transcription factor, GmFDL19, was identified as
interacting with both GmFT2a and GmFT5a, and this interaction was confirmed by
yeast two-hybridization and bimolecular fluorescence complementation (BiFC). The
overexpression of GmFDL19 in soybean caused early flowering, and the
transcription levels of the flowering identity genes were also upregulated by
GmFDL19, as was consistent with the upregulation of GmFT2a and GmFT5a. The
transcription of GmFDL19 was also induced by GmFT2a. The results of the
electrophoretic mobility shift assay (EMSA) indicated that GmFDL19 was able to
bind with the cis-elements in the promoter of GmAP1a. Taken together, our results
suggest that GmFT2a and GmFT5a redundantly and differentially control
photoperiod-regulated flowering in soybean through both physical interaction with
and transcriptional upregulation of the bZIP transcription factor GmFDL19,
thereby inducing the expression of floral identity genes.
FAU - Nan, Haiyang
AU - Nan H
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China;
University of Chinese Academy of Sciences, Beijing, China.
FAU - Cao, Dong
AU - Cao D
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Zhang, Dayong
AU - Zhang D
AD - Institute of Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing,
China.
FAU - Li, Ying
AU - Li Y
AD - State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry
University, Harbin, China.
FAU - Lu, Sijia
AU - Lu S
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China;
University of Chinese Academy of Sciences, Beijing, China.
FAU - Tang, Lili
AU - Tang L
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Yuan, Xiaohui
AU - Yuan X
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Liu, Baohui
AU - Liu B
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
FAU - Kong, Fanjiang
AU - Kong F
AD - The Key of Soybean Molecular Design Breeding, Northeast Institute of Geography
and Agroecology, Chinese Academy of Sciences, Nangang District, Harbin, China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140520
PL - United States
TA - PLoS One
JT - PloS one
JID - 101285081
RN - 0 (Plant Proteins)
RN - 0 (Transcription Factors)
SB - IM
MH - Flowers/genetics/*metabolism
MH - Gene Expression Regulation, Plant/*physiology
MH - Plant Proteins/genetics/*metabolism
MH - Soybeans/genetics/*metabolism
MH - Transcription Factors/genetics/*metabolism
MH - Up-Regulation/*physiology
PMC - PMC4028237
COIS- Competing Interests: The authors have declared that no competing interests exist.
EDAT- 2014/05/23 06:00
MHDA- 2015/02/13 06:00
CRDT- 2014/05/22 06:00
PHST- 2014/03/20 00:00 [received]
PHST- 2014/04/14 00:00 [accepted]
PHST- 2014/05/22 06:00 [entrez]
PHST- 2014/05/23 06:00 [pubmed]
PHST- 2015/02/13 06:00 [medline]
AID - PONE-D-14-12622 [pii]
AID - 10.1371/journal.pone.0097669 [doi]
PST - epublish
SO - PLoS One. 2014 May 20;9(5):e97669. doi: 10.1371/journal.pone.0097669. eCollection
2014.
##### PUB RECORD #####
## 10.1371/journal.pone.0136601 26371882 PMC4570765 Guo, Xu et al., 2015 "Guo G, Xu K, Zhang X, Zhu J, Lu M, Chen F, Liu L, Xi ZY, Bachmair A, Chen Q, Fu YF. Extensive Analysis of GmFTL and GmCOL Expression in Northern Soybean Cultivars in Field Conditions. PLoS One. 2015 Sep 15;10(9):e0136601. doi: 10.1371/journal.pone.0136601. PMID: 26371882; PMCID: PMC4570765." ##
PMID- 26371882
OWN - NLM
STAT- MEDLINE
DCOM- 20160519
LR - 20181113
IS - 1932-6203 (Electronic)
IS - 1932-6203 (Linking)
VI - 10
IP - 9
DP - 2015
TI - Extensive Analysis of GmFTL and GmCOL Expression in Northern Soybean Cultivars in
Field Conditions.
PG - e0136601
LID - 10.1371/journal.pone.0136601 [doi]
LID - e0136601
AB - The FLOWERING LOCUS T (FT) gene is a highly conserved florigen gene among
flowering plants. Soybean genome encodes six homologs of FT, which display
flowering activity in Arabidopsis thaliana. However, their contributions to
flowering time in different soybean cultivars, especially in field conditions,
are unclear. We employed six soybean cultivars with different maturities to
extensively investigate expression patterns of GmFTLs (Glycine max FT-like) and
GmCOLs (Glycine max CO-like) in the field conditions. The results show that
GmFTL3 is an FT homolog with the highest transcript abundance in soybean, but
other GmFTLs may also contribute to flower induction with different extents,
because they have more or less similar expression patterns in developmental-,
leaf-, and circadian-specific modes. And four GmCOL genes (GmCOL1/2/5/13) may
confer to the expression of GmFTL genes. Artificial manipulation of GmFTL
expression by transgenic strategy (overexpression and RNAi) results in a distinct
change in soybean flowering time, indicating that GmFTLs not only impact on the
control of flowering time, but have potential applications in the manipulation of
photoperiodic adaptation in soybean. Additionally, transgenic plants show that
GmFTLs play a role in formation of the first flowers and in vegetative growth.
FAU - Guo, Guangyu
AU - Guo G
AD - College of Agriculture, Northeast Agricultural University, Harbin, China.
FAU - Xu, Kun
AU - Xu K
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China; Graduate School of Chinese Academy of Agricultural Sciences, Beijing,
China.
FAU - Zhang, Xiaomei
AU - Zhang X
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Zhu, Jinlong
AU - Zhu J
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Lu, Mingyang
AU - Lu M
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China; Graduate School of Chinese Academy of Agricultural Sciences, Beijing,
China.
FAU - Chen, Fulu
AU - Chen F
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Liu, Linpo
AU - Liu L
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
FAU - Xi, Zhang-Ying
AU - Xi ZY
AD - College of Agronomy, Henan Agricultural University, Zhengzhou, China.
FAU - Bachmair, Andreas
AU - Bachmair A
AD - Dept. of Biochemistry and Cell Biology, Max F. Perutz Laboratories, University of
Vienna, Vienna Biocenter, Dr. Bohr Gasse 9, A-1030 Vienna, Austria.
FAU - Chen, Qingshan
AU - Chen Q
AD - College of Agriculture, Northeast Agricultural University, Harbin, China.
FAU - Fu, Yong-Fu
AU - Fu YF
AD - MOA Key Lab of Soybean Biology (Beijing), National Key Facility of Crop Gene
Resource and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of
Agricultural Sciences, 12 Zhongguancun Nandajie, Haidian District, Beijing,
China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20150915
PL - United States
TA - PLoS One
JT - PloS one
JID - 101285081
RN - 0 (Plant Proteins)
RN - 0 (Transcription Factors)
SB - IM
MH - Arabidopsis/genetics/metabolism
MH - Flowers/genetics/*metabolism
MH - Gene Expression Regulation, Plant/*physiology
MH - Plant Proteins/*biosynthesis/genetics
MH - Soybeans/genetics/*metabolism
MH - Transcription Factors/genetics/*metabolism
PMC - PMC4570765
COIS- Competing Interests: The authors have declared that no competing interests exist.
EDAT- 2015/09/16 06:00
MHDA- 2016/05/20 06:00
CRDT- 2015/09/16 06:00
PHST- 2015/04/28 00:00 [received]
PHST- 2015/08/06 00:00 [accepted]
PHST- 2015/09/16 06:00 [entrez]
PHST- 2015/09/16 06:00 [pubmed]
PHST- 2016/05/20 06:00 [medline]
AID - PONE-D-15-18351 [pii]
AID - 10.1371/journal.pone.0136601 [doi]
PST - epublish
SO - PLoS One. 2015 Sep 15;10(9):e0136601. doi: 10.1371/journal.pone.0136601.
eCollection 2015.
##### PUB RECORD #####
## 10.1534/genetics.108.098772 19474204 PMC2728863 Watanabe, Hideshima et al., 2009 "Watanabe S, Hideshima R, Xia Z, Tsubokura Y, Sato S, Nakamoto Y, Yamanaka N, Takahashi R, Ishimoto M, Anai T, Tabata S, Harada K. Map-based cloning of the gene associated with the soybean maturity locus E3. Genetics. 2009 Aug;182(4):1251-62. doi: 10.1534/genetics.108.098772. Epub 2009 May 27. PMID: 19474204; PMCID: PMC2728863." ##
PMID- 19474204
OWN - NLM
STAT- MEDLINE
DCOM- 20100201
LR - 20220330
IS - 1943-2631 (Electronic)
IS - 0016-6731 (Print)
IS - 0016-6731 (Linking)
VI - 182
IP - 4
DP - 2009 Aug
TI - Map-based cloning of the gene associated with the soybean maturity locus E3.
PG - 1251-62
LID - 10.1534/genetics.108.098772 [doi]
AB - Photosensitivity plays an essential role in the response of plants to their
changing environments throughout their life cycle. In soybean [Glycine max (L.)
Merrill], several associations between photosensitivity and maturity loci are
known, but only limited information at the molecular level is available. The FT3
locus is one of the quantitative trait loci (QTL) for flowering time that
corresponds to the maturity locus E3. To identify the gene responsible for this
QTL, a map-based cloning strategy was undertaken. One phytochrome A gene
(GmPhyA3) was considered a strong candidate for the FT3 locus. Allelism tests and
gene sequence comparisons showed that alleles of Misuzudaizu (FT3/FT3; JP28856)
and Harosoy (E3/E3; PI548573) were identical. The GmPhyA3 alleles of Moshidou
Gong 503 (ft3/ft3; JP27603) and L62-667 (e3/e3; PI547716) showed weak or complete
loss of function, respectively. High red/far-red (R/FR) long-day conditions
enhanced the effects of the E3/FT3 alleles in various genetic backgrounds.
Moreover, a mutant line harboring the nonfunctional GmPhyA3 flowered earlier than
the original Bay (E3/E3; PI553043) under similar conditions. These results
suggest that the variation in phytochrome A may contribute to the complex systems
of soybean flowering response and geographic adaptation.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305-8602, Japan.
FAU - Hideshima, Rumiko
AU - Hideshima R
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Tsubokura, Yasutaka
AU - Tsubokura Y
FAU - Sato, Shusei
AU - Sato S
FAU - Nakamoto, Yumi
AU - Nakamoto Y
FAU - Yamanaka, Naoki
AU - Yamanaka N
FAU - Takahashi, Ryoji
AU - Takahashi R
FAU - Ishimoto, Masao
AU - Ishimoto M
FAU - Anai, Toyoaki
AU - Anai T
FAU - Tabata, Satoshi
AU - Tabata S
FAU - Harada, Kyuya
AU - Harada K
LA - eng
SI - GENBANK/AB462634
SI - GENBANK/AB462635
SI - GENBANK/AB462636
SI - GENBANK/AB462637
SI - GENBANK/AB462638
SI - GENBANK/AB462639
SI - GENBANK/AB462640
SI - GENBANK/AB462641
SI - GENBANK/AB465249
SI - GENBANK/AB465250
SI - GENBANK/AB465251
SI - GENBANK/AB465252
SI - GENBANK/AB465253
SI - GENBANK/AB465254
SI - GENBANK/AB465255
SI - GENBANK/AB465256
SI - GENBANK/AB465257
SI - GENBANK/AB465258
SI - GENBANK/AB468152
SI - GENBANK/AB468153
SI - GENBANK/AB468154
SI - GENBANK/AB468155
SI - GENBANK/AP010916
SI - GENBANK/AP010917
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20090527
PL - United States
TA - Genetics
JT - Genetics
JID - 0374636
RN - 0 (Phytochrome A)
SB - IM
MH - Alleles
MH - Base Sequence
MH - Cloning, Molecular/*methods
MH - Flowers/genetics
MH - Genes, Plant/*genetics
MH - Molecular Sequence Data
MH - Phytochrome A/*genetics
MH - *Quantitative Trait Loci
MH - Soybeans/*genetics
PMC - PMC2728863
EDAT- 2009/05/29 09:00
MHDA- 2010/02/02 06:00
CRDT- 2009/05/29 09:00
PHST- 2009/05/29 09:00 [entrez]
PHST- 2009/05/29 09:00 [pubmed]
PHST- 2010/02/02 06:00 [medline]
AID - genetics.108.098772 [pii]
AID - gen18241251 [pii]
AID - 10.1534/genetics.108.098772 [doi]
PST - ppublish
SO - Genetics. 2009 Aug;182(4):1251-62. doi: 10.1534/genetics.108.098772. Epub 2009
May 27.
##### PUB RECORD #####
## 10.1534/genetics.110.125062 21406680 PMC3122305 Watanabe, Xia et al., 2011 "Watanabe S, Xia Z, Hideshima R, Tsubokura Y, Sato S, Yamanaka N, Takahashi R, Anai T, Tabata S, Kitamura K, Harada K. A map-based cloning strategy employing a residual heterozygous line reveals that the GIGANTEA gene is involved in soybean maturity and flowering. Genetics. 2011 Jun;188(2):395-407. doi: 10.1534/genetics.110.125062. Epub 2011 Mar 15. PMID: 21406680; PMCID: PMC3122305." ##
PMID- 21406680
OWN - NLM
STAT- MEDLINE
DCOM- 20111020
LR - 20220420
IS - 1943-2631 (Electronic)
IS - 0016-6731 (Print)
IS - 0016-6731 (Linking)
VI - 188
IP - 2
DP - 2011 Jun
TI - A map-based cloning strategy employing a residual heterozygous line reveals that
the GIGANTEA gene is involved in soybean maturity and flowering.
PG - 395-407
LID - 10.1534/genetics.110.125062 [doi]
AB - Flowering is indicative of the transition from vegetative to reproductive phase,
a critical event in the life cycle of plants. In soybean (Glycine max), a
flowering quantitative trait locus, FT2, corresponding to the maturity locus E2,
was detected in recombinant inbred lines (RILs) derived from the varieties
"Misuzudaizu" (ft2/ft2; JP28856) and "Moshidou Gong 503" (FT2/FT2; JP27603). A
map-based cloning strategy using the progeny of a residual heterozygous line
(RHL) from the RIL was employed to isolate the gene responsible for this
quantitative trait locus. A GIGANTEA ortholog, GmGIa (Glyma10g36600), was
identified as a candidate gene. A common premature stop codon at the 10th exon
was present in the Misuzudaizu allele and in other near isogenic lines (NILs)
originating from Harosoy (e2/e2; PI548573). Furthermore, a mutant line harboring
another premature stop codon showed an earlier flowering phenotype than the
original variety, Bay (E2/E2; PI553043). The e2/e2 genotype exhibited elevated
expression of GmFT2a, one of the florigen genes that leads to early flowering.
The effects of the E2 allele on flowering time were similar among NILs and
constant under high (43 degrees N) and middle (36 degrees N) latitudinal regions in Japan. These
results indicate that GmGIa is the gene responsible for the E2 locus and that a
null mutation in GmGIa may contribute to the geographic adaptation of soybean.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan.
FAU - Xia, Zhengjun
AU - Xia Z
FAU - Hideshima, Rumiko
AU - Hideshima R
FAU - Tsubokura, Yasutaka
AU - Tsubokura Y
FAU - Sato, Shusei
AU - Sato S
FAU - Yamanaka, Naoki
AU - Yamanaka N
FAU - Takahashi, Ryoji
AU - Takahashi R
FAU - Anai, Toyoaki
AU - Anai T
FAU - Tabata, Satoshi
AU - Tabata S
FAU - Kitamura, Keisuke
AU - Kitamura K
FAU - Harada, Kyuya
AU - Harada K
LA - eng
SI - GENBANK/AB554196
SI - GENBANK/AB554197
SI - GENBANK/AB554198
SI - GENBANK/AB554199
SI - GENBANK/AB554200
SI - GENBANK/AB554201
SI - GENBANK/AB554202
SI - GENBANK/AB554203
SI - GENBANK/AB554204
SI - GENBANK/AB554205
SI - GENBANK/AB554206
SI - GENBANK/AB554207
SI - GENBANK/AB554208
SI - GENBANK/AB554209
SI - GENBANK/AB554210
SI - GENBANK/AB554211
SI - GENBANK/AB554212
SI - GENBANK/AB554213
SI - GENBANK/AB554214
SI - GENBANK/AB554215
SI - GENBANK/AB554216
SI - GENBANK/AB554217
SI - GENBANK/AB554218
SI - GENBANK/AB554219
SI - GENBANK/AB554220
SI - GENBANK/AB554221
SI - GENBANK/AB554222
SI - GENBANK/AP011810
SI - GENBANK/AP011811
SI - GENBANK/AP011813
SI - GENBANK/AP011821
SI - GENBANK/AP011822
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20110315
PL - United States
TA - Genetics
JT - Genetics
JID - 0374636
RN - 0 (DNA, Plant)
RN - 0 (Plant Proteins)
RN - 0 (Soybean Proteins)
SB - IM
MH - Acclimatization/genetics
MH - Altitude
MH - Amplified Fragment Length Polymorphism Analysis
MH - Chromosome Mapping
MH - Chromosomes, Plant/genetics
MH - Cloning, Molecular/*methods
MH - DNA, Plant/chemistry/genetics
MH - Flowers/*genetics/growth & development
MH - Gene Expression Regulation, Developmental
MH - Gene Expression Regulation, Plant
MH - Heterozygote
MH - Lod Score
MH - Molecular Sequence Data
MH - Mutation
MH - Phylogeny
MH - Plant Proteins/classification/*genetics
MH - Quantitative Trait Loci/genetics
MH - Reverse Transcriptase Polymerase Chain Reaction
MH - Sequence Analysis, DNA
MH - Soybean Proteins/genetics
MH - Soybeans/*genetics/growth & development
MH - Time Factors
PMC - PMC3122305
EDAT- 2011/03/17 06:00
MHDA- 2011/10/21 06:00
CRDT- 2011/03/17 06:00
PHST- 2011/03/17 06:00 [entrez]
PHST- 2011/03/17 06:00 [pubmed]
PHST- 2011/10/21 06:00 [medline]
AID - genetics.110.125062 [pii]
AID - 125062 [pii]
AID - 10.1534/genetics.110.125062 [doi]
PST - ppublish
SO - Genetics. 2011 Jun;188(2):395-407. doi: 10.1534/genetics.110.125062. Epub 2011
Mar 15.
##### PUB RECORD #####
## 10.3389/fpls.2019.01221 31787988 PMC6856076 Wu, Kang et al., 2019 "Wu F, Kang X, Wang M, Haider W, Price WB, Hajek B, Hanzawa Y. Transcriptome-Enabled Network Inference Revealed the GmCOL1 Feed-Forward Loop and Its Roles in Photoperiodic Flowering of Soybean. Front Plant Sci. 2019 Nov 8;10:1221. doi: 10.3389/fpls.2019.01221. PMID: 31787988; PMCID: PMC6856076." ##
PMID- 31787988
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20201001
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 10
DP - 2019
TI - Transcriptome-Enabled Network Inference Revealed the GmCOL1 Feed-Forward Loop and
Its Roles in Photoperiodic Flowering of Soybean.
PG - 1221
LID - 10.3389/fpls.2019.01221 [doi]
LID - 1221
AB - Photoperiodic flowering, a plant response to seasonal photoperiod changes in the
control of reproductive transition, is an important agronomic trait that has been
a central target of crop domestication and modern breeding programs. However, our
understanding about the molecular mechanisms of photoperiodic flowering
regulation in crop species is lagging behind. To better understand the regulatory
gene networks controlling photoperiodic flowering of soybeans, we elucidated
global gene expression patterns under different photoperiod regimes using the
near isogenic lines (NILs) of maturity loci (E loci). Transcriptome signatures
identified the unique roles of the E loci in photoperiodic flowering and a set of
genes controlled by these loci. To elucidate the regulatory gene networks
underlying photoperiodic flowering regulation, we developed the network inference
algorithmic package CausNet that integrates sparse linear regression and Granger
causality heuristics, with Gaussian approximation of bootstrapping to provide
reliability scores for predicted regulatory interactions. Using the transcriptome
data, CausNet inferred regulatory interactions among soybean flowering genes.
Published reports in the literature provided empirical verification for several
of CausNet's inferred regulatory interactions. We further confirmed the inferred
regulatory roles of the flowering suppressors GmCOL1a and GmCOL1b using GmCOL1
RNAi transgenic soybean plants. Combinations of the alleles of GmCOL1 and the
major maturity locus E1 demonstrated positive interaction between these genes,
leading to enhanced suppression of flowering transition. Our work provides novel
insights and testable hypotheses in the complex molecular mechanisms of
photoperiodic flowering control in soybean and lays a framework for de novo
prediction of biological networks controlling important agronomic traits in
crops.
CI - Copyright (c) 2019 Wu, Kang, Wang, Haider, Price, Hajek and Hanzawa.
FAU - Wu, Faqiang
AU - Wu F
AD - Department of Biology, California State University, Northridge, CA, United
States.
FAU - Kang, Xiaohan
AU - Kang X
AD - Department of Electrical Computer Engineering, University of Illinois at
Urbana-Champaign, Champaign, IL, United States.
FAU - Wang, Minglei
AU - Wang M
AD - Department of Crop Sciences, University of Illinois at Urbana-Champaign,
Champaign, IL, United States.
FAU - Haider, Waseem
AU - Haider W
AD - Department of Biosciences, COMSATS University Islamabad, Pakistan.
FAU - Price, William B
AU - Price WB
AD - Department of Electrical Computer Engineering, University of Illinois at
Urbana-Champaign, Champaign, IL, United States.
FAU - Hajek, Bruce
AU - Hajek B
AD - Department of Crop Sciences, University of Illinois at Urbana-Champaign,
Champaign, IL, United States.
FAU - Hanzawa, Yoshie
AU - Hanzawa Y
AD - Department of Biology, California State University, Northridge, CA, United
States.
LA - eng
PT - Journal Article
DEP - 20191108
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC6856076
OTO - NOTNLM
OT - Glycine max
OT - feedforward loop
OT - network inference
OT - photoperiodic flowering
OT - transcriptome
EDAT- 2019/12/04 06:00
MHDA- 2019/12/04 06:01
CRDT- 2019/12/03 06:00
PHST- 2019/06/21 00:00 [received]
PHST- 2019/09/04 00:00 [accepted]
PHST- 2019/12/03 06:00 [entrez]
PHST- 2019/12/04 06:00 [pubmed]
PHST- 2019/12/04 06:01 [medline]
AID - 10.3389/fpls.2019.01221 [doi]
PST - epublish
SO - Front Plant Sci. 2019 Nov 8;10:1221. doi: 10.3389/fpls.2019.01221. eCollection
2019.
##### PUB RECORD #####
## 10.3389/fpls.2021.632754 33995435 PMC8113421 Xia, Zhai et al., 2012 "Xia Z, Zhai H, Wu H, Xu K, Watanabe S, Harada K. The Synchronized Efforts to Decipher the Molecular Basis for Soybean Maturity Loci E1, E2, and E3 That Regulate Flowering and Maturity. Front Plant Sci. 2021 Apr 28;12:632754. doi: 10.3389/fpls.2021.632754. PMID: 33995435; PMCID: PMC8113421." ##
PMID- 33995435
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20210518
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 12
DP - 2021
TI - The Synchronized Efforts to Decipher the Molecular Basis for Soybean Maturity
Loci E1, E2, and E3 That Regulate Flowering and Maturity.
PG - 632754
LID - 10.3389/fpls.2021.632754 [doi]
LID - 632754
AB - The general concept of photoperiodism, i.e., the photoperiodic induction of
flowering, was established by Garner and Allard (1920). The genetic factor
controlling flowering time, maturity, or photoperiodic responses was observed in
soybean soon after the discovery of the photoperiodism. E1, E2, and E3 were named
in 1971 and, thereafter, genetically characterized. At the centennial celebration
of the discovery of photoperiodism in soybean, we recount our endeavors to
successfully decipher the molecular bases for the major maturity loci E1, E2, and
E3 in soybean. Through systematic efforts, we successfully cloned the E3 gene in
2009, the E2 gene in 2011, and the E1 gene in 2012. Recently, successful
identification of several circadian-related genes such as PRR3a, LUX, and J has
enriched the known major E1-FTs pathway. Further research progresses on the
identification of new flowering and maturity-related genes as well as coordinated
regulation between flowering genes will enable us to understand profoundly
flowering gene network and determinants of latitudinal adaptation in soybean.
CI - Copyright (c) 2021 Xia, Zhai, Wu, Xu, Watanabe and Harada.
FAU - Xia, Zhengjun
AU - Xia Z
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Zhai, Hong
AU - Zhai H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Wu, Hongyan
AU - Wu H
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Xu, Kun
AU - Xu K
AD - Key Laboratory of Soybean Molecular Design Breeding, Northeast Institute of
Geography and Agroecology, The Innovative Academy of Seed Design, Chinese Academy
of Sciences, Harbin, China.
FAU - Watanabe, Satoshi
AU - Watanabe S
AD - Faculty of Agriculture, Saga University, Saga, Japan.
FAU - Harada, Kyuya
AU - Harada K
AD - Department of Biotechnology, Graduate School of Engineering, Osaka University,
Suita, Japan.
LA - eng
PT - Journal Article
PT - Review
DEP - 20210428
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC8113421
OTO - NOTNLM
OT - E1
OT - flowering time
OT - maturity
OT - photoperiodic response
OT - positional cloning
OT - soybean
COIS- The authors declare that the research was conducted in the absence of any
commercial or financial relationships that could be construed as a potential
conflict of interest.
EDAT- 2021/05/18 06:00
MHDA- 2021/05/18 06:01
CRDT- 2021/05/17 06:04
PHST- 2020/11/24 00:00 [received]
PHST- 2021/03/02 00:00 [accepted]
PHST- 2021/05/17 06:04 [entrez]
PHST- 2021/05/18 06:00 [pubmed]
PHST- 2021/05/18 06:01 [medline]
AID - 10.3389/fpls.2021.632754 [doi]
PST - epublish
SO - Front Plant Sci. 2021 Apr 28;12:632754. doi: 10.3389/fpls.2021.632754.
eCollection 2021.
##### PUB RECORD #####
## 10.3389/fpls.2022.889066 35574141 PMC9100572 Dietz, Chan et al., 2023 "Dietz N, Chan YO, Scaboo A, Graef G, Hyten D, Happ M, Diers B, Lorenz A, Wang D, Joshi T, Bilyeu K. Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution. Front Plant Sci. 2022 Apr 29;13:889066. doi: 10.3389/fpls.2022.889066. PMID: 35574141; PMCID: PMC9100572." ##
PMID- 35574141
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20220519
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 13
DP - 2022
TI - Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines
Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent
Latitude Distribution.
PG - 889066
LID - 10.3389/fpls.2022.889066 [doi]
LID - 889066
AB - Adaptation of soybean cultivars to the photoperiod in which they are grown is
critical for optimizing plant yield. However, despite its importance, only the
major loci conferring variation in flowering time and maturity of US soybean have
been isolated. By contrast, over 200 genes contributing to floral induction in
the model organism Arabidopsis thaliana have been described. In this work,
putative alleles of a library of soybean orthologs of these Arabidopsis flowering
genes were tested for their latitudinal distribution among elite US soybean lines
developed in the United States. Furthermore, variants comprising the alleles of
genes with significant differences in latitudinal distribution were assessed for
amino acid conservation across disparate genera to infer their impact on gene
function. From these efforts, several candidate genes from various biological
pathways were identified that are likely being exploited toward adaptation of US
soybean to various maturity groups.
CI - Copyright (c) 2022 Dietz, Chan, Scaboo, Graef, Hyten, Happ, Diers, Lorenz, Wang,
Joshi and Bilyeu.
FAU - Dietz, Nicholas
AU - Dietz N
AD - Division of Plant Science and Technology, University of Missouri, Columbia, MO,
United States.
FAU - Chan, Yen On
AU - Chan YO
AD - Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO,
United States.
AD - MU Data Science and Informatics Institute, University of Missouri, Columbia, MO,
United States.
FAU - Scaboo, Andrew
AU - Scaboo A
AD - Division of Plant Science and Technology, University of Missouri, Columbia, MO,
United States.
FAU - Graef, George
AU - Graef G
AD - Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE,
United States.
FAU - Hyten, David
AU - Hyten D
AD - Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE,
United States.
FAU - Happ, Mary
AU - Happ M
AD - Department of Agronomy and Horticulture, University of Nebraska, Lincoln, NE,
United States.
FAU - Diers, Brian
AU - Diers B
AD - Department of Crop Sciences, University of Illinois, Urbana, IL, United States.
FAU - Lorenz, Aaron
AU - Lorenz A
AD - Department of Agronomy and Plant Genetics, University of Minnesota, Saint Paul,
MN, United States.
FAU - Wang, Dechun
AU - Wang D
AD - Department of Plant, Soil and Microbial Sciences, Michigan State University, East
Lansing, MI, United States.
FAU - Joshi, Trupti
AU - Joshi T
AD - Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO,
United States.
AD - MU Data Science and Informatics Institute, University of Missouri, Columbia, MO,
United States.
AD - Department of Electrical Engineering and Computer Science, University of
Missouri, Columbia, MO, United States.
AD - Department of Health Management and Informatics, School of Medicine, University
of Missouri, Columbia, MO, United States.
FAU - Bilyeu, Kristin
AU - Bilyeu K
AD - USDA/ARS Plant Genetics Research Unit, Columbia, MO, United States.
LA - eng
PT - Journal Article
DEP - 20220429
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC9100572
OTO - NOTNLM
OT - development
OT - flowering time
OT - genomics
OT - orthologs
OT - reproductive phase
OT - soybean
OT - vegetative phase
COIS- The authors declare that the research was conducted in the absence of any
commercial or financial relationships that could be construed as a potential
conflict of interest.
EDAT- 2022/05/17 06:00
MHDA- 2022/05/17 06:01
CRDT- 2022/05/16 04:37
PHST- 2022/03/03 00:00 [received]
PHST- 2022/04/08 00:00 [accepted]
PHST- 2022/05/16 04:37 [entrez]
PHST- 2022/05/17 06:00 [pubmed]
PHST- 2022/05/17 06:01 [medline]
AID - 10.3389/fpls.2022.889066 [doi]
PST - epublish
SO - Front Plant Sci. 2022 Apr 29;13:889066. doi: 10.3389/fpls.2022.889066.
eCollection 2022.
##### PUB RECORD #####
## 10.1038/s41598-019-42332-5 30979945 PMC6461667 Chen, Fang et al., 2019 "Chen LM, Fang YS, Zhang CJ, Hao QN, Cao D, Yuan SL, Chen HF, Yang ZL, Chen SL, Shan ZH, Liu BH, Jing-Wang, Zhan Y, Zhang XJ, Qiu DZ, Li WB, Zhou XA. GmSYP24, a putative syntaxin gene, confers osmotic/drought, salt stress tolerances and ABA signal pathway. Sci Rep. 2019 Apr 12;9(1):5990. doi: 10.1038/s41598-019-42332-5. PMID: 30979945; PMCID: PMC6461667." ##
PMID- 30979945
OWN - NLM
STAT- MEDLINE
DCOM- 20201007
LR - 20210109
IS - 2045-2322 (Electronic)
IS - 2045-2322 (Linking)
VI - 9
IP - 1
DP - 2019 Apr 12
TI - GmSYP24, a putative syntaxin gene, confers osmotic/drought, salt stress
tolerances and ABA signal pathway.
PG - 5990
LID - 10.1038/s41598-019-42332-5 [doi]
LID - 5990
AB - As major environment factors, drought or high salinity affect crop growth,
development and yield. Transgenic approach is an effective way to improve abiotic
stress tolerance of crops. In this study, we comparatively analyzed gene
structures, genome location, and the evolution of syntaxin proteins containing
late embryogenesis abundant (LEA2) domain. GmSYP24 was identified as a
dehydration-responsive gene. Our study showed that the GmSYP24 protein was
located on the cell membrane. The overexpression of GmSYP24 (GmSYP24ox) in
soybean and heteroexpression of GmSYP24 (GmSYP24hx) in Arabidopsis exhibited
insensitivity to osmotic/drought and high salinity. However, wild type soybean,
Arabidopsis, and the mutant of GmSYP24 homologous gene of Arabidopsis were
sensitive to the stresses. Under the abiotic stresses, transgenic soybean plants
had greater water content and higher activities of POD, SOD compared with
non-transgenic controls. And the leaf stomatal density and opening were reduced
in transgenic Arabidopsis. The sensitivity to ABA was decreased during seed
germination of GmSYP24ox and GmSYP24hx. GmSYP24hx induced up-regulation of
ABA-responsive genes. GmSYP24ox alters the expression of some aquaporins under
osmotic/drought, salt, or ABA treatment. These results demonstrated that GmSYP24
played an important role in osmotic/drought or salt tolerance in ABA signal
pathway.
FAU - Chen, Li-Miao
AU - Chen LM
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Fang, Yi-Sheng
AU - Fang YS
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Zhang, Chan-Juan
AU - Zhang CJ
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Hao, Qing-Nan
AU - Hao QN
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Cao, Dong
AU - Cao D
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Yuan, Song-Li
AU - Yuan SL
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Chen, Hai-Feng
AU - Chen HF
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Yang, Zhong-Lu
AU - Yang ZL
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Chen, Shui-Lian
AU - Chen SL
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Shan, Zhi-Hui
AU - Shan ZH
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Liu, Bao-Hong
AU - Liu BH
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Jing-Wang
AU - Jing-Wang
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Zhan, Yong
AU - Zhan Y
AD - Crop Research Institute, Xinjiang Academy of Agricultural and Reclamation
Science, Key Lab of Cereal Quality Research and Genetic Improvement, Xinjiang
Production and Construction Crops, 832000, Shihezi, China.
FAU - Zhang, Xiao-Juan
AU - Zhang XJ
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Qiu, De-Zhen
AU - Qiu DZ
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China.
FAU - Li, Wen-Bin
AU - Li WB
AD - Key Laboratory of Soybean Biology in the Chinese Ministry of Education, Northeast
Agricultural University, Harbin, 150030, China. wenbinli@yahoo.com.
AD - Division of Soybean Breeding and Seed, Soybean Research & Development Center,
CARS (Key Laboratory of Biology and Genetics & Breeding for Soybean in Northeast
China, Ministry of Agriculture), Harbin, 150030, China. wenbinli@yahoo.com.
FAU - Zhou, Xin-An
AU - Zhou XA
AD - Key Laboratory of Oil Crop Biology, Ministry of Agriculture, Wuhan, 430062,
China. zhouocri@sina.com.
AD - Oil Crops Research Institute of Chinese Academy of Agriculture Sciences, Wuhan,
430062, China. zhouocri@sina.com.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20190412
PL - England
TA - Sci Rep
JT - Scientific reports
JID - 101563288
RN - 0 (Qa-SNARE Proteins)
RN - 72S9A8J5GW (Abscisic Acid)
SB - IM
MH - Abscisic Acid/*metabolism
MH - Arabidopsis/cytology/genetics/metabolism/physiology
MH - *Droughts
MH - *Osmosis
MH - Phylogeny
MH - Plants, Genetically Modified
MH - Qa-SNARE Proteins/*genetics
MH - Salt Tolerance/*genetics
MH - Seeds/genetics
MH - Signal Transduction/*genetics
MH - Soybeans/genetics
MH - Up-Regulation
PMC - PMC6461667
COIS- The authors declare no competing interests.
EDAT- 2019/04/14 06:00
MHDA- 2020/10/08 06:00
CRDT- 2019/04/14 06:00
PHST- 2018/08/09 00:00 [received]
PHST- 2019/03/24 00:00 [accepted]
PHST- 2019/04/14 06:00 [entrez]
PHST- 2019/04/14 06:00 [pubmed]
PHST- 2020/10/08 06:00 [medline]
AID - 10.1038/s41598-019-42332-5 [pii]
AID - 42332 [pii]
AID - 10.1038/s41598-019-42332-5 [doi]
PST - epublish
SO - Sci Rep. 2019 Apr 12;9(1):5990. doi: 10.1038/s41598-019-42332-5.
##### PUB RECORD #####
## 10.1007/s11248-019-00180-z 31673914 null Zhang, Luo, et al., 2020 "Zhang L, Luo Y, Liu B, Zhang L, Zhang W, Chen R, Wang L. Overexpression of the maize γ-tocopherol methyltransferase gene (ZmTMT) increases α-tocopherol content in transgenic Arabidopsis and maize seeds. Transgenic Res. 2020 Feb;29(1):95-104. doi: 10.1007/s11248-019-00180-z. Epub 2019 Oct 31. PMID: 31673914." ##
PMID- 31673914
OWN - NLM
STAT- MEDLINE
DCOM- 20210607
LR - 20210607
IS - 1573-9368 (Electronic)
IS - 0962-8819 (Linking)
VI - 29
IP - 1
DP - 2020 Feb
TI - Overexpression of the maize gamma-tocopherol methyltransferase gene (ZmTMT) increases
alpha-tocopherol content in transgenic Arabidopsis and maize seeds.
PG - 95-104
LID - 10.1007/s11248-019-00180-z [doi]
AB - The vitamin E family includes tocopherols and tocotrienols, which are essential
lipid-soluble antioxidants necessary for human and livestock health. The seeds of
many plant species, including maize, have high gamma (gamma)-tocopherol but low alpha
(alpha)-tocopherol contents; however, alpha-tocopherol is the most effective antioxidant.
Therefore, it is necessary to optimize the tocopherol composition in plants.
alpha-Tocopherol is synthesized from gamma-tocopherol by gamma-tocopherol methyltransferase
(gamma-TMT, VTE4) in the final step of the tocopherol biosynthetic pathway. In the
present study, the full-length coding sequence (CDS) of gamma-TMT was isolated from
Zea mays, named ZmTMT. The ZmTMT CDS was 1059 bp in size, encoding 352 amino
acids. Recombinant ZmTMT was expressed in Escherichia coli and the purified
protein effectively converted gamma-tocopherol into alpha-tocopherol in vitro. A
comparison of enzyme activities showed that the activity of ZmTMT was higher than
that of GmTMT2a (Glycine max) and AtTMT (Arabidopsis thaliana). Overexpression of
ZmTMT increased the alpha-tocopherol content 4-5-fold in transgenic Arabidopsis and
around 6.5-fold in transgenic maize kernels, and increased the alpha-/gamma-tocopherol
ratio to approximately 15 and 17, respectively. These results show that it is
feasible to overexpress ZmTMT to optimize the tocopherol composition in maize;
such a corn product might be useful in the feed industry in the near future.
FAU - Zhang, Lan
AU - Zhang L
AUID- ORCID: 0000-0001-9372-2042
AD - National Key Facility of Crop Gene Resources and Genetic Improvement,
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences,
Beijing, 100081, China.
FAU - Luo, Yanzhong
AU - Luo Y
AD - National Key Facility of Crop Gene Resources and Genetic Improvement,
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences,
Beijing, 100081, China.
FAU - Liu, Bin
AU - Liu B
AD - National Key Facility of Crop Gene Resources and Genetic Improvement,
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences,
Beijing, 100081, China.
FAU - Zhang, Liang
AU - Zhang L
AD - National Key Facility of Crop Gene Resources and Genetic Improvement,
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences,
Beijing, 100081, China.
FAU - Zhang, Wei
AU - Zhang W
AD - National Key Facility of Crop Gene Resources and Genetic Improvement,
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences,
Beijing, 100081, China.
FAU - Chen, Rumei
AU - Chen R
AD - National Key Facility of Crop Gene Resources and Genetic Improvement,
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences,
Beijing, 100081, China.
FAU - Wang, Lei
AU - Wang L
AD - National Key Facility of Crop Gene Resources and Genetic Improvement,
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences,
Beijing, 100081, China. wanglei01@caas.cn.
LA - eng
GR - 2016ZX08003-002/Earmarked Fund for China Agriculture Research
System/International
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20191031
PL - Netherlands
TA - Transgenic Res
JT - Transgenic research
JID - 9209120
RN - EC 2.1.1.- (Methyltransferases)
RN - EC 2.1.1.95 (gamma-tocopherol methyltransferase)
RN - H4N855PNZ1 (alpha-Tocopherol)
SB - IM
MH - Arabidopsis/genetics/*metabolism
MH - Methyltransferases/genetics/*metabolism
MH - Plants, Genetically Modified/genetics/*metabolism
MH - Seeds/genetics/*metabolism
MH - Zea mays/*enzymology
MH - alpha-Tocopherol/*metabolism
OTO - NOTNLM
OT - Zea mays
OT - alpha-/gamma-Tocopherol ratio
OT - alpha-Tocopherol
OT - gamma-Tocopherol methyltransferase (gamma-TMT)
EDAT- 2019/11/02 06:00
MHDA- 2021/06/08 06:00
CRDT- 2019/11/02 06:00
PHST- 2019/08/12 00:00 [received]
PHST- 2019/10/22 00:00 [accepted]
PHST- 2019/11/02 06:00 [pubmed]
PHST- 2021/06/08 06:00 [medline]
PHST- 2019/11/02 06:00 [entrez]
AID - 10.1007/s11248-019-00180-z [pii]
AID - 10.1007/s11248-019-00180-z [doi]
PST - ppublish
SO - Transgenic Res. 2020 Feb;29(1):95-104. doi: 10.1007/s11248-019-00180-z. Epub 2019
Oct 31.
##### PUB RECORD #####
## 10.1371/journal.pone.0222469 31518373 PMC6743760 Sugawara, Umehara et al., 2019 "Sugawara M, Umehara Y, Kaga A, Hayashi M, Ishimoto M, Sato S, Mitsui H, Minamisawa K. Symbiotic incompatibility between soybean and Bradyrhizobium arises from one amino acid determinant in soybean Rj2 protein. PLoS One. 2019 Sep 13;14(9):e0222469. doi: 10.1371/journal.pone.0222469. PMID: 31518373; PMCID: PMC6743760." ##
PMID- 31518373
OWN - NLM
STAT- MEDLINE
DCOM- 20200310
LR - 20200310
IS - 1932-6203 (Electronic)
IS - 1932-6203 (Linking)
VI - 14
IP - 9
DP - 2019
TI - Symbiotic incompatibility between soybean and Bradyrhizobium arises from one
amino acid determinant in soybean Rj2 protein.
PG - e0222469
LID - 10.1371/journal.pone.0222469 [doi]
LID - e0222469
AB - Cultivated soybean (Glycine max) carrying the Rj2 allele restricts nodulation
with specific Bradyrhizobium strains via host immunity, mediated by rhizobial
type III secretory protein NopP and the host resistance protein Rj2. Here we
found that the single isoleucine residue I490 in Rj2 is required for induction of
symbiotic incompatibility. Furthermore, we investigated the geographical
distribution of the Rj2-genotype soybean in a large set of germplasm by single
nucleotide polymorphism (SNP) genotyping using a SNP marker for I490. By allelic
comparison of 79 accessions in the Japanese soybean mini-core collection, we
suggest substitution of a single amino acid residue (R490 to I490) in Rj2 induces
symbiotic incompatibility with Bradyrhizobium diazoefficiens USDA 122. The
importance of I490 was verified by complementation of rj2-soybean by the dominant
allele encoding the Rj2 protein containing I490 residue. The Rj2 allele was also
found in Glycine soja, the wild progenitor of G. max, and their single amino acid
polymorphisms were associated with the Rj2-nodulation phenotype. By SNP
genotyping against 1583 soybean accessions, we detected the Rj2-genotype in 5.4%
of G. max and 7.7% of G. soja accessions. Distribution of the Rj2-genotype
soybean plants was relatively concentrated in the temperate Asian region. These
results provide important information about the mechanism of host
genotype-specific symbiotic incompatibility mediated by host immunity and suggest
that the Rj2 gene has been maintained by environmental conditions during the
process of soybean domestication.
FAU - Sugawara, Masayuki
AU - Sugawara M
AUID- ORCID: 0000-0002-3058-4348
AD - Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan.
FAU - Umehara, Yosuke
AU - Umehara Y
AD - Institute of Agrobiological Sciences, National Agriculture and Food Research
Organization, Tsukuba, Ibaraki, Japan.
FAU - Kaga, Akito
AU - Kaga A
AD - National Institute of Crop Science, National Agriculture and Food Research
Organization, Tsukuba, Ibaraki, Japan.
FAU - Hayashi, Masaki
AU - Hayashi M
AD - Institute of Agrobiological Sciences, National Agriculture and Food Research
Organization, Tsukuba, Ibaraki, Japan.
FAU - Ishimoto, Masao
AU - Ishimoto M
AD - National Institute of Crop Science, National Agriculture and Food Research
Organization, Tsukuba, Ibaraki, Japan.
FAU - Sato, Shusei
AU - Sato S
AD - Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan.
FAU - Mitsui, Hisayuki
AU - Mitsui H
AD - Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan.
FAU - Minamisawa, Kiwamu
AU - Minamisawa K
AD - Graduate School of Life Sciences, Tohoku University, Sendai, Miyagi, Japan.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20190913
PL - United States
TA - PLoS One
JT - PloS one
JID - 101285081
RN - 0 (Amino Acids)
RN - 0 (Soybean Proteins)
RN - 0 (Type III Secretion Systems)
SB - IM
MH - Alleles
MH - Amino Acids/*genetics
MH - Bradyrhizobium/*genetics
MH - Genotype
MH - Phenotype
MH - Plant Root Nodulation/genetics
MH - Plant Roots/genetics/microbiology
MH - Polymorphism, Single Nucleotide/genetics
MH - Rhizobium/genetics
MH - Soybean Proteins/*genetics
MH - Soybeans/*genetics/*microbiology
MH - Symbiosis/*genetics
MH - Type III Secretion Systems/*genetics
PMC - PMC6743760
COIS- The authors have declared that no competing interests exist.
EDAT- 2019/09/14 06:00
MHDA- 2020/03/11 06:00
CRDT- 2019/09/14 06:00
PHST- 2019/06/27 00:00 [received]
PHST- 2019/08/29 00:00 [accepted]
PHST- 2019/09/14 06:00 [entrez]
PHST- 2019/09/14 06:00 [pubmed]
PHST- 2020/03/11 06:00 [medline]
AID - PONE-D-19-18174 [pii]
AID - 10.1371/journal.pone.0222469 [doi]
PST - epublish
SO - PLoS One. 2019 Sep 13;14(9):e0222469. doi: 10.1371/journal.pone.0222469.
eCollection 2019.
##### PUB RECORD #####
## 10.1038/ncomms5340 25004933 PMC4104456 Qi, Li et al., 2014 "Qi X, Li MW, Xie M, Liu X, Ni M, Shao G, Song C, Kay-Yuen Yim A, Tao Y, Wong FL, Isobe S, Wong CF, Wong KS, Xu C, Li C, Wang Y, Guan R, Sun F, Fan G, Xiao Z, Zhou F, Phang TH, Liu X, Tong SW, Chan TF, Yiu SM, Tabata S, Wang J, Xu X, Lam HM. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun. 2014 Jul 9;5:4340. doi: 10.1038/ncomms5340. PMID: 25004933; PMCID: PMC4104456." ##
PMID- 25004933
OWN - NLM
STAT- MEDLINE
DCOM- 20151116
LR - 20220331
IS - 2041-1723 (Electronic)
IS - 2041-1723 (Linking)
VI - 5
DP - 2014 Jul 9
TI - Identification of a novel salt tolerance gene in wild soybean by whole-genome
sequencing.
PG - 4340
LID - 10.1038/ncomms5340 [doi]
LID - 4340
AB - Using a whole-genome-sequencing approach to explore germplasm resources can serve
as an important strategy for crop improvement, especially in investigating wild
accessions that may contain useful genetic resources that have been lost during
the domestication process. Here we sequence and assemble a draft genome of wild
soybean and construct a recombinant inbred population for
genotyping-by-sequencing and phenotypic analyses to identify multiple QTLs
relevant to traits of interest in agriculture. We use a combination of de novo
sequencing data from this work and our previous germplasm re-sequencing data to
identify a novel ion transporter gene, GmCHX1, and relate its sequence
alterations to salt tolerance. Rapid gain-of-function tests show the protective
effects of GmCHX1 towards salt stress. This combination of whole-genome de novo
sequencing, high-density-marker QTL mapping by re-sequencing and functional
analyses can serve as an effective strategy to unveil novel genomic information
in wild soybean to facilitate crop improvement.
FAU - Qi, Xinpeng
AU - Qi X
AD - 1] School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong [2].
FAU - Li, Man-Wah
AU - Li MW
AD - 1] School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong [2].
FAU - Xie, Min
AU - Xie M
AD - 1] BGI-Shenzhen, Shenzhen 518083, PR China [2].
FAU - Liu, Xin
AU - Liu X
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Ni, Meng
AU - Ni M
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Shao, Guihua
AU - Shao G
AD - Institute of Crop Sciences, The Chinese Academy of Agricultural Sciences, Beijing
100081, PR China.
FAU - Song, Chi
AU - Song C
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Kay-Yuen Yim, Aldrin
AU - Kay-Yuen Yim A
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Tao, Ye
AU - Tao Y
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Wong, Fuk-Ling
AU - Wong FL
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Isobe, Sachiko
AU - Isobe S
AD - Kazusa DNA Research Institute, Chiba 292-0818, Japan.
FAU - Wong, Chi-Fai
AU - Wong CF
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Wong, Kwong-Sen
AU - Wong KS
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Xu, Chunyan
AU - Xu C
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Li, Chunqing
AU - Li C
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Wang, Ying
AU - Wang Y
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Guan, Rui
AU - Guan R
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Sun, Fengming
AU - Sun F
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Fan, Guangyi
AU - Fan G
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Xiao, Zhixia
AU - Xiao Z
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Zhou, Feng
AU - Zhou F
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Phang, Tsui-Hung
AU - Phang TH
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Liu, Xuan
AU - Liu X
AD - Department of Computer Science, The University of Hong Kong, Pokfulam HKSAR, Hong
Kong.
FAU - Tong, Suk-Wah
AU - Tong SW
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Chan, Ting-Fung
AU - Chan TF
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
FAU - Yiu, Siu-Ming
AU - Yiu SM
AD - Department of Computer Science, The University of Hong Kong, Pokfulam HKSAR, Hong
Kong.
FAU - Tabata, Satoshi
AU - Tabata S
AD - Kazusa DNA Research Institute, Chiba 292-0818, Japan.
FAU - Wang, Jian
AU - Wang J
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Xu, Xun
AU - Xu X
AD - BGI-Shenzhen, Shenzhen 518083, PR China.
FAU - Lam, Hon-Ming
AU - Lam HM
AD - School of Life Sciences and Center for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin
HKSAR, Hong Kong.
LA - eng
SI - GENBANK/AZNC00000000
SI - GENBANK/KF879911
SI - GENBANK/KF879912
SI - SRA/SRR1185321
SI - SRA/SRR1185322
SI - SRA/SRR1185323
SI - SRA/SRR1185926
SI - SRA/SRR1185927
SI - SRA/SRR1185928
SI - SRA/SRR1185929
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140709
PL - England
TA - Nat Commun
JT - Nature communications
JID - 101528555
RN - 0 (Ion Pumps)
RN - 0 (Plant Proteins)
RN - 451W47IQ8X (Sodium Chloride)
SB - IM
MH - Chromosome Mapping
MH - *Genome, Plant
MH - Genotype
MH - Ion Pumps/*genetics/metabolism
MH - Molecular Sequence Data
MH - Plant Proteins/*genetics
MH - Quantitative Trait Loci
MH - *Salt Tolerance
MH - Sodium Chloride/metabolism
MH - Soybeans/*genetics/physiology
PMC - PMC4104456
EDAT- 2014/07/10 06:00
MHDA- 2015/11/17 06:00
CRDT- 2014/07/10 06:00
PHST- 2014/03/01 00:00 [received]
PHST- 2014/06/09 00:00 [accepted]
PHST- 2014/07/10 06:00 [entrez]
PHST- 2014/07/10 06:00 [pubmed]
PHST- 2015/11/17 06:00 [medline]
AID - ncomms5340 [pii]
AID - 10.1038/ncomms5340 [doi]
PST - epublish
SO - Nat Commun. 2014 Jul 9;5:4340. doi: 10.1038/ncomms5340.
##### PUB RECORD #####
## 10.1534/g3.116.038596 28235823 PMC5386870 Dobbels, Michno et al., 2017 "Dobbels AA, Michno JM, Campbell BW, Virdi KS, Stec AO, Muehlbauer GJ, Naeve SL, Stupar RM. An Induced Chromosomal Translocation in Soybean Disrupts a KASI Ortholog and Is Associated with a High-Sucrose and Low-Oil Seed Phenotype. G3 (Bethesda). 2017 Apr 3;7(4):1215-1223. doi: 10.1534/g3.116.038596. PMID: 28235823; PMCID: PMC5386870." ##
PMID- 28235823
OWN - NLM
STAT- MEDLINE
DCOM- 20180710
LR - 20181113
IS - 2160-1836 (Electronic)
IS - 2160-1836 (Linking)
VI - 7
IP - 4
DP - 2017 Apr 3
TI - An Induced Chromosomal Translocation in Soybean Disrupts a KASI Ortholog and Is
Associated with a High-Sucrose and Low-Oil Seed Phenotype.
PG - 1215-1223
LID - 10.1534/g3.116.038596 [doi]
AB - Mutagenesis is a useful tool in many crop species to induce heritable genetic
variability for trait improvement and gene discovery. In this study, forward
screening of a soybean fast neutron (FN) mutant population identified an
individual that produced seed with nearly twice the amount of sucrose (8.1% on
dry matter basis) and less than half the amount of oil (8.5% on dry matter basis)
as compared to wild type. Bulked segregant analysis (BSA), comparative genomic
hybridization, and genome resequencing were used to associate the seed
composition phenotype with a reciprocal translocation between chromosomes 8 and
13. In a backcross population, the translocation perfectly cosegregated with the
seed composition phenotype and exhibited non-Mendelian segregation patterns. We
hypothesize that the translocation is responsible for the altered seed
composition by disrupting a beta-ketoacyl-[acyl carrier protein] synthase 1 (KASI)
ortholog. KASI is a core fatty acid synthesis enzyme that is involved in the
conversion of sucrose into oil in developing seeds. This finding may lead to new
research directions for developing soybean cultivars with modified carbohydrate
and oil seed composition.
CI - Copyright (c) 2017 Dobbels et al.
FAU - Dobbels, Austin A
AU - Dobbels AA
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Michno, Jean-Michel
AU - Michno JM
AUID- ORCID: 0000-0003-3723-2246
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Campbell, Benjamin W
AU - Campbell BW
AUID- ORCID: 0000-0002-5510-8583
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Virdi, Kamaldeep S
AU - Virdi KS
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Stec, Adrian O
AU - Stec AO
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Muehlbauer, Gary J
AU - Muehlbauer GJ
AUID- ORCID: 0000-0001-9320-2629
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
AD - Department of Plant Biology, University of Minnesota, St. Paul, Minnesota 55108.
FAU - Naeve, Seth L
AU - Naeve SL
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Stupar, Robert M
AU - Stupar RM
AUID- ORCID: 0000-0002-8836-2924
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108 stup0004@umn.edu.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
PT - Research Support, U.S. Gov't, Non-P.H.S.
DEP - 20170403
PL - England
TA - G3 (Bethesda)
JT - G3 (Bethesda, Md.)
JID - 101566598
RN - 0 (Plant Proteins)
RN - 57-50-1 (Sucrose)
RN - 8001-22-7 (Soybean Oil)
SB - IM
MH - Chromosome Mapping
MH - Chromosomes, Plant/*genetics
MH - Genes, Plant
MH - Heterozygote
MH - Homozygote
MH - Mutation/genetics
MH - Phenotype
MH - Plant Proteins/*genetics
MH - Reproducibility of Results
MH - Seeds/*genetics
MH - *Sequence Homology, Nucleic Acid
MH - Soybean Oil/*metabolism
MH - Soybeans/*genetics
MH - Sucrose/*metabolism
MH - *Translocation, Genetic
PMC - PMC5386870
OTO - NOTNLM
OT - fast neutron
OT - oil
OT - soybean
OT - sucrose
OT - translocation
EDAT- 2017/02/27 06:00
MHDA- 2018/07/11 06:00
CRDT- 2017/02/26 06:00
PHST- 2017/02/27 06:00 [pubmed]
PHST- 2018/07/11 06:00 [medline]
PHST- 2017/02/26 06:00 [entrez]
AID - g3.116.038596 [pii]
AID - GGG_038596 [pii]
AID - 10.1534/g3.116.038596 [doi]
PST - epublish
SO - G3 (Bethesda). 2017 Apr 3;7(4):1215-1223. doi: 10.1534/g3.116.038596.
##### PUB RECORD #####
## 10.3389/fpls.2017.01604 28979275 PMC5611487 Manan, Ahmad et al., 2017 "Manan S, Ahmad MZ, Zhang G, Chen B, Haq BU, Yang J, Zhao J. Soybean LEC2 Regulates Subsets of Genes Involved in Controlling the Biosynthesis and Catabolism of Seed Storage Substances and Seed Development. Front Plant Sci. 2017 Sep 20;8:1604. doi: 10.3389/fpls.2017.01604. PMID: 28979275; PMCID: PMC5611487." ##
PMID- 28979275
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20220331
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 8
DP - 2017
TI - Soybean LEC2 Regulates Subsets of Genes Involved in Controlling the Biosynthesis
and Catabolism of Seed Storage Substances and Seed Development.
PG - 1604
LID - 10.3389/fpls.2017.01604 [doi]
LID - 1604
AB - Soybean is an important oilseed crop and major dietary protein resource, yet the
molecular processes and regulatory mechanisms involved in biosynthesis of seed
storage substances are not fully understood. The B3 domain transcription factor
(TF) LEC2 essentially regulates embryo development and seed maturation in other
plants, but is not functionally characterized in soybean. Here, we characterize
the function of a soybean LEC2 homolog, GmLEC2a, in regulating carbohydrate
catabolism, triacylglycerol (TAG) biosynthesis, and seed development. The
experimental analysis showed that GmLEC2a complemented Arabidopsis atlec2 mutant
defects in seedling development and TAG accumulation. Over-expression of GmLEC2a
in Arabidopsis seeds increased the TAG contents by 34% and the composition of
long chain fatty acids by 4% relative to the control seeds. Transcriptome
analysis showed that ectopic expression of GmLEC2a in soybean hairy roots
up-regulated several sets of downstream TF genes GmLEC1, GmFUS3, GmABI3, GmDof11
and GmWRI1 that regulate the seed development and production of seed storage
substances. GmLEC2a regulated the lipid transporter genes and oil body protein
gene OLEOSIN (OLE1). The genes involved in carbohydrate biosynthesis and storage,
such as sucrose synthesis, and catabolism of TAG, such as lipases in GmLEC2a
hairy roots were down-regulated. GmLEC2a targeted metabolic genes for seed
protein in soybean.
FAU - Manan, Sehrish
AU - Manan S
AD - National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural
UniversityWuhan, China.
FAU - Ahmad, Muhammad Z
AU - Ahmad MZ
AD - National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural
UniversityWuhan, China.
AD - State Key Lab of Tea Plant Biology and Utilization, College of Tea and Food
Science and Technology, Anhui Agricultural UniversityHefei, China.
FAU - Zhang, Gaoyang
AU - Zhang G
AD - National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural
UniversityWuhan, China.
AD - State Key Lab of Tea Plant Biology and Utilization, College of Tea and Food
Science and Technology, Anhui Agricultural UniversityHefei, China.
FAU - Chen, Beibei
AU - Chen B
AD - National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural
UniversityWuhan, China.
FAU - Haq, Basir U
AU - Haq BU
AD - National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural
UniversityWuhan, China.
FAU - Yang, Jihong
AU - Yang J
AD - State Key Lab of Tea Plant Biology and Utilization, College of Tea and Food
Science and Technology, Anhui Agricultural UniversityHefei, China.
FAU - Zhao, Jian
AU - Zhao J
AD - National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural
UniversityWuhan, China.
AD - State Key Lab of Tea Plant Biology and Utilization, College of Tea and Food
Science and Technology, Anhui Agricultural UniversityHefei, China.
LA - eng
PT - Journal Article
DEP - 20170920
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC5611487
OTO - NOTNLM
OT - LEAFY COTYLEDON2
OT - carbohydrate catabolism
OT - protein biosynthesis
OT - seed storage substances
OT - transcription factor
OT - triacylglycerol
EDAT- 2017/10/06 06:00
MHDA- 2017/10/06 06:01
CRDT- 2017/10/06 06:00
PHST- 2017/06/20 00:00 [received]
PHST- 2017/08/31 00:00 [accepted]
PHST- 2017/10/06 06:00 [entrez]
PHST- 2017/10/06 06:00 [pubmed]
PHST- 2017/10/06 06:01 [medline]
AID - 10.3389/fpls.2017.01604 [doi]
PST - epublish
SO - Front Plant Sci. 2017 Sep 20;8:1604. doi: 10.3389/fpls.2017.01604. eCollection
2017.
##### PUB RECORD #####
## 10.1007/s11103-013-0133-1 24072327 null RojasRodas, Rodriguez et al., 2013 "Rojas Rodas F, Rodriguez TO, Murai Y, Iwashina T, Sugawara S, Suzuki M, Nakabayashi R, Yonekura-Sakakibara K, Saito K, Kitajima J, Toda K, Takahashi R. Linkage mapping, molecular cloning and functional analysis of soybean gene Fg2 encoding flavonol 3-O-glucoside (1 → 6) rhamnosyltransferase. Plant Mol Biol. 2014 Feb;84(3):287-300. doi: 10.1007/s11103-013-0133-1. Epub 2013 Sep 27. PMID: 24072327." ##
PMID- 24072327
OWN - NLM
STAT- MEDLINE
DCOM- 20140227
LR - 20220309
IS - 1573-5028 (Electronic)
IS - 0167-4412 (Linking)
VI - 84
IP - 3
DP - 2014 Feb
TI - Linkage mapping, molecular cloning and functional analysis of soybean gene Fg2
encoding flavonol 3-O-glucoside (1 --> 6) rhamnosyltransferase.
PG - 287-300
LID - 10.1007/s11103-013-0133-1 [doi]
AB - There are substantial genotypic differences in the levels of flavonol glycosides
(FGs) in soybean leaves. The first objective of this study was to identify and
locate genes responsible for FG biosynthesis in the soybean genome. The second
objective was to clone and verify the function of these candidate genes.
Recombinant inbred lines (RILs) were developed by crossing the Kitakomachi and
Koganejiro cultivars. The FGs were separated by high performance liquid
chromatography (HPLC) and identified. The FGs of Koganejiro had rhamnose at the
6''-position of the glucose or galactose bound to the 3-position of kaempferol,
whereas FGs of Kitakomachi were devoid of rhamnose. Among the 94 RILs, 53 RILs
had HPLC peaks classified as Koganejiro type, and 41 RILs had peaks classified as
Kitakomachi type. The segregation fitted a 1:1 ratio, suggesting that a single
gene controls FG composition. SSR analysis, linkage mapping and genome database
survey revealed a candidate gene in the molecular linkage group O (chromosome
10). The coding region of the gene from Koganejiro, designated as GmF3G6''Rt-a, is
1,392 bp long and encodes 464 amino acids, whereas the gene of Kitakomachi,
GmF3G6''Rt-b, has a two-base deletion resulting in a truncated polypeptide
consisting of 314 amino acids. The recombinant GmF3G6''Rt-a protein converted
kaempferol 3-O-glucoside to kaempferol 3-O-rutinoside and utilized
3-O-glucosylated/galactosylated flavonols and UDP-rhamnose as substrates.
GmF3G6''Rt-b protein had no activity. These results indicate that GmF3G6''Rt
encodes a flavonol 3-O-glucoside (1 --> 6) rhamnosyltransferase and it probably
corresponds to the Fg2 gene. GmF3G6''Rt was designated as UGT79A6 by the UGT
Nomenclature Committee.
FAU - Rojas Rodas, Felipe
AU - Rojas Rodas F
AD - Graduate School of Life and Environmental Sciences, University of Tsukuba,
Tsukuba, Ibaraki, 305-8518, Japan.
FAU - Rodriguez, Tito O
AU - Rodriguez TO
FAU - Murai, Yoshinori
AU - Murai Y
FAU - Iwashina, Tsukasa
AU - Iwashina T
FAU - Sugawara, Satoko
AU - Sugawara S
FAU - Suzuki, Makoto
AU - Suzuki M
FAU - Nakabayashi, Ryo
AU - Nakabayashi R
FAU - Yonekura-Sakakibara, Keiko
AU - Yonekura-Sakakibara K
FAU - Saito, Kazuki
AU - Saito K
FAU - Kitajima, Junichi
AU - Kitajima J
FAU - Toda, Kyoko
AU - Toda K
FAU - Takahashi, Ryoji
AU - Takahashi R
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20130927
PL - Netherlands
TA - Plant Mol Biol
JT - Plant molecular biology
JID - 9106343
RN - 0 (DNA Primers)
RN - 0 (DNA, Complementary)
RN - 0 (Recombinant Proteins)
RN - 0 (Soybean Proteins)
RN - EC 2.4.1.- (Hexosyltransferases)
RN - EC 2.4.1.- (flavonol 3-O-glucoside (1-6) rhamnosyltransferase, soybean)
SB - IM
MH - Amino Acid Sequence
MH - Base Sequence
MH - Chromatography, High Pressure Liquid
MH - *Chromosome Mapping
MH - Cloning, Molecular
MH - DNA Primers
MH - DNA, Complementary/genetics
MH - Gene Expression Regulation, Plant
MH - *Genes, Plant
MH - Hexosyltransferases/chemistry/*genetics/isolation & purification
MH - Molecular Sequence Data
MH - Recombinant Proteins/chemistry/genetics/isolation & purification
MH - Sequence Homology, Amino Acid
MH - Soybean Proteins/chemistry/*genetics/isolation & purification
MH - Soybeans/*genetics
EDAT- 2013/09/28 06:00
MHDA- 2014/02/28 06:00
CRDT- 2013/09/28 06:00
PHST- 2013/07/10 00:00 [received]
PHST- 2013/09/17 00:00 [accepted]
PHST- 2013/09/28 06:00 [entrez]
PHST- 2013/09/28 06:00 [pubmed]
PHST- 2014/02/28 06:00 [medline]
AID - 10.1007/s11103-013-0133-1 [doi]
PST - ppublish
SO - Plant Mol Biol. 2014 Feb;84(3):287-300. doi: 10.1007/s11103-013-0133-1. Epub 2013
Sep 27.
##### PUB RECORD #####
## 10.1016/j.plantsci.2019.110298 31779909 null Bai, Jing et al., 2021 "Bai Y, Jing G, Zhou J, Li S, Bi R, Zhao J, Jia Q, Zhang Q, Zhang W. Overexpression of soybean GmPLDγ enhances seed oil content and modulates fatty acid composition in transgenic Arabidopsis. Plant Sci. 2020 Jan;290:110298. doi: 10.1016/j.plantsci.2019.110298. Epub 2019 Oct 6. Erratum in: Plant Sci. 2021 Jun;307:110881. PMID: 31779909." ##
PMID- 31779909
OWN - NLM
STAT- MEDLINE
DCOM- 20200323
LR - 20210427
IS - 1873-2259 (Electronic)
IS - 0168-9452 (Linking)
VI - 290
DP - 2020 Jan
TI - Overexpression of soybean GmPLDgamma enhances seed oil content and modulates fatty
acid composition in transgenic Arabidopsis.
PG - 110298
LID - S0168-9452(19)30840-4 [pii]
LID - 10.1016/j.plantsci.2019.110298 [doi]
AB - Phospholipase D (PLD) hydrolyzes the phosphodiester bond of glycerophospholipids
to yield phosphatidic acid (PA) and a free headgroup. PLDs are important for
plant growth, development, and responses to external stresses. However, their
roles in triacylglycerol (TAG) synthesis are still unclear. Here, we report that
a soybean (Glycine max) PLDgamma (GmPLDgamma) is involved in glycerolipid turnover and
seed oil production. GmPLDgamma was targeted to mitochondria and exhibited PLD
activity that was activated by oleate and phosphatidylinositol 4,5-bisphosphate
[PtdIns(4,5)P(2)]. Overexpression of GmPLDgamma (abbreviated GmPLDgamma-OE) in
Arabidopsis thaliana resulted in enhanced seed weight, elevated levels of TAGs
with 18-, 20-, and 22-carbon fatty acids (FAs), and altered oil-body morphology.
Furthermore, the levels of membrane lipids in vegetative tissues decreased
significantly, whereas no overt changes were found in mature seeds except for a
decrease in the digalactosyldiacylglycerol (DGDG) level in the GmPLDgamma-OE lines.
Additionally, the expression of genes involved in glycerolipid metabolism was
significantly upregulated in developing siliques in GmPLDgamma-OE lines. Together,
our data indicate a regulatory role for GmPLDgamma in TAG synthesis and fatty-acid
remodeling, highlighting the importance of mitochondria-directed
glycerophospholipid homeostasis in seed oil accumulation.
CI - Copyright (c) 2019 Elsevier B.V. All rights reserved.
FAU - Bai, Yang
AU - Bai Y
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
FAU - Jing, Guangqin
AU - Jing G
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
FAU - Zhou, Jing
AU - Zhou J
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
FAU - Li, Shuxiang
AU - Li S
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
FAU - Bi, Rongrong
AU - Bi R
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
FAU - Zhao, Jiangzhe
AU - Zhao J
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
FAU - Jia, Qianru
AU - Jia Q
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
FAU - Zhang, Qun
AU - Zhang Q
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
Electronic address: zhangqun@njau.edu.cn.
FAU - Zhang, Wenhua
AU - Zhang W
AD - College of Life Sciences, State Key Laboratory of Crop Genetics and Germplasm
Enhancement, Nanjing Agricultural University, Nanjing, 210095, PR China.
Electronic address: whzhang@njau.edu.cn.
LA - eng
PT - Journal Article
DEP - 20191006
PL - Ireland
TA - Plant Sci
JT - Plant science : an international journal of experimental plant biology
JID - 9882015
RN - 0 (Fatty Acids)
RN - 0 (Plant Oils)
RN - 0 (Plant Proteins)
RN - EC 3.1.4.4 (Phospholipase D)
SB - IM
EIN - Plant Sci. 2021 Jun;307:110881. PMID: 33902849
MH - Arabidopsis/genetics/*metabolism
MH - Fatty Acids/*metabolism
MH - *Gene Expression Regulation, Plant
MH - Phospholipase D/*genetics/metabolism
MH - Plant Oils/*metabolism
MH - Plant Proteins/*genetics/metabolism
MH - Plants, Genetically Modified/genetics/metabolism
MH - Seeds/metabolism
MH - Soybeans/*genetics/metabolism
OTO - NOTNLM
OT - Mitochondria
OT - Oil synthesis
OT - Phospholipase Dgamma
OT - Soybean
OT - Transgenic Arabidopsis
EDAT- 2019/11/30 06:00
MHDA- 2020/03/24 06:00
CRDT- 2019/11/30 06:00
PHST- 2019/06/18 00:00 [received]
PHST- 2019/09/23 00:00 [revised]
PHST- 2019/10/02 00:00 [accepted]
PHST- 2019/11/30 06:00 [entrez]
PHST- 2019/11/30 06:00 [pubmed]
PHST- 2020/03/24 06:00 [medline]
AID - S0168-9452(19)30840-4 [pii]
AID - 10.1016/j.plantsci.2019.110298 [doi]
PST - ppublish
SO - Plant Sci. 2020 Jan;290:110298. doi: 10.1016/j.plantsci.2019.110298. Epub 2019
Oct 6.
##### PUB RECORD #####
## 10.1007/s11248-013-9713-8 23645501 null Zhang, Luo et al., 2013 "Zhang L, Luo Y, Zhu Y, Zhang L, Zhang W, Chen R, Xu M, Fan Y, Wang L. GmTMT2a from soybean elevates the α-tocopherol content in corn and Arabidopsis. Transgenic Res. 2013 Oct;22(5):1021-8. doi: 10.1007/s11248-013-9713-8. Epub 2013 May 4. PMID: 23645501." ##
PMID- 23645501
OWN - NLM
STAT- MEDLINE
DCOM- 20140421
LR - 20211021
IS - 1573-9368 (Electronic)
IS - 0962-8819 (Linking)
VI - 22
IP - 5
DP - 2013 Oct
TI - GmTMT2a from soybean elevates the alpha-tocopherol content in corn and Arabidopsis.
PG - 1021-8
LID - 10.1007/s11248-013-9713-8 [doi]
AB - Tocochromanol, or vitamin E, plays a crucial role in human and animal nutrition
and is synthesized only by photosynthetic organisms. gamma-Tocopherol
methyltransferase (gamma-TMT), one of the key enzymes in the tocopherol biosynthetic
pathway in plants, converts gamma, delta-tocopherols into alpha-, beta-tocopherols. Tocopherol
content was investigated in 15 soybean cultivars and GmTMT2 was isolated from
five varieties based on tocopherol content. GmTMT2a was expressed in E. coli and
the purified protein effectively converted gamma-tocopherol into alpha-tocopherol in
vitro. Overexpression of GmTMT2a enhanced alpha-tocopherol content 4-6-fold in
transgenic Arabidopsis, and alpha-tocopherol content increased 3-4.5-fold in
transgenic maize seed, which correlated with the accumulation of GmTMT2a.
Transgenic corn that is alpha-tocopherol-rich may be beneficial for animal health and
growth.
FAU - Zhang, Lan
AU - Zhang L
AD - Biotechnology Research Institute, National Key Facility of Crop Gene Resources
and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing,
100081, China.
FAU - Luo, Yanzhong
AU - Luo Y
FAU - Zhu, Yongxing
AU - Zhu Y
FAU - Zhang, Liang
AU - Zhang L
FAU - Zhang, Wei
AU - Zhang W
FAU - Chen, Rumei
AU - Chen R
FAU - Xu, Miaoyun
AU - Xu M
FAU - Fan, Yunliu
AU - Fan Y
FAU - Wang, Lei
AU - Wang L
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20130504
PL - Netherlands
TA - Transgenic Res
JT - Transgenic research
JID - 9209120
RN - 0 (DNA Primers)
RN - EC 2.1.1.- (Methyltransferases)
RN - EC 2.1.1.95 (gamma-tocopherol methyltransferase)
RN - H4N855PNZ1 (alpha-Tocopherol)
SB - IM
MH - Arabidopsis/genetics/*metabolism
MH - Chromatography, High Pressure Liquid
MH - DNA Primers/genetics
MH - Enzyme-Linked Immunosorbent Assay
MH - Escherichia coli
MH - Methyltransferases/*genetics/metabolism
MH - Plants, Genetically Modified/genetics/*metabolism
MH - Soybeans/*genetics
MH - Zea mays/genetics/*metabolism
MH - alpha-Tocopherol/*metabolism
EDAT- 2013/05/07 06:00
MHDA- 2014/04/22 06:00
CRDT- 2013/05/07 06:00
PHST- 2012/11/09 00:00 [received]
PHST- 2013/04/25 00:00 [accepted]
PHST- 2013/05/07 06:00 [entrez]
PHST- 2013/05/07 06:00 [pubmed]
PHST- 2014/04/22 06:00 [medline]
AID - 10.1007/s11248-013-9713-8 [doi]
PST - ppublish
SO - Transgenic Res. 2013 Oct;22(5):1021-8. doi: 10.1007/s11248-013-9713-8. Epub 2013
May 4.
##### PUB RECORD #####
## 10.1016/j.yrtph.2017.01.004 28132846 null Fang, Feng, et al., 2017 "Fang J, Feng Y, Zhi Y, Zhang L, Yu Z, Jia X. A 90-day toxicity study of GmTMT transgenic maize in Sprague-Dawley rats. Regul Toxicol Pharmacol. 2017 Apr;85:48-54. doi: 10.1016/j.yrtph.2017.01.004. Epub 2017 Jan 27. PMID: 28132846." ##
PMID- 28132846
OWN - NLM
STAT- MEDLINE
DCOM- 20170327
LR - 20170327
IS - 1096-0295 (Electronic)
IS - 0273-2300 (Linking)
VI - 85
DP - 2017 Apr
TI - A 90-day toxicity study of GmTMT transgenic maize in Sprague-Dawley rats.
PG - 48-54
LID - S0273-2300(17)30004-1 [pii]
LID - 10.1016/j.yrtph.2017.01.004 [doi]
AB - GmTMT transgenic maize is a genetically modified maize plant that overexpresses
the gamma-tocopherol methyltransferase (gamma-TMT) from Glycine max (Gm). The gamma-TMT gene
was introduced into maize line Zhen58 to encode the GmTMT2a protein which can
convert gamma-tocopherol into alpha-tocopherol. Overexpression of GmTMT2a significantly
increased the alpha-tocopherol content in transgenic maize. The present study was
designed to investigate any potential effects of GmTMT maize grain in a 90-day
subchronic rodent feeding study. Maize grains from GmTMT or Zhen58 were
incorporated into rodent diets at low (12.5%), medium (25%) or high (50%)
concentrations and administered to Sprague-Dawley rats (n = 10/sex/group) for 90
days. The negative control group of rats (n = 10/sex/group) were fed with common
maize diets. Results from body weights, feed consumption, clinical chemistry,
hematology, absolute and relative organ weights indicated no treatment-related
side effects of GmTMT maize grain on rats in comparison with rats consuming diets
containing Zhen58 maize grain. In addition, no treatment-related changes were
found in necropsy and histopathology examinations. Altogether, our data indicates
that GmTMT transgenic maize is as safe and nutritious as its conventional
non-transgenic maize.
CI - Copyright (c) 2017 Elsevier Inc. All rights reserved.
FAU - Fang, Jin
AU - Fang J
AD - Key Laboratory of Food Safety Risk Assessment of Ministry of Health, National
Center for Food Safety Risk Assessment, Beijing 100021, China.
FAU - Feng, Yongquan
AU - Feng Y
AD - Key Laboratory of Food Safety Risk Assessment of Ministry of Health, National
Center for Food Safety Risk Assessment, Beijing 100021, China.
FAU - Zhi, Yuan
AU - Zhi Y
AD - Key Laboratory of Food Safety Risk Assessment of Ministry of Health, National
Center for Food Safety Risk Assessment, Beijing 100021, China.
FAU - Zhang, Lan
AU - Zhang L
AD - Biotechnology Research Institute, National Key Facility of Crop Gene Resources
and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing
100081, China.
FAU - Yu, Zhou
AU - Yu Z
AD - Key Laboratory of Food Safety Risk Assessment of Ministry of Health, National
Center for Food Safety Risk Assessment, Beijing 100021, China. Electronic
address: yuzhou310@163.com.
FAU - Jia, Xudong
AU - Jia X
AD - Key Laboratory of Food Safety Risk Assessment of Ministry of Health, National
Center for Food Safety Risk Assessment, Beijing 100021, China. Electronic
address: jiaxudong@cfsa.net.cn.
LA - eng
PT - Journal Article
DEP - 20170127
PL - Netherlands
TA - Regul Toxicol Pharmacol
JT - Regulatory toxicology and pharmacology : RTP
JID - 8214983
RN - 0 (Plant Proteins)
RN - EC 2.1.1.- (Methyltransferases)
RN - EC 2.1.1.95 (gamma-tocopherol methyltransferase)
SB - IM
MH - Animals
MH - Female
MH - Male
MH - Methyltransferases/*genetics
MH - Plant Proteins/*genetics
MH - Plants, Genetically Modified/*toxicity
MH - Rats, Sprague-Dawley
MH - Soybeans/*enzymology
MH - Toxicity Tests, Subchronic
MH - Zea mays/*genetics
OTO - NOTNLM
OT - Feeding study
OT - Rats
OT - Toxicity
OT - Transgenic maize
EDAT- 2017/01/31 06:00
MHDA- 2017/03/28 06:00
CRDT- 2017/01/31 06:00
PHST- 2016/09/21 00:00 [received]
PHST- 2017/01/22 00:00 [revised]
PHST- 2017/01/24 00:00 [accepted]
PHST- 2017/01/31 06:00 [pubmed]
PHST- 2017/03/28 06:00 [medline]
PHST- 2017/01/31 06:00 [entrez]
AID - S0273-2300(17)30004-1 [pii]
AID - 10.1016/j.yrtph.2017.01.004 [doi]
PST - ppublish
SO - Regul Toxicol Pharmacol. 2017 Apr;85:48-54. doi: 10.1016/j.yrtph.2017.01.004.
Epub 2017 Jan 27.
##### PUB RECORD #####
## 10.1038/s41467-022-34153-4 36307423 PMC9616897 Liang, Chen, et al., 2022 "Liang Q, Chen L, Yang X, Yang H, Liu S, Kou K, Fan L, Zhang Z, Duan Z, Yuan Y, Liang S, Liu Y, Lu X, Zhou G, Zhang M, Kong F, Tian Z. Natural variation of Dt2 determines branching in soybean. Nat Commun. 2022 Oct 28;13(1):6429. doi: 10.1038/s41467-022-34153-4. PMID: 36307423; PMCID: PMC9616897." ##
PMID- 36307423
OWN - NLM
STAT- MEDLINE
DCOM- 20221101
LR - 20221223
IS - 2041-1723 (Electronic)
IS - 2041-1723 (Linking)
VI - 13
IP - 1
DP - 2022 Oct 28
TI - Natural variation of Dt2 determines branching in soybean.
PG - 6429
LID - 10.1038/s41467-022-34153-4 [doi]
LID - 6429
AB - Shoot branching is fundamentally important in determining soybean yield. Here,
through genome-wide association study, we identify one predominant association
locus on chromosome 18 that confers soybean branch number in the natural
population. Further analyses determine that Dt2 is the corresponding gene and the
natural variations in Dt2 result in significant differential transcriptional
levels between the two major haplotypes. Functional characterization reveals that
Dt2 interacts with GmAgl22 and GmSoc1a to physically bind to the promoters of
GmAp1a and GmAp1d and to activate their transcription. Population genetic
investigation show that the genetic differentiation of Dt2 display significant
geographic structure. Our study provides a predominant gene for soybean branch
number and may facilitate the breeding of high-yield soybean varieties.
CI - (c) 2022. The Author(s).
FAU - Liang, Qianjin
AU - Liang Q
AUID- ORCID: 0000-0002-7925-4593
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Chen, Liyu
AU - Chen L
AD - Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design,
Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Yang, Xia
AU - Yang X
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Yang, Hui
AU - Yang H
AD - Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design,
Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Liu, Shulin
AU - Liu S
AUID- ORCID: 0000-0002-0154-2966
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Kou, Kun
AU - Kou K
AD - Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design,
Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China.
FAU - Fan, Lei
AU - Fan L
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Zhang, Zhifang
AU - Zhang Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Duan, Zongbiao
AU - Duan Z
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Yuan, Yaqin
AU - Yuan Y
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Liang, Shan
AU - Liang S
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Liu, Yucheng
AU - Liu Y
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Lu, Xingtong
AU - Lu X
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
AD - University of Chinese Academy of Sciences, Beijing, China.
FAU - Zhou, Guoan
AU - Zhou G
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Zhang, Min
AU - Zhang M
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
FAU - Kong, Fanjiang
AU - Kong F
AUID- ORCID: 0000-0001-7138-1478
AD - Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design,
Innovative Center of Molecular Genetics and Evolution, School of Life Sciences,
Guangzhou University, Guangzhou, China. kongfj@gzhu.edu.cn.
FAU - Tian, Zhixi
AU - Tian Z
AUID- ORCID: 0000-0001-6051-9670
AD - State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of
Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.
zxtian@genetics.ac.cn.
AD - University of Chinese Academy of Sciences, Beijing, China. zxtian@genetics.ac.cn.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20221028
PL - England
TA - Nat Commun
JT - Nature communications
JID - 101528555
SB - IM
MH - *Soybeans/genetics
MH - *Genome-Wide Association Study
MH - Plant Breeding
MH - Haplotypes
MH - Polymorphism, Single Nucleotide
PMC - PMC9616897
COIS- The authors declare no competing interests.
EDAT- 2022/10/29 06:00
MHDA- 2022/11/02 06:00
CRDT- 2022/10/28 23:20
PHST- 2022/05/26 00:00 [received]
PHST- 2022/10/16 00:00 [accepted]
PHST- 2022/10/29 06:00 [pubmed]
PHST- 2022/11/02 06:00 [medline]
PHST- 2022/10/28 23:20 [entrez]
AID - 10.1038/s41467-022-34153-4 [pii]
AID - 34153 [pii]
AID - 10.1038/s41467-022-34153-4 [doi]
PST - epublish
SO - Nat Commun. 2022 Oct 28;13(1):6429. doi: 10.1038/s41467-022-34153-4.
##### PUB RECORD #####
## 10.1105/tpc.114.126938 25005919 PMC4145117 Ping, Liu, et al., 2014 "Ping J, Liu Y, Sun L, Zhao M, Li Y, She M, Sui Y, Lin F, Liu X, Tang Z, Nguyen H, Tian Z, Qiu L, Nelson RL, Clemente TE, Specht JE, Ma J. Dt2 is a gain-of-function MADS-domain factor gene that specifies semideterminacy in soybean. Plant Cell. 2014 Jul;26(7):2831-42. doi: 10.1105/tpc.114.126938. Epub 2014 Jul 8. PMID: 25005919; PMCID: PMC4145117." ##
PMID- 25005919
OWN - NLM
STAT- MEDLINE
DCOM- 20150714
LR - 20211021
IS - 1532-298X (Electronic)
IS - 1040-4651 (Print)
IS - 1040-4651 (Linking)
VI - 26
IP - 7
DP - 2014 Jul
TI - Dt2 is a gain-of-function MADS-domain factor gene that specifies semideterminacy
in soybean.
PG - 2831-42
LID - 10.1105/tpc.114.126938 [doi]
AB - Similar to Arabidopsis thaliana, the wild soybeans (Glycine soja) and many
cultivars exhibit indeterminate stem growth specified by the shoot identity gene
Dt1, the functional counterpart of Arabidopsis TERMINAL FLOWER1 (TFL1). Mutations
in TFL1 and Dt1 both result in the shoot apical meristem (SAM) switching from
vegetative to reproductive state to initiate terminal flowering and thus produce
determinate stems. A second soybean gene (Dt2) regulating stem growth was
identified, which, in the presence of Dt1, produces semideterminate plants with
terminal racemes similar to those observed in determinate plants. Here, we report
positional cloning and characterization of Dt2, a dominant MADS domain factor
gene classified into the APETALA1/SQUAMOSA (AP1/SQUA) subfamily that includes
floral meristem (FM) identity genes AP1, FUL, and CAL in Arabidopsis. Unlike AP1,
whose expression is limited to FMs in which the expression of TFL1 is repressed,
Dt2 appears to repress the expression of Dt1 in the SAMs to promote early
conversion of the SAMs into reproductive inflorescences. Given that Dt2 is not
the gene most closely related to AP1 and that semideterminacy is rarely seen in
wild soybeans, Dt2 appears to be a recent gain-of-function mutation, which has
modified the genetic pathways determining the stem growth habit in soybean.
CI - (c) 2014 American Society of Plant Biologists. All rights reserved.
FAU - Ping, Jieqing
AU - Ping J
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Liu, Yunfeng
AU - Liu Y
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Sun, Lianjun
AU - Sun L
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Zhao, Meixia
AU - Zhao M
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Li, Yinghui
AU - Li Y
AD - Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing
100081, China.
FAU - She, Maoyun
AU - She M
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Sui, Yi
AU - Sui Y
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Lin, Feng
AU - Lin F
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Liu, Xiaodong
AU - Liu X
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Tang, Zongxiang
AU - Tang Z
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Nguyen, Hanh
AU - Nguyen H
AD - Department of Agronomy and Horticulture/Center for Plant Science Innovation,
University of Nebraska, Lincoln, Nebraska 68583.
FAU - Tian, Zhixi
AU - Tian Z
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907.
FAU - Qiu, Lijuan
AU - Qiu L
AD - Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing
100081, China.
FAU - Nelson, Randall L
AU - Nelson RL
AD - Soybean/Maize Germplasm, Pathology, and Genetics Research Unit, U.S. Department
of Agriculture-Agricultural Research Service, Department of Crop Sciences,
University of Illinois, Urbana, Illinois 61801.
FAU - Clemente, Thomas E
AU - Clemente TE
AD - Department of Agronomy and Horticulture/Center for Plant Science Innovation,
University of Nebraska, Lincoln, Nebraska 68583.
FAU - Specht, James E
AU - Specht JE
AD - Department of Agronomy and Horticulture/Center for Plant Science Innovation,
University of Nebraska, Lincoln, Nebraska 68583.
FAU - Ma, Jianxin
AU - Ma J
AD - Department of Agronomy, Purdue University, West Lafayette, Indiana 47907
maj@purdue.edu.
LA - eng
SI - GENBANK/KF908014
SI - GENBANK/KF908015
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
PT - Research Support, U.S. Gov't, Non-P.H.S.
DEP - 20140708
PL - England
TA - Plant Cell
JT - The Plant cell
JID - 9208688
RN - 0 (MADS Domain Proteins)
RN - 0 (Plant Proteins)
SB - IM
MH - Arabidopsis/genetics
MH - Base Sequence
MH - Chromosome Mapping
MH - Chromosomes, Plant/*genetics
MH - Flowers/genetics/growth & development
MH - Gene Expression Regulation, Developmental
MH - *Gene Expression Regulation, Plant
MH - Genetic Linkage
MH - Genetic Loci
MH - MADS Domain Proteins/*genetics/metabolism
MH - Meristem/genetics/growth & development
MH - Molecular Sequence Data
MH - Mutation
MH - Phenotype
MH - Phylogeny
MH - Plant Proteins/genetics/metabolism
MH - Plant Stems/genetics/growth & development
MH - Plants, Genetically Modified
MH - Sequence Analysis, DNA
MH - Soybeans/*genetics/growth & development
PMC - PMC4145117
EDAT- 2014/07/10 06:00
MHDA- 2015/07/15 06:00
CRDT- 2014/07/10 06:00
PHST- 2014/07/10 06:00 [entrez]
PHST- 2014/07/10 06:00 [pubmed]
PHST- 2015/07/15 06:00 [medline]
AID - tpc.114.126938 [pii]
AID - 126938 [pii]
AID - 10.1105/tpc.114.126938 [doi]
PST - ppublish
SO - Plant Cell. 2014 Jul;26(7):2831-42. doi: 10.1105/tpc.114.126938. Epub 2014 Jul 8.
##### PUB RECORD #####
## 10.1016/j.plantsci.2019.110386 32005391 null Tian, Liu et al., 2019 "Tian SN, Liu DD, Zhong CL, Xu HY, Yang S, Fang Y, Ran J, Liu JZ. Silencing GmFLS2 enhances the susceptibility of soybean to bacterial pathogen through attenuating the activation of GmMAPK signaling pathway. Plant Sci. 2020 Mar;292:110386. doi: 10.1016/j.plantsci.2019.110386. Epub 2019 Dec 24. PMID: 32005391." ##
PMID- 32005391
OWN - NLM
STAT- MEDLINE
DCOM- 20200831
LR - 20200930
IS - 1873-2259 (Electronic)
IS - 0168-9452 (Linking)
VI - 292
DP - 2020 Mar
TI - Silencing GmFLS2 enhances the susceptibility of soybean to bacterial pathogen
through attenuating the activation of GmMAPK signaling pathway.
PG - 110386
LID - S0168-9452(19)31559-6 [pii]
LID - 10.1016/j.plantsci.2019.110386 [doi]
AB - The plasma membrane (PM)-localized receptor-like kinases (RLKs) play important
roles in pathogen defense. One of the first cloned RLKs is the Arabidopsis
receptor kinase FLAGELLIN SENSING 2 (FLS2), which specifically recognizes a
conserved 22 amino acid N-terminal sequence of Pseudomonas syringae pv．tomato
DC3000 (Pst) flagellin protein (flg22). Although extensively studied in
Arabidopsis, the functions of RLKs in crop plants remain largely uninvestigated.
To understand the roles of RLKs in soybean (Glycine max), GmFLS2 was silenced via
virus induced gene silencing (VIGS) mediated by Bean pod mottle virus (BPMV). No
significant morphological differences were observed between GmFLS2-silenced
plants and the vector control plants. However, silencing GmFLS2 significantly
enhanced the susceptibility of the soybean plants to Pseudomonas syringae
pv．glycinea (Psg). Kinase activity assay showed that silencing GmFLS2
significantly reduced the phosphorylation level of GmMPK6 in response to flg22
treatment. However, reduced phosphorylation level of both GmMPK3 and GmMPK6 in
response to Psg infection was observed in GmFLS2-silenced plants, implying that
defense response is likely transduced through activation of the downstream GmMAPK
signaling pathway upon recognition of bacterial pathogen by GmFLS2. The core
peptides of flg22 from Pst and Psg were highly conserved and only 4 amino acid
differences were seen at their N-termini. Interestingly, it appeared that the
Psg-flg22 was more effective in activating soybean MAPKs than activating
Arabidopsis MAPKs, and conversely, Pst-flg22 was more effective in activating
Arabidopsis MAPKs than activating soybean MAPKs, suggesting that the cognate
recognition is more potent than heterologous recognition in activating downstream
signaling. Taken together, our results suggest that the function of FLS2 is
conserved in immunity against bacteria pathogens across different plant species.
CI - Copyright (c) 2019. Published by Elsevier B.V.
FAU - Tian, Sheng-Nan
AU - Tian SN
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China.
FAU - Liu, Dan-Dan
AU - Liu DD
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China.
FAU - Zhong, Chen-Li
AU - Zhong CL
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China.
FAU - Xu, Hui-Yang
AU - Xu HY
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China.
FAU - Yang, Shuo
AU - Yang S
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China.
FAU - Fang, Yuan
AU - Fang Y
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China.
FAU - Ran, Jie
AU - Ran J
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China.
FAU - Liu, Jian-Zhong
AU - Liu JZ
AD - College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua,
Zhejiang Province, 321004, China. Electronic address: jzliu@zjnu.cn.
LA - eng
PT - Journal Article
DEP - 20191224
PL - Ireland
TA - Plant Sci
JT - Plant science : an international journal of experimental plant biology
JID - 9882015
RN - 0 (Plant Proteins)
RN - EC 2.7.- (Protein Kinases)
RN - Bean pod mottle virus
SB - IM
MH - Comovirus
MH - *Gene Silencing
MH - Plant Diseases/*genetics/microbiology
MH - Plant Proteins/*genetics/metabolism
MH - Protein Kinases/*genetics/metabolism
MH - Pseudomonas syringae/*physiology
MH - Soybeans/*genetics/*microbiology
OTO - NOTNLM
OT - FLAGELLIN SENSING 2 (FLS2)
OT - MAPK
OT - Soybean
OT - Virus-induced gene silencing (VIGS)
OT - flg22
COIS- Declaration of Competing Interest The authors declare that they have no known
competing financial interests or personal relationships that could have appeared
to influence the work reported in this paper.
EDAT- 2020/02/02 06:00
MHDA- 2020/09/01 06:00
CRDT- 2020/02/02 06:00
PHST- 2019/10/13 00:00 [received]
PHST- 2019/12/16 00:00 [revised]
PHST- 2019/12/21 00:00 [accepted]
PHST- 2020/02/02 06:00 [entrez]
PHST- 2020/02/02 06:00 [pubmed]
PHST- 2020/09/01 06:00 [medline]
AID - S0168-9452(19)31559-6 [pii]
AID - 10.1016/j.plantsci.2019.110386 [doi]
PST - ppublish
SO - Plant Sci. 2020 Mar;292:110386. doi: 10.1016/j.plantsci.2019.110386. Epub 2019
Dec 24.
##### PUB RECORD #####
## 10.1104/pp.114.242495 24872380 PMC4081336 Wang, Shine et al., 2014 "Wang J, Shine MB, Gao QM, Navarre D, Jiang W, Liu C, Chen Q, Hu G, Kachroo A. Enhanced Disease Susceptibility1 Mediates Pathogen Resistance and Virulence Function of a Bacterial Effector in Soybean. Plant Physiol. 2014 Jul;165(3):1269-1284. doi: 10.1104/pp.114.242495. Epub 2014 May 28. PMID: 24872380; PMCID: PMC4081336." ##
PMID- 24872380
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20220331
IS - 1532-2548 (Electronic)
IS - 0032-0889 (Print)
IS - 0032-0889 (Linking)
VI - 165
IP - 3
DP - 2014 Jul
TI - Enhanced Disease Susceptibility1 Mediates Pathogen Resistance and Virulence
Function of a Bacterial Effector in Soybean.
PG - 1269-1284
AB - Enhanced disease susceptibility1 (EDS1) and phytoalexin deficient4 (PAD4) are
well-known regulators of both basal and resistance (R) protein-mediated plant
defense. We identified two EDS1-like (GmEDS1a/GmEDS1b) proteins and one PAD4-like
(GmPAD4) protein that are required for resistance signaling in soybean (Glycine
max). Consistent with their significant structural conservation to Arabidopsis
(Arabidopsis thaliana) counterparts, constitutive expression of GmEDS1 or GmPAD4
complemented the pathogen resistance defects of Arabidopsis eds1 and pad4
mutants, respectively. Interestingly, however, the GmEDS1 and GmPAD4 did not
complement pathogen-inducible salicylic acid accumulation in the eds1/pad4
mutants. Furthermore, the GmEDS1a/GmEDS1b proteins were unable to complement the
turnip crinkle virus coat protein-mediated activation of the Arabidopsis R
protein Hypersensitive reaction to Turnip crinkle virus (HRT), even though both
interacted with HRT. Silencing GmEDS1a/GmEDS1b or GmPAD4 reduced basal and
pathogen-inducible salicylic acid accumulation and enhanced soybean
susceptibility to virulent pathogens. The GmEDS1a/GmEDS1b and GmPAD4 genes were
also required for Resistance to Pseudomonas syringae pv glycinea2 (Rpg2)-mediated
resistance to Pseudomonas syringae. Notably, the GmEDS1a/GmEDS1b proteins
interacted with the cognate bacterial effector AvrA1 and were required for its
virulence function in rpg2 plants. Together, these results show that despite
significant structural similarities, conserved defense signaling components from
diverse plants can differ in their functionalities. In addition, we demonstrate a
role for GmEDS1 in regulating the virulence function of a bacterial effector.
CI - (c) 2014 American Society of Plant Biologists. All Rights Reserved.
FAU - Wang, Jialin
AU - Wang J
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.).
FAU - Shine, M B
AU - Shine MB
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.).
FAU - Gao, Qing-Ming
AU - Gao QM
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.).
FAU - Navarre, Duroy
AU - Navarre D
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.).
FAU - Jiang, Wei
AU - Jiang W
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.).
FAU - Liu, Chunyan
AU - Liu C
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.).
FAU - Chen, Qingshan
AU - Chen Q
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.).
FAU - Hu, Guohua
AU - Hu G
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.) apkach2@uky.edu
hugh757@vip.163.com.
FAU - Kachroo, Aardra
AU - Kachroo A
AD - College of Agriculture, Northeast Agricultural University, Harbin 150030, China
(J.W., W.J., Q.C., G.H.);Department of Plant Pathology, University of Kentucky,
Lexington, Kentucky 40546 (J.W., M.B.S., Q.-M.G., A.K.);United States Department
of Agriculture-Agricultural Research Service, Washington State University,
Prosser, Washington 99350 (D.N.); andLand Reclamation Research and Breeding
Centre of Heilongjiang, Harbin 150090, China (C.L., G.H.) apkach2@uky.edu
hugh757@vip.163.com.
LA - eng
PT - Journal Article
DEP - 20140528
PL - United States
TA - Plant Physiol
JT - Plant physiology
JID - 0401224
PMC - PMC4081336
EDAT- 2014/05/30 06:00
MHDA- 2014/05/30 06:01
CRDT- 2014/05/30 06:00
PHST- 2014/05/30 06:00 [entrez]
PHST- 2014/05/30 06:00 [pubmed]
PHST- 2014/05/30 06:01 [medline]
AID - pp.114.242495 [pii]
AID - 242495 [pii]
AID - 10.1104/pp.114.242495 [doi]
PST - ppublish
SO - Plant Physiol. 2014 Jul;165(3):1269-1284. doi: 10.1104/pp.114.242495. Epub 2014
May 28.
##### PUB RECORD #####
## 10.1016/j.pbi.2005.05.010 15939664 null Weirmer, Feys et al., 2005 "Wiermer M, Feys BJ, Parker JE. Plant immunity: the EDS1 regulatory node. Curr Opin Plant Biol. 2005 Aug;8(4):383-9. doi: 10.1016/j.pbi.2005.05.010. PMID: 15939664." ##
PMID- 15939664
OWN - NLM
STAT- MEDLINE
DCOM- 20050817
LR - 20220317
IS - 1369-5266 (Print)
IS - 1369-5266 (Linking)
VI - 8
IP - 4
DP - 2005 Aug
TI - Plant immunity: the EDS1 regulatory node.
PG - 383-9
AB - ENHANCED DISEASE SUSCEPTIBILITY 1 (EDS1) and its interacting partner, PHYTOALEXIN
DEFICIENT 4 (PAD4), constitute a regulatory hub that is essential for basal
resistance to invasive biotrophic and hemi-biotrophic pathogens. EDS1 and PAD4
are also recruited by Toll-Interleukin-1 receptor (TIR)-type nucleotide
binding-leucine rich repeat (NB-LRR) proteins to signal isolate-specific pathogen
recognition. Recent work points to a fundamental role of EDS1 and PAD4 in
transducing redox signals in response to certain biotic and abiotic stresses.
These intracellular proteins are important activators of salicylic acid (SA)
signaling and also mediate antagonism between the jasmonic acid (JA) and ethylene
(ET) defense response pathways. EDS1 forms several molecularly and spatially
distinct complexes with PAD4 and a newly discovered in vivo signaling partner,
SENESCENCE ASSOCIATED GENE 101 (SAG101). Together, EDS1, PAD4 and SAG101 provide
a major barrier to infection by both host-adapted and non-host pathogens.
FAU - Wiermer, Marcel
AU - Wiermer M
AD - Max Planck Institute for Plant Breeding Research, Department of Plant-Microbe
Interactions, Carl-von-Linne-Weg 10, D-50829 Cologne, Germany.
FAU - Feys, Bart J
AU - Feys BJ
FAU - Parker, Jane E
AU - Parker JE
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
PT - Review
PL - England
TA - Curr Opin Plant Biol
JT - Current opinion in plant biology
JID - 100883395
RN - 0 (Arabidopsis Proteins)
RN - 0 (DNA-Binding Proteins)
RN - 0 (EDS1 protein, Arabidopsis)
RN - EC 3.1.1.- (Carboxylic Ester Hydrolases)
RN - EC 3.1.1.- (PAD4 protein, Arabidopsis)
SB - IM
MH - Arabidopsis/*immunology/metabolism
MH - Arabidopsis Proteins/metabolism/*physiology
MH - Carboxylic Ester Hydrolases/metabolism/*physiology
MH - DNA-Binding Proteins/metabolism/*physiology
MH - Gene Expression Regulation, Plant
MH - Oxidative Stress
MH - *Plant Diseases
MH - Signal Transduction
RF - 45
EDAT- 2005/06/09 09:00
MHDA- 2005/08/18 09:00
CRDT- 2005/06/09 09:00
PHST- 2005/04/18 00:00 [received]
PHST- 2005/05/19 00:00 [accepted]
PHST- 2005/06/09 09:00 [pubmed]
PHST- 2005/08/18 09:00 [medline]
PHST- 2005/06/09 09:00 [entrez]
AID - S1369-5266(05)00071-3 [pii]
AID - 10.1016/j.pbi.2005.05.010 [doi]
PST - ppublish
SO - Curr Opin Plant Biol. 2005 Aug;8(4):383-9. doi: 10.1016/j.pbi.2005.05.010.
##### PUB RECORD #####
## 10.3389/fpls.2021.629069 33841461 PMC8029582 Yang, Zhang et al., 2021 "Yang X, Zhang Y, Shan J, Sun J, Li D, Zhang X, Li W, Zhao L. GmIDD Is Induced by Short Days in Soybean and May Accelerate Flowering When Overexpressed in Arabidopsis via Inhibiting AGAMOUS-LIKE 18. Front Plant Sci. 2021 Feb 26;12:629069. doi: 10.3389/fpls.2021.629069. PMID: 33841461; PMCID: PMC8029582." ##
PMID- 33841461
OWN - NLM
STAT- PubMed-not-MEDLINE
LR - 20210413
IS - 1664-462X (Print)
IS - 1664-462X (Electronic)
IS - 1664-462X (Linking)
VI - 12
DP - 2021
TI - GmIDD Is Induced by Short Days in Soybean and May Accelerate Flowering When
Overexpressed in Arabidopsis via Inhibiting AGAMOUS-LIKE 18.
PG - 629069
LID - 10.3389/fpls.2021.629069 [doi]
LID - 629069
AB - Photoperiod is one of the main climatic factors that determine flowering time and
yield. Some members of the INDETERMINATE DOMAIN (IDD) transcription factor family
have been reported to be involved in regulation of flowering time in Arabidopsis,
maize, and rice. In this study, the domain analysis showed that GmIDD had a
typical ID domain and was a member of the soybean IDD transcription factor
family. Quantitative real-time PCR analysis showed that GmIDD was induced by
short day conditions in leaves and regulated by circadian clock. Under long day
conditions, transgenic Arabidopsis overexpressing GmIDD flowered earlier than
wild-type, and idd mutants flowered later, while the overexpression of GmIDD
rescued the late-flowering phenotype of idd mutants. Chromatin
immunoprecipitation sequencing assays of GmIDD binding sites in
GmIDD-overexpression (GmIDD-ox) Arabidopsis further identified potential direct
targets, including a transcription factor, AGAMOUS-like 18 (AGL18). GmIDD might
inhibit the transcriptional activity of flower repressor AGL18 by binding to the
TTTTGGTCC motif of AGL18 promoter. Furthermore, the results also showed that
GmIDD overexpression increased the transcription levels of flowering time-related
genes FLOWERING LOCUS T (FT), SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 (SOC1),
LEAFY (LFY) and APETALA1 (AP1) in Arabidopsis. Taken together, GmIDD appeared to
inhibit the transcriptional activity of AGL18 and induced the expression of FT
gene to promote Arabidopsis flowering.
CI - Copyright (c) 2021 Yang, Zhang, Shan, Sun, Li, Zhang, Li and Zhao.
FAU - Yang, Xue
AU - Yang X
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
FAU - Zhang, Yuntong
AU - Zhang Y
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
FAU - Shan, Jinming
AU - Shan J
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
FAU - Sun, Jingzhe
AU - Sun J
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
FAU - Li, Dongmei
AU - Li D
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
FAU - Zhang, Xiaoming
AU - Zhang X
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
FAU - Li, Wenbin
AU - Li W
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
FAU - Zhao, Lin
AU - Zhao L
AD - Key Laboratory of Soybean Biology of Ministry of Education, China (Key Laboratory
of Biology and Genetics and Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, China.
LA - eng
PT - Journal Article
DEP - 20210226
PL - Switzerland
TA - Front Plant Sci
JT - Frontiers in plant science
JID - 101568200
PMC - PMC8029582
OTO - NOTNLM
OT - AGL18
OT - GmIDD
OT - flowering
OT - photoperiod
OT - soybean
COIS- The authors declare that the research was conducted in the absence of any
commercial or financial relationships that could be construed as a potential
conflict of interest.
EDAT- 2021/04/13 06:00
MHDA- 2021/04/13 06:01
CRDT- 2021/04/12 06:17
PHST- 2020/12/07 00:00 [received]
PHST- 2021/01/22 00:00 [accepted]
PHST- 2021/04/12 06:17 [entrez]
PHST- 2021/04/13 06:00 [pubmed]
PHST- 2021/04/13 06:01 [medline]
AID - 10.3389/fpls.2021.629069 [doi]
PST - epublish
SO - Front Plant Sci. 2021 Feb 26;12:629069. doi: 10.3389/fpls.2021.629069.
eCollection 2021.
##### PUB RECORD #####
## 10.1534/g3.114.015255 25452420 PMC4291463 Campbell, Mani et al., 2014 "Campbell BW, Mani D, Curtin SJ, Slattery RA, Michno JM, Ort DR, Schaus PJ, Palmer RG, Orf JH, Stupar RM. Identical substitutions in magnesium chelatase paralogs result in chlorophyll-deficient soybean mutants. G3 (Bethesda). 2014 Dec 1;5(1):123-31. doi: 10.1534/g3.114.015255. PMID: 25452420; PMCID: PMC4291463." ##
PMID- 25452420
OWN - NLM
STAT- MEDLINE
DCOM- 20150917
LR - 20220408
IS - 2160-1836 (Electronic)
IS - 2160-1836 (Linking)
VI - 5
IP - 1
DP - 2014 Dec 1
TI - Identical substitutions in magnesium chelatase paralogs result in
chlorophyll-deficient soybean mutants.
PG - 123-31
LID - 10.1534/g3.114.015255 [doi]
AB - The soybean [Glycine max (L.) Merr.] chlorophyll-deficient line MinnGold is a
spontaneous mutant characterized by yellow foliage. Map-based cloning and
transgenic complementation revealed that the mutant phenotype is caused by a
nonsynonymous nucleotide substitution in the third exon of a Mg-chelatase subunit
gene (ChlI1a) on chromosome 13. This gene was selected as a candidate for a
different yellow foliage mutant, T219H (Y11y11), that had been previously mapped
to chromosome 13. Although the phenotypes of MinnGold and T219H are clearly
distinct, sequencing of ChlI1a in T219H identified a different nonsynonymous
mutation in the third exon, only six base pairs from the MinnGold mutation. This
information, along with previously published allelic tests, were used to identify
and clone a third yellow foliage mutation, CD-5, which was previously mapped to
chromosome 15. This mutation was identified in the ChlI1b gene, a paralog of
ChlI1a. Sequencing of the ChlI1b allele in CD-5 identified a nonsynonymous
substitution in the third exon that confers an identical amino acid change as the
T219H substitution at ChlI1a. Protein sequence alignments of the two Mg-chelatase
subunits indicated that the sites of amino acid modification in MinnGold, T219H,
and CD-5 are highly conserved among photosynthetic species. These results suggest
that amino acid alterations in this critical domain may create competitive
inhibitory interactions between the mutant and wild-type ChlI1a and ChlI1b
proteins.
CI - Copyright (c) 2015 Campbell et al.
FAU - Campbell, Benjamin W
AU - Campbell BW
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Mani, Dhananjay
AU - Mani D
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Curtin, Shaun J
AU - Curtin SJ
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Slattery, Rebecca A
AU - Slattery RA
AD - Department of Plant Biology, University of Illinois, Urbana, Illinois 61801.
FAU - Michno, Jean-Michel
AU - Michno JM
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Ort, Donald R
AU - Ort DR
AD - Department of Plant Biology, University of Illinois, Urbana, Illinois 61801 US
Department of Agriculture/Agricultural Research Service, Global Change and
Photosynthesis Research Unit, Urbana, Illinois 61801.
FAU - Schaus, Philip J
AU - Schaus PJ
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Palmer, Reid G
AU - Palmer RG
AD - Department of Agronomy, Iowa State University, Ames, Iowa 50011.
FAU - Orf, James H
AU - Orf JH
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108.
FAU - Stupar, Robert M
AU - Stupar RM
AD - Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul,
Minnesota 55108 rstupar@umn.edu.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20141201
PL - England
TA - G3 (Bethesda)
JT - G3 (Bethesda, Md.)
JID - 101566598
RN - 0 (Protein Subunits)
RN - 1406-65-1 (Chlorophyll)
RN - EC 4.- (Lyases)
RN - EC 4.99.1- (magnesium chelatase)
SB - IM
MH - Amino Acid Sequence
MH - Chlorophyll/*deficiency
MH - Lyases/*genetics
MH - Mutation
MH - Plant Leaves
MH - Protein Subunits/genetics
MH - Soybeans/*genetics
PMC - PMC4291463
OTO - NOTNLM
OT - chlorophyll
OT - duplication
OT - paralog
OT - photosynthesis
OT - soybean
EDAT- 2014/12/03 06:00
MHDA- 2015/09/18 06:00
CRDT- 2014/12/03 06:00
PHST- 2014/12/03 06:00 [entrez]
PHST- 2014/12/03 06:00 [pubmed]
PHST- 2015/09/18 06:00 [medline]
AID - g3.114.015255 [pii]
AID - GGG_015255 [pii]
AID - 10.1534/g3.114.015255 [doi]
PST - epublish
SO - G3 (Bethesda). 2014 Dec 1;5(1):123-31. doi: 10.1534/g3.114.015255.
##### PUB RECORD #####
## 10.1186/1471-2229-14-154 24893844 PMC4074861 Zhou, He et al., 2014 "Zhou L, He H, Liu R, Han Q, Shou H, Liu B. Overexpression of GmAKT2 potassium channel enhances resistance to soybean mosaic virus. BMC Plant Biol. 2014 Jun 3;14:154. doi: 10.1186/1471-2229-14-154. PMID: 24893844; PMCID: PMC4074861." ##
PMID- 24893844
OWN - NLM
STAT- MEDLINE
DCOM- 20150116
LR - 20220331
IS - 1471-2229 (Electronic)
IS - 1471-2229 (Linking)
VI - 14
DP - 2014 Jun 3
TI - Overexpression of GmAKT2 potassium channel enhances resistance to soybean mosaic
virus.
PG - 154
LID - 10.1186/1471-2229-14-154 [doi]
AB - BACKGROUND: Soybean mosaic virus (SMV) is the most prevalent viral disease in
many soybean production areas. Due to a large number of SMV resistant loci and
alleles, SMV strains and the rapid evolution in avirulence/effector genes,
traditional breeding for SMV resistance is complex. Genetic engineering is an
effective alternative method for improving SMV resistance in soybean. Potassium
(K+) is the most abundant inorganic solute in plant cells, and is involved in
plant responses to abiotic and biotic stresses. Studies have shown that altering
the level of K+ status can reduce the spread of the viral diseases. Thus K+
transporters are putative candidates to target for soybean virus resistance.
RESULTS: The addition of K+ fertilizer significantly reduced SMV incidence.
Analysis of K+ channel gene expression indicated that GmAKT2, the ortholog of
Arabidopsis K+ weak channel encoding gene AKT2, was significantly induced by SMV
inoculation in the SMV highly-resistant genotype Rsmv1, but not in the
susceptible genotype Ssmv1. Transgenic soybean plants overexpressing GmAKT2 were
produced and verified by Southern blot and RT-PCR analysis. Analysis of K+
concentrations on different leaves of both the transgenic and the wildtype
(Williams 82) plants revealed that overexpression of GmAKT2 significantly
increased K+ concentrations in young leaves of plants. In contrast, K+
concentrations in the old leaves of the GmAKT2-Oe plants were significantly lower
than those in WT plants. These results indicated that GmAKT2 acted as a K+
transporter and affected the distribution of K+ in soybean plants. Starting from
14 days after inoculation (DAI) of SMV G7, severe mosaic symptoms were observed
on the WT leaves. In contrast, the GmAKT2-Oe plants showed no symptom of SMV
infection. At 14 and 28 DAI, the amount of SMV RNA in WT plants increased 200-
and 260- fold relative to GmAKT2-Oe plants at each time point. Thus, SMV
development was significantly retarded in GmAKT2-overexpressing transgenic
soybean plants. CONCLUSIONS: Overexpression of GmAKT2 significantly enhanced SMV
resistance in transgenic soybean. Thus, alteration of K+ transporter expression
is a novel molecular approach for enhancing SMV resistance in soybean.
FAU - Zhou, Lian
AU - Zhou L
FAU - He, Hongli
AU - He H
FAU - Liu, Ruifang
AU - Liu R
FAU - Han, Qiang
AU - Han Q
FAU - Shou, Huixia
AU - Shou H
AD - State Key Laboratory of Plant Physiology and Biochemistry, College of Life
Sciences, Zhejiang University, Hangzhou 310058, P, R, China. huixia@zju.edu.cn.
FAU - Liu, Bao
AU - Liu B
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20140603
PL - England
TA - BMC Plant Biol
JT - BMC plant biology
JID - 100967807
RN - 0 (Plant Proteins)
RN - 0 (Potassium Channels)
RN - RWP5GA015D (Potassium)
SB - IM
MH - *Disease Resistance/drug effects/genetics
MH - Gene Expression Regulation, Plant/drug effects
MH - Genotype
MH - Mosaic Viruses/drug effects/*physiology
MH - Plant Diseases/genetics/*virology
MH - Plant Leaves/drug effects/metabolism
MH - Plant Proteins/genetics/*metabolism
MH - Plants, Genetically Modified
MH - Potassium/metabolism/pharmacology
MH - Potassium Channels/genetics/*metabolism
MH - Reproducibility of Results
MH - Soybeans/drug effects/genetics/growth & development/*virology
PMC - PMC4074861
EDAT- 2014/06/05 06:00
MHDA- 2015/01/17 06:00
CRDT- 2014/06/05 06:00
PHST- 2014/02/25 00:00 [received]
PHST- 2014/05/27 00:00 [accepted]
PHST- 2014/06/05 06:00 [entrez]
PHST- 2014/06/05 06:00 [pubmed]
PHST- 2015/01/17 06:00 [medline]
AID - 1471-2229-14-154 [pii]
AID - 10.1186/1471-2229-14-154 [doi]
PST - epublish
SO - BMC Plant Biol. 2014 Jun 3;14:154. doi: 10.1186/1471-2229-14-154.
##### PUB RECORD #####
## 10.1007/s11103-013-0062-z 23636865 null Zhao, Wang et al., 2013 "Zhao L, Wang Z, Lu Q, Wang P, Li Y, Lv Q, Song X, Li D, Gu Y, Liu L, Li W. Overexpression of a GmGBP1 ortholog of soybean enhances the responses to flowering, stem elongation and heat tolerance in transgenic tobaccos. Plant Mol Biol. 2013 Jun;82(3):279-99. doi: 10.1007/s11103-013-0062-z. Epub 2013 May 1. PMID: 23636865." ##
PMID- 23636865
OWN - NLM
STAT- MEDLINE
DCOM- 20130821
LR - 20211021
IS - 1573-5028 (Electronic)
IS - 0167-4412 (Linking)
VI - 82
IP - 3
DP - 2013 Jun
TI - Overexpression of a GmGBP1 ortholog of soybean enhances the responses to
flowering, stem elongation and heat tolerance in transgenic tobaccos.
PG - 279-99
LID - 10.1007/s11103-013-0062-z [doi]
AB - Soybean is a typical short-day crop, and its photoperiodic and gibberellin (GA)
responses for the control of flowering are critical to seed yield. The GmGBP1
mRNA abundance in leaves was dramatically increased in short-days (SDs) compared
to that in long-days in which it was consistently low at all time points from 0
to 6 days (days after transfer to SDs). GmGBP1 was highly expressed in leaves and
exhibited a circadian rhythm in SDs. Ectopic overexpression of GmGBP1 in tobaccos
caused photoperiod-insensitive early flowering by increasing NtCO mRNA levels.
GmGBP1 mRNA abundance was also increased by GAs. Transgenic GmGBP1 overexpressing
(-ox) tobacco plants exhibited increased GA signaling-related phenotypes
including flowering and plant height promotion. Furthermore, the hypocotyl
elongation, early-flowering and longer internode phenotypes were largely
accelerated by GA3 application in the GmGBP1-ox tobacco seedlings. Being
consistent, overexpression of GmGBP1 resulted in significantly enhanced GA
signaling (evidenced suppressed expression of NtGA20ox) both with and without GA
treatments. GmGBP1 was a positive regulator of both photoperiod and GA-mediated
flowering responses. In addition, GmGBP1-ox tobaccos were hypersensitive to ABA,
salt and osmotic stresses during seed germination. Heat-inducible GmGBP1 also
enhanced thermotolerance in transgenic GmGBP1-ox tobaccos during seed germination
and growth. GmGBP1 protein was localized in the nucleus. Analyses of a series of
5'-deletions of the GmGBP1 promoter suggested that several cis-acting elements,
including P-BOX, TCA-motif and three HSE elements necessary to induce gene
expression by GA, salicic acid and heat stress, were specifically localized in
the GmGBP1 promoter region.
FAU - Zhao, Lin
AU - Zhao L
AD - Key Laboratory of Soybean Biology of Chinese Education Ministry (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin 150030, China. zlhappy1981@yahoo.com.cn
FAU - Wang, Zhixin
AU - Wang Z
FAU - Lu, Qingyao
AU - Lu Q
FAU - Wang, Pengpeng
AU - Wang P
FAU - Li, Yongguang
AU - Li Y
FAU - Lv, Qingxue
AU - Lv Q
FAU - Song, Xianping
AU - Song X
FAU - Li, Dongmei
AU - Li D
FAU - Gu, Yuejiao
AU - Gu Y
FAU - Liu, Lixue
AU - Liu L
FAU - Li, Wenbin
AU - Li W
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20130501
PL - Netherlands
TA - Plant Mol Biol
JT - Plant molecular biology
JID - 9106343
RN - 0 (Gibberellins)
RN - 0 (Plant Growth Regulators)
RN - 0 (Plant Proteins)
RN - 0 (Soybean Proteins)
RN - 147336-22-9 (Green Fluorescent Proteins)
RN - 451W47IQ8X (Sodium Chloride)
SB - IM
MH - Adaptation, Physiological/genetics
MH - Arabidopsis/genetics/growth & development
MH - Base Sequence
MH - Cell Nucleus
MH - Flowers/*genetics/growth & development
MH - Gene Expression Regulation, Developmental/drug effects/radiation effects
MH - Gene Expression Regulation, Plant/drug effects/radiation effects
MH - Gibberellins/pharmacology
MH - Green Fluorescent Proteins/genetics/metabolism
MH - *Hot Temperature
MH - Microscopy, Electron, Scanning
MH - Microscopy, Fluorescence
MH - Molecular Sequence Data
MH - Photoperiod
MH - Plant Growth Regulators/pharmacology
MH - Plant Proteins/*genetics/metabolism
MH - Plant Stems/*genetics/growth & development/ultrastructure
MH - Plants, Genetically Modified
MH - Promoter Regions, Genetic/genetics
MH - Reverse Transcriptase Polymerase Chain Reaction
MH - Sodium Chloride/pharmacology
MH - Soybean Proteins/*genetics/metabolism
MH - Soybeans/*genetics/metabolism
MH - Tobacco/*genetics/growth & development
EDAT- 2013/05/03 06:00
MHDA- 2013/08/22 06:00
CRDT- 2013/05/03 06:00
PHST- 2013/01/16 00:00 [received]
PHST- 2013/04/14 00:00 [accepted]
PHST- 2013/05/03 06:00 [entrez]
PHST- 2013/05/03 06:00 [pubmed]
PHST- 2013/08/22 06:00 [medline]
AID - 10.1007/s11103-013-0062-z [doi]
PST - ppublish
SO - Plant Mol Biol. 2013 Jun;82(3):279-99. doi: 10.1007/s11103-013-0062-z. Epub 2013
May 1.
##### PUB RECORD #####
## 10.1093/pcp/pcy215 30418611 null Li, Liu et al., 2019 "Li MW, Liu W, Lam HM, Gendron JM. Characterization of Two Growth Period QTLs Reveals Modification of PRR3 Genes During Soybean Domestication. Plant Cell Physiol. 2019 Feb 1;60(2):407-420. doi: 10.1093/pcp/pcy215. PMID: 30418611." ##
PMID- 30418611
OWN - NLM
STAT- MEDLINE
DCOM- 20190820
LR - 20190820
IS - 1471-9053 (Electronic)
IS - 0032-0781 (Linking)
VI - 60
IP - 2
DP - 2019 Feb 1
TI - Characterization of Two Growth Period QTLs Reveals Modification of PRR3 Genes
During Soybean Domestication.
PG - 407-420
LID - 10.1093/pcp/pcy215 [doi]
AB - Soybean yield is largely dependent on growth period. We characterized two growth
period quantitative trait loci, Gp11 and Gp12, from a recombinant inbred
population generated from a cross of wild (W05) and cultivated (C08) soybean.
Lines carrying Gp11C08 and Gp12C08 tend to have a shorter growth period and
higher expression of GmFT2a and GmFT5a. Furthermore, multiple interval mapping
suggests that Gp11 and Gp12 may be genetically interacting with the E2 locus.
This is consistent with the observation that GmFT2a and GmFT5a are activated by
Gp11C08 and Gp12C08 at ZT4 in the recessive e2 but not the dominant E2
background. Gp11 and Gp12 are duplicated genomic regions each containing a copy
of the soybean ortholog of PSEUDO RESPONSE REGULATOR 3 (GmPRR3A and GmPRR3B).
GmPRR3A and GmPRR3B from C08 carry mutations that delete the CCT domain in the
encoded proteins. These mutations were selected during soybean improvement and
they alter the subcellular localization of GmPRR3A and GmPRR3B. Furthermore,
GmPRR3A and GmPRR3B can interact with TOPLESS-related transcription factors,
suggesting that they function in a transcription repressor complex. This study
addresses previously unexplored components of the genetic network that probably
controls the growth period of soybean and puts these loci into context with the
well-characterized growth period-regulating E loci.
CI - i inverted question mark(1/2) The Author(s) 2018. Published by Oxford University Press on behalf of
Japanese Society of Plant Physiologists. All rights reserved. For permissions,
please email: journals.permissions@oup.com.
FAU - Li, Man-Wah
AU - Li MW
AD - Department of Molecular, Cellular and Developmental Biology, Yale University, New
Haven, CT, USA.
FAU - Liu, Wei
AU - Liu W
AD - Department of Molecular, Cellular and Developmental Biology, Yale University, New
Haven, CT, USA.
FAU - Lam, Hon-Ming
AU - Lam HM
AD - Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology and
School of Life Sciences, The Chinese University of Hong Kong, Shatin, New
Territories, Hong Kong SAR.
FAU - Gendron, Joshua M
AU - Gendron JM
AD - Department of Molecular, Cellular and Developmental Biology, Yale University, New
Haven, CT, USA.
LA - eng
PT - Journal Article
PL - Japan
TA - Plant Cell Physiol
JT - Plant & cell physiology
JID - 9430925
RN - 0 (Plant Proteins)
RN - 0 (Transcription Factors)
MH - *Domestication
MH - Gene Expression Regulation, Plant
MH - Genes, Plant/*genetics/physiology
MH - Phylogeny
MH - Plant Proteins/*genetics/physiology
MH - Quantitative Trait Loci/*genetics
MH - Soybeans/*genetics/growth & development
MH - Transcription Factors/*genetics/physiology
OTO - NOTNLM
OT - Domestication
OT - Flowering
OT - Growth period
OT - Pseudo-response regulator
OT - Soybean
EDAT- 2018/11/13 06:00
MHDA- 2019/08/21 06:00
CRDT- 2018/11/13 06:00
PHST- 2018/06/19 00:00 [received]
PHST- 2018/11/01 00:00 [accepted]
PHST- 2018/11/13 06:00 [pubmed]
PHST- 2019/08/21 06:00 [medline]
PHST- 2018/11/13 06:00 [entrez]
AID - 5168116 [pii]
AID - 10.1093/pcp/pcy215 [doi]
PST - ppublish
SO - Plant Cell Physiol. 2019 Feb 1;60(2):407-420. doi: 10.1093/pcp/pcy215.
##### PUB RECORD #####
## 10.1111/tpj.15414 34245624 null Wang, Li et al., 2021 "Wang X, Li MW, Wong FL, Luk CY, Chung CY, Yung WS, Wang Z, Xie M, Song S, Chung G, Chan TF, Lam HM. Increased copy number of gibberellin 2-oxidase 8 genes reduced trailing growth and shoot length during soybean domestication. Plant J. 2021 Sep;107(6):1739-1755. doi: 10.1111/tpj.15414. Epub 2021 Jul 29. PMID: 34245624." ##
PMID- 34245624
OWN - NLM
STAT- MEDLINE
DCOM- 20220126
LR - 20220126
IS - 1365-313X (Electronic)
IS - 0960-7412 (Linking)
VI - 107
IP - 6
DP - 2021 Sep
TI - Increased copy number of gibberellin 2-oxidase 8 genes reduced trailing growth
and shoot length during soybean domestication.
PG - 1739-1755
LID - 10.1111/tpj.15414 [doi]
AB - Copy number variations (CNVs) play important roles in crop domestication.
However, there is only very limited information on the involvement of CNVs in
soybean domestication. Trailing growth and long shoots are soybean adaptations
for natural habitats but cause lodging that hampers yield in cultivation.
Previous studies have focused on Dt1/2 affecting the indeterminate/determinate
growth habit, whereas the possible role of the gibberellin pathway remained
unclear. In the present study, quantitative trait locus (QTL) mapping of a
recombinant inbred population of 460 lines revealed a
trailing-growth-and-shoot-length QTL. A CNV region within this QTL was
identified, featuring the apical bud-expressed gibberellin 2-oxidase 8A/B, the
copy numbers of which were positively correlated with expression levels and
negatively with trailing growth and shoot length, and their effects were
demonstrated by transgenic soybean and Arabidopsis thaliana. Based on the
fixation index, this CNV region underwent intense selection during the initial
domestication process.
CI - (c) 2021 Society for Experimental Biology and John Wiley & Sons Ltd.
FAU - Wang, Xin
AU - Wang X
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Li, Man-Wah
AU - Li MW
AUID- ORCID: 0000-0003-4859-5683
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Wong, Fuk-Ling
AU - Wong FL
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Luk, Ching-Yee
AU - Luk CY
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Chung, Claire Yik-Lok
AU - Chung CY
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Yung, Wai-Shing
AU - Yung WS
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Wang, Zhili
AU - Wang Z
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Xie, Min
AU - Xie M
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
FAU - Song, Shikui
AU - Song S
AD - FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Haixia
Institute of Science and Technology, Fujian Agriculture and Forestry University,
Fuzhou, China.
FAU - Chung, Gyuhwa
AU - Chung G
AD - Department of Biotechnology, Chonnam National University, Yeosu, South Korea.
FAU - Chan, Ting-Fung
AU - Chan TF
AUID- ORCID: 0000-0002-0489-3884
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
AD - Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen,
518000, China.
FAU - Lam, Hon-Ming
AU - Lam HM
AUID- ORCID: 0000-0002-6673-8740
AD - School of Life Sciences and the Centre for Soybean Research of the State Key
Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin,
Hong Kong, China.
AD - Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen,
518000, China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20210729
PL - England
TA - Plant J
JT - The Plant journal : for cell and molecular biology
JID - 9207397
RN - 0 (Gibberellins)
RN - 0 (Soybean Proteins)
RN - EC 1.- (Mixed Function Oxygenases)
RN - EC 1.14.11.13 (gibberellin 2-dioxygenase)
SB - IM
MH - Arabidopsis/genetics
MH - Chromosome Mapping
MH - DNA Copy Number Variations
MH - *Domestication
MH - Gene Expression Regulation, Plant
MH - Gene Knockdown Techniques
MH - Gene Knockout Techniques
MH - Gibberellins/metabolism
MH - Mixed Function Oxygenases/*genetics
MH - Plant Shoots/genetics/*growth & development
MH - Plants, Genetically Modified
MH - Quantitative Trait Loci
MH - Soybean Proteins/*genetics
MH - Soybeans/*genetics/growth & development
OTO - NOTNLM
OT - domestication
OT - gene copy number
OT - gibberellin 2-oxdase
OT - growth habit
OT - shoot length
OT - soybean
EDAT- 2021/07/11 06:00
MHDA- 2022/01/27 06:00
CRDT- 2021/07/10 17:08
PHST- 2021/06/28 00:00 [revised]
PHST- 2021/03/04 00:00 [received]
PHST- 2021/07/06 00:00 [accepted]
PHST- 2021/07/11 06:00 [pubmed]
PHST- 2022/01/27 06:00 [medline]
PHST- 2021/07/10 17:08 [entrez]
AID - 10.1111/tpj.15414 [doi]
PST - ppublish
SO - Plant J. 2021 Sep;107(6):1739-1755. doi: 10.1111/tpj.15414. Epub 2021 Jul 29.
##### PUB RECORD #####
## 10.1186/1471-2229-13-21 23388059 PMC3571917 Zhang, Zhao et al., 2013 "Zhang Y, Zhao L, Li H, Gao Y, Li Y, Wu X, Teng W, Han Y, Zhao X, Li W. GmGBP1, a homolog of human ski interacting protein in soybean, regulates flowering and stress tolerance in Arabidopsis. BMC Plant Biol. 2013 Feb 6;13:21. doi: 10.1186/1471-2229-13-21. PMID: 23388059; PMCID: PMC3571917." ##
PMID- 23388059
OWN - NLM
STAT- MEDLINE
DCOM- 20130621
LR - 20211021
IS - 1471-2229 (Electronic)
IS - 1471-2229 (Linking)
VI - 13
DP - 2013 Feb 6
TI - GmGBP1, a homolog of human ski interacting protein in soybean, regulates
flowering and stress tolerance in Arabidopsis.
PG - 21
LID - 10.1186/1471-2229-13-21 [doi]
AB - BACKGROUND: SKIP is a transcription cofactor in many eukaryotes. It can regulate
plant stress tolerance in rice and Arabidopsis. But the homolog of SKIP protein
in soybean has been not reported up to now. RESULTS: In this study, the
expression patterns of soybean GAMYB binding protein gene (GmGBP1) encoding a
homolog of SKIP protein were analyzed in soybean under abiotic stresses and
different day lengths. The expression of GmGBP1 was induced by polyethyleneglycol
6000, NaCl, gibberellin, abscisic acid and heat stress. GmGBP1 had
transcriptional activity in C-terminal. GmGBP1 could interact with R2R3 domain of
GmGAMYB1 in SKIP domain to take part in gibberellin flowering pathway. In
long-day (16 h-light) condition, transgenic Arabidopsis with the ectopic
overexpression of GmGBP1 exhibited earlier flowering and less number of rosette
leaves; Suppression of AtSKIP in Arabidopsis resulted in growth arrest, flowering
delay and down-regulation of many flowering-related genes (CONSTANS, FLOWERING
LOCUS T, LEAFY); Arabidopsis myb33 mutant plants with ectopic overexpression of
GmGBP1 showed the same flowering phenotype with wild type. In short-day (8
h-light) condition, transgenic Arabidopsis plants with GmGBP1 flowered later and
showed a higher level of FLOWERING LOCUS C compared with wild type. When treated
with abiotic stresses, transgenic Arabidopsis with the ectopic overexpression of
GmGBP1 enhanced the tolerances to heat and drought stresses but reduced the
tolerance to high salinity, and affected the expressions of several
stress-related genes. CONCLUSIONS: In Arabidopsis, GmGBP1 might positively
regulate the flowering time by affecting CONSTANS, FLOWERING LOCUS T, LEAFY and
GAMYB directly or indirectly in photoperiodic and gibberellin pathways in LDs,
but GmGBP1 might represse flowering by affecting FLOWERING LOCUS C and SHORT
VEGETATIVE PHASE in autonomous pathway in SDs. GmGBP1 might regulate the activity
of ROS-eliminating to improve the resistance to heat and drought but reduce the
high-salinity tolerance.
FAU - Zhang, Yanwei
AU - Zhang Y
AD - Key Laboratory of Soybean Biology in Chinese Education Ministry, College of
Agronomy, Northeast Agricultural University, Harbin, 150030, China.
FAU - Zhao, Lin
AU - Zhao L
FAU - Li, Haiyan
AU - Li H
FAU - Gao, Yang
AU - Gao Y
FAU - Li, Yongguang
AU - Li Y
FAU - Wu, Xiaoxia
AU - Wu X
FAU - Teng, Weili
AU - Teng W
FAU - Han, Yingpeng
AU - Han Y
FAU - Zhao, Xue
AU - Zhao X
FAU - Li, Wenbin
AU - Li W
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20130206
PL - England
TA - BMC Plant Biol
JT - BMC plant biology
JID - 100967807
RN - 0 (Soybean Proteins)
SB - IM
MH - Arabidopsis/genetics/*metabolism/*physiology
MH - Droughts
MH - Flowers/genetics/*metabolism/*physiology
MH - Gene Expression Regulation, Plant
MH - Hot Temperature
MH - Humans
MH - Plants, Genetically Modified/genetics/metabolism/physiology
MH - Soybean Proteins/genetics/*metabolism
MH - Soybeans/genetics/*metabolism
PMC - PMC3571917
EDAT- 2013/02/08 06:00
MHDA- 2013/06/25 06:00
CRDT- 2013/02/08 06:00
PHST- 2012/11/06 00:00 [received]
PHST- 2013/01/28 00:00 [accepted]
PHST- 2013/02/08 06:00 [entrez]
PHST- 2013/02/08 06:00 [pubmed]
PHST- 2013/06/25 06:00 [medline]
AID - 1471-2229-13-21 [pii]
AID - 10.1186/1471-2229-13-21 [doi]
PST - epublish
SO - BMC Plant Biol. 2013 Feb 6;13:21. doi: 10.1186/1471-2229-13-21.
##### PUB RECORD #####
## 10.1111/tpj.14025 30004144 null Zhao, Li et al., 2018 "Zhao L, Li M, Xu C, Yang X, Li D, Zhao X, Wang K, Li Y, Zhang X, Liu L, Ding F, Du H, Wang C, Sun J, Li W. Natural variation in GmGBP1 promoter affects photoperiod control of flowering time and maturity in soybean. Plant J. 2018 Oct;96(1):147-162. doi: 10.1111/tpj.14025. Epub 2018 Aug 16. PMID: 30004144." ##
PMID- 30004144
OWN - NLM
STAT- MEDLINE
DCOM- 20190625
LR - 20190625
IS - 1365-313X (Electronic)
IS - 0960-7412 (Linking)
VI - 96
IP - 1
DP - 2018 Oct
TI - Natural variation in GmGBP1 promoter affects photoperiod control of flowering
time and maturity in soybean.
PG - 147-162
LID - 10.1111/tpj.14025 [doi]
AB - The present study screened for polymorphisms in coding and non-coding regions of
the GmGBP1 gene in 278 soybean accessions with variable maturity and growth habit
characteristics under natural field conditions in three different latitudes in
China. The results showed that the promoter region was highly diversified
compared with the coding sequence of GmGBP1. Five polymorphisms and four
haplotypes were closely related to soybean flowering time and maturity through
association and linkage disequilibrium analyses. Varieties with the polymorphisms
SNP_-796G, SNP_-770G, SNP_-307T, InDel_-242normal, SNP_353A, or haplotypes Hap-3
and Hap-4 showed earlier flowering time and maturity in different environments.
The shorter growth period might be largely due to higher GmGBP1 expression levels
in soybean that were caused by the TCT-motif with SNP_-796G in the promoter. In
contrast, the lower expression level of GmGBP1 in soybean caused by RNAi
interference of GmGBP1 resulted in a longer growth period under different day
lengths. Furthermore, the gene interference of GmGBP1 also caused a reduction in
photoperiod response sensitivity (PRS) before flowering in soybean. RNA-seq
analysis on GmGBP1 underexpression in soybean showed that 94 and 30 predicted
genes were significantly upregulated and downregulated, respectively. Of these,
the diurnal photoperiod-specific expression pattern of three significant
flowering time genes GmFT2a, GmFT5a, and GmFULc also showed constantly lower mRNA
levels in GmGBP1-i soybean than in wild type, especially under short day
conditions. Together, the results showed that GmGBP1 functioned as a positive
regulator upstream of GmFT2a and GmFT5a to activate the expression of GmFULc to
promote flowering on short days.
CI - (c) 2018 The Authors The Plant Journal (c) 2018 John Wiley & Sons Ltd.
FAU - Zhao, Lin
AU - Zhao L
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Li, Minmin
AU - Li M
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Xu, Chongjing
AU - Xu C
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Yang, Xue
AU - Yang X
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Li, Dongmei
AU - Li D
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Zhao, Xue
AU - Zhao X
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Wang, Kuo
AU - Wang K
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Li, Yinghua
AU - Li Y
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Zhang, Xiaoming
AU - Zhang X
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Liu, Lixue
AU - Liu L
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Ding, Fuquan
AU - Ding F
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Du, Hailong
AU - Du H
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Wang, Chunsheng
AU - Wang C
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Sun, Jingzhe
AU - Sun J
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
FAU - Li, Wenbin
AU - Li W
AD - Key Laboratory of Soybean Biology of Ministry of Education China (Key Laboratory
of Biology and Genetics & Breeding for Soybean in Northeast China), Northeast
Agricultural University, Harbin, 150030, China.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20180816
PL - England
TA - Plant J
JT - The Plant journal : for cell and molecular biology
JID - 9207397
RN - 0 (Plant Proteins)
SB - IM
MH - Flowers/*growth & development
MH - Gene Expression Regulation, Plant
MH - Haplotypes
MH - Linkage Disequilibrium
MH - *Photoperiod
MH - Plant Proteins/genetics/*physiology
MH - Polymorphism, Single Nucleotide/genetics/physiology
MH - Promoter Regions, Genetic/genetics/*physiology
MH - Soybeans/genetics/growth & development/*physiology
OTO - NOTNLM
OT - SNP
OT - GmGBP1 gene
OT - photoperiod
OT - promoter
OT - soybean maturity
EDAT- 2018/07/14 06:00
MHDA- 2019/06/27 06:00
CRDT- 2018/07/14 06:00
PHST- 2018/01/31 00:00 [received]
PHST- 2018/06/21 00:00 [revised]
PHST- 2018/06/26 00:00 [accepted]
PHST- 2018/07/14 06:00 [pubmed]
PHST- 2019/06/27 06:00 [medline]
PHST- 2018/07/14 06:00 [entrez]
AID - 10.1111/tpj.14025 [doi]
PST - ppublish
SO - Plant J. 2018 Oct;96(1):147-162. doi: 10.1111/tpj.14025. Epub 2018 Aug 16.
##### PUB RECORD #####
## 10.1111/j.1365-313x.2010.04214.x 20345602 null Yi, Jinxin et al., 2010 "Yi J, Derynck MR, Li X, Telmer P, Marsolais F, Dhaubhadel S. A single-repeat MYB transcription factor, GmMYB176, regulates CHS8 gene expression and affects isoflavonoid biosynthesis in soybean. Plant J. 2010 Jun 1;62(6):1019-34. doi: 10.1111/j.1365-313X.2010.04214.x. Epub 2010 Mar 25. PMID: 20345602." ##
PMID- 20345602
OWN - NLM
STAT- MEDLINE
DCOM- 20100927
LR - 20220310
IS - 1365-313X (Electronic)
IS - 0960-7412 (Linking)
VI - 62
IP - 6
DP - 2010 Jun 1
TI - A single-repeat MYB transcription factor, GmMYB176, regulates CHS8 gene
expression and affects isoflavonoid biosynthesis in soybean.
PG - 1019-34
LID - 10.1111/j.1365-313X.2010.04214.x [doi]
AB - Here we demonstrate that GmMYB176 regulates CHS8 expression and affects
isoflavonoid synthesis in soybean. We previously established that CHS8 expression
determines the isoflavonoid level in soybean seeds by comparing the transcript
profiles of cultivars with different isoflavonoid contents. In the present study,
a functional genomic approach was used to identify the factor that regulates CHS8
expression and isoflavonoid synthesis. Candidate genes were cloned, and
co-transfection assays were performed in Arabidopsis leaf protoplasts. The
results showed that GmMYB176 can trans-activate the CHS8 promoter with maximum
activity. Transient expression of GmMYB176 in soybean embryo protoplasts
increased endogenous CHS8 transcript levels up to 169-fold after 48 h. GmMYB176
encodes an R1 MYB protein, and is expressed in soybean seed during maturation.
Furthermore, GmMYB176 recognizes a 23 bp motif containing a TAGT(T/A)(A/T)
sequence within the CHS8 promoter. A subcellular localization study confirmed
nuclear localization of GmMYB176. A predicted pST binding site for 14-3-3 protein
is required for subcellular localization of GmMYB176. RNAi silencing of GmMYB176
in hairy roots resulted in reduced levels of isoflavonoids, showing that GmMYB176
is necessary for isoflavonoid biosynthesis. However, over-expression of GmMYB176
was not sufficient to increase CHS8 transcript and isoflavonoid levels in hairy
roots. We conclude that an R1 MYB transcription factor, GmMYB176, regulates CHS8
expression and isoflavonoid synthesis in soybean.
FAU - Yi, Jinxin
AU - Yi J
AD - Southern Crop Protection and Food Research Center, Agriculture and Agri-Food
Canada, London, Ontario, N5V 4T3, Canada.
FAU - Derynck, Michael R
AU - Derynck MR
FAU - Li, Xuyan
AU - Li X
FAU - Telmer, Patrick
AU - Telmer P
FAU - Marsolais, Frederic
AU - Marsolais F
FAU - Dhaubhadel, Sangeeta
AU - Dhaubhadel S
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20100325
PL - England
TA - Plant J
JT - The Plant journal : for cell and molecular biology
JID - 9207397
RN - 0 (Flavonoids)
RN - 0 (Plant Proteins)
RN - 0 (RNA, Plant)
RN - 0 (Transcription Factors)
SB - IM
CIN - Plant Signal Behav. 2010 Jul;5(7):921-3. PMID: 20622511
MH - Amino Acid Sequence
MH - Flavonoids/*biosynthesis
MH - Gene Expression Profiling
MH - Gene Expression Regulation, Plant
MH - Molecular Sequence Data
MH - Mutagenesis, Site-Directed
MH - Phylogeny
MH - Plant Proteins/genetics/*metabolism
MH - Plant Roots/metabolism
MH - Promoter Regions, Genetic
MH - RNA Interference
MH - RNA, Plant/genetics
MH - Seeds/*metabolism
MH - Sequence Alignment
MH - Sequence Analysis, DNA
MH - Soybeans/genetics/metabolism
MH - Transcription Factors/genetics/*metabolism
EDAT- 2010/03/30 06:00
MHDA- 2010/09/29 06:00
CRDT- 2010/03/30 06:00
PHST- 2010/03/30 06:00 [entrez]
PHST- 2010/03/30 06:00 [pubmed]
PHST- 2010/09/29 06:00 [medline]
AID - TPJ4214 [pii]
AID - 10.1111/j.1365-313X.2010.04214.x [doi]
PST - ppublish
SO - Plant J. 2010 Jun 1;62(6):1019-34. doi: 10.1111/j.1365-313X.2010.04214.x. Epub
2010 Mar 25.
##### PUB RECORD #####
## 10.1038/s42003-021-01889-6 33742087 null Vadivel, Anguraj AK, et al., 2021 "Anguraj Vadivel AK, McDowell T, Renaud JB, Dhaubhadel S. A combinatorial action of GmMYB176 and GmbZIP5 controls isoflavonoid biosynthesis in soybean (Glycine max). Commun Biol. 2021 Mar 19;4(1):356. doi: 10.1038/s42003-021-01889-6. PMID: 33742087; PMCID: PMC7979867." ##
PMID- 33742087
OWN - NLM
STAT- MEDLINE
DCOM- 20210811
LR - 20210811
IS - 2399-3642 (Electronic)
IS - 2399-3642 (Linking)
VI - 4
IP - 1
DP - 2021 Mar 19
TI - A combinatorial action of GmMYB176 and GmbZIP5 controls isoflavonoid biosynthesis
in soybean (Glycine max).
PG - 356
LID - 10.1038/s42003-021-01889-6 [doi]
LID - 356
AB - GmMYB176 is an R1 MYB transcription factor that regulates multiple genes in the
isoflavonoid biosynthetic pathway, thereby affecting their levels in soybean
roots. While GmMYB176 is important for isoflavonoid synthesis, it is not
sufficient for the function and requires additional cofactor(s). The aim of this
study was to identify the GmMYB176 interactome for the regulation of isoflavonoid
biosynthesis in soybean. Here, we demonstrate that a bZIP transcription factor
GmbZIP5 co-immunoprecipitates with GmMYB176 and shows protein-protein interaction
in planta. RNAi silencing of GmbZIP5 reduced the isoflavonoid level in soybean
hairy roots. Furthermore, co-overexpression of GmMYB176 and GmbZIP5 enhanced the
level of multiple isoflavonoid phytoallexins including glyceollin, isowighteone
and a unique O-methylhydroxy isoflavone in soybean hairy roots. These findings
could be utilized to develop biotechnological strategies to manipulate the
metabolite levels either to enhance plant defense mechanisms or for human health
benefits in soybean or other economically important crops.
FAU - Anguraj Vadivel, Arun Kumaran
AU - Anguraj Vadivel AK
AUID- ORCID: 0000-0002-6384-6316
AD - London Research and Development Centre, Agriculture and Agri-Food Canada, London,
ON, Canada.
AD - Department of Biology, University of Western Ontario, London, ON, Canada.
FAU - McDowell, Tim
AU - McDowell T
AUID- ORCID: 0000-0001-5334-1923
AD - London Research and Development Centre, Agriculture and Agri-Food Canada, London,
ON, Canada.
FAU - Renaud, Justin B
AU - Renaud JB
AD - London Research and Development Centre, Agriculture and Agri-Food Canada, London,
ON, Canada.
FAU - Dhaubhadel, Sangeeta
AU - Dhaubhadel S
AUID- ORCID: 0000-0003-2582-5503
AD - London Research and Development Centre, Agriculture and Agri-Food Canada, London,
ON, Canada. sangeeta.dhaubhadel@canada.ca.
AD - Department of Biology, University of Western Ontario, London, ON, Canada.
sangeeta.dhaubhadel@canada.ca.
LA - eng
PT - Journal Article
PT - Research Support, Non-U.S. Gov't
DEP - 20210319
PL - England
TA - Commun Biol
JT - Communications biology
JID - 101719179
RN - 0 (Basic-Leucine Zipper Transcription Factors)
RN - 0 (Isoflavones)
RN - 0 (Pterocarpans)
RN - 0 (Soybean Proteins)
RN - 0 (Transcription Factors)
RN - 6461TV6UCH (glyceollin)
SB - IM
MH - Basic-Leucine Zipper Transcription Factors/genetics/metabolism
MH - Gene Expression Regulation, Plant
MH - Isoflavones/*biosynthesis
MH - Plant Roots
MH - Protein Binding
MH - Pterocarpans/biosynthesis
MH - Soybean Proteins/genetics/*metabolism
MH - Soybeans/genetics/*metabolism
MH - Transcription Factors/genetics/*metabolism
PMC - PMC7979867
COIS- The authors declare no competing interests.
EDAT- 2021/03/21 06:00
MHDA- 2021/08/12 06:00
CRDT- 2021/03/20 06:33
PHST- 2020/09/03 00:00 [received]
PHST- 2021/02/19 00:00 [accepted]
PHST- 2021/03/20 06:33 [entrez]
PHST- 2021/03/21 06:00 [pubmed]
PHST- 2021/08/12 06:00 [medline]
AID - 10.1038/s42003-021-01889-6 [pii]
AID - 1889 [pii]
AID - 10.1038/s42003-021-01889-6 [doi]
PST - epublish
SO - Commun Biol. 2021 Mar 19;4(1):356. doi: 10.1038/s42003-021-01889-6.