--- identifier: Wm82.gnm2.div.Song_Hyten_2015 provenance: "The files in this directory originated from NCBI dbSNP (https://www.ncbi.nlm.nih.gov/projects/SNP/). The NCBI dbSNP repository is considered the primary repository and authoritative; files in this present directory are derived, and may have changes, as noted below. The files here are held as part of the LegumeInfo, SoyBase, and LegumeFederation projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo, SoyBase, and Legume Federation project(s). If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please 1) please cite the data appropriately - generally referring to the original publications for this data; and if you make use of any significant modifications in the files (noted below under Transformations where applicable), then please also cite the respective database project(s) related to this directory." source: "ftp://ftp.ncbi.nih.gov/snp/organisms/soybean_3847/viewBatch/snpBatch_BARC_1059007.gz" synopsis: "VCF, HapMap, and Flapjack files containing genotype information of the whole U.S. soybean germplasm collection using the SoySNP50K BeadChip." scientific_name: Glycine max taxid: 3847 scientific_name_abbrev: glyma genotype: - U.S. Soybean Germplasm Collection (Glycine max and Glycine soja) description: "Multiple files containing genotype information of the U.S. soybean germplasm collection genotyped with the SoySNP50K BeadChip. Data included in this set are VCF files, HapMap files, and files to be used for the program Flapjack." genotyping_platform: SoySNP50K genbank_accession: "ss715578401, ss715639200, rs121965363, rs864620262" original_file_creation_date: "2015-07-28" local_file_creation_date: "2016-10-01" publication_doi: 10.1534/g3.115.019000 dataset_release_date: "2015-07-28" publication_title: Fingerprinting Soybean Germplasm and Its Utility in Genomic Research contributors: Qijian Song, David L. Hyten, Gaofeng Jia, Charles V. Quigley, Edward W. Fickus, Randall L. Nelson, and Perry B. Cregan data_curators: Anne V. Brown, Jacqueline D. Campbell public_access_level: public license: Open keywords: soybean, germplasm, genotyping, SoySNP50K, genetic diversity, haplotype block, map citation: "Song, Q., Hyten, D. L., Jia, G., Quigley, C. V., Fickus, E. W., Nelson, R. L., & Cregan, P. B. (2015). Fingerprinting soybean germplasm and its utility in genomic research. G3: Genes, Genomes, Genetics, 5(10), 1999-2006."