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# filename in this repository: description
glyma.Wm82.gnm1.Song_Hyten_2015.hmp.txt.gz: HapMap file of the whole U.S. germplasm collection genotyped with SoySNP50K against Williams82 Reference genome a1 (Wm82.a1.v1.1)
glyma.Wm82.gnm1.Song_Hyten_2015.Flapjack.txt.gz: Text file containing genotype information of each soybean accession. Columns are ssIDs and rows are Accessions. To be used with soysnp50K_wm82.a1_markerMap.txt as input into the Flapjack Program
glyma.Wm82.gnm1.Song_Hyten_2015.markerMap.txt.gz: Text file containing ssIDs and their positions in Wm82.a1.v1 reference genome. To be used with soysnp50K_wm82.a1_070617_Flapjack.txt.gz as input into the Flapjack Program