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#filename in this repository:                                 description
glyma.Wm82.gnm2.div.Zhang_Jiang_2020.info_accessions.txt.gz:  Table of Accessions used in this study including VCF ID, PI, Common Name and Species.
glyma.Wm82.gnm2.div.Zhang_Jiang_2020.nonSyn_SNPs.gtf.gz:      List of non-Synonymous SNPs from all 20 chromosomes. 
glyma.Wm82.gnm2.div.Zhang_Jiang_2020.SNPdata_full.vcf.gz:     Full VCF file received from Charles An Lab. 
glyma.Wm82.gnm2.div.Zhang_Jiang_2020.SNPdata_maf01.vcf.gz:    Original VCF file (SNPData_Full.vcf.gz) filtered for minor allele frequency (MAF) of 1%.
glyma.Wm82.gnm2.div.Zhang_Jiang_2020.SNPdata_maf05.vcf.gz:    Original VCF file (SNPData_Full.vcf.gz) filtered for minor allele frequency (MAF) of 5%.
glyma.Wm82.gnm2.div.Zhang_Jiang_2020.NonsynSNPs_provean_freq01.gtf: Nonsynonymous SNPs reported by PROVEAN, with parameters -D=2.5 and allele frequency=0.01
glyma.Wm82.gnm2.div.Zhang_Jiang_2020.NonsynSNPs_provean_freq01.vcf: Nonsynonymous SNPs reported by PROVEAN, with parameters -D=2.5 and allele frequency=0.01