---
file_transformation: 
changes: 
  - 2018-02-28 added prefixes to glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.gff3
  - 2018-03-01 moved file lists into MANIFEST files
  - 2018-03-01 rm glyma.Wm82.gnm1.ann1.DvBy.gene_exons.gff3.gz
  - 2018-03-01 filename cleanup
  - 2018-07-12 Changed fasta header in all *.fna and *.faa files (perl -pi -e 's/>Glyma/>glyma.Wm82.gnm1.ann1./')
  - 2018-09-15 fixes to the above (s/>Glyma/>glyma.Wm82.gnm1.ann1.Glyma/)
  - 2020-09-22 added gene family assignments
  - 2021-05-25 updated gene family assignments to use score rather than e-value 
  - 2022-01-26 added glyma.Wm82.gnm1.ann1.DvBy.legfed_v1_0.M65K.pathway.tsv.gz
  - 2023-04-04 bgzipped, sorted and added tabix file to glyma.Wm82.gnm1.ann1.DvBy.gene_models_main.gff3.gz and deleted glyma.Wm82.gnm1.ann1.DvBy.gene_models.gff3.gz file
  - 2023-06-08 adf: add AHRD with GO/IPR in descriptors
  - 2024-04-11 sbc: update synopsis to include JGI numbering