--- taxid: 3847 genus: Glycine species: max abbrev: glyma commonName: soybean description: "Soybean (Glycine max), the predominant oil-seed legume worldwide, was likely domesticated in East Asia, ~6000-9000 years ago (Sedivy et al., 2017; https://doi.org/10.1111/nph.14418). It has many culinary and industrial uses. Some of the culinary uses include: for direct consumption of the green seed (i.e. edamame) and leaves (cooked, much like spinach); for tofu, soymilk, textured vegetable protein, soy sauce, tempeh, natto, and vegetable oil. Industrial uses include: oils, soap, cosmetics, and biodiesel. Soybean is also used as a high-protein forage, and can be prepared for fish- and animal-feed." resources: - name: GlycineMine URL: "https://mines.legumeinfo.org/glycinemine/begin.do" description: "InterMine interface for accessing genetic and genomic data for several species in Glycine." - name: ZZBrowse URL: "https://zzbrowse.legumeinfo.org/?tab=WhGen&datasets=Peanut%20GWAS&chr=Arahy.01&selected=100000&window=250000&datasets2=Soybean%20GWAS&chr2=Gm01&selected2=100000&window2=250000" description: "Association viewers (QTL, GWAS)" - name: GCViT URL: "https://soybase.org/gcvit" description: "Genotype comparison visualization tool " - name: Genome Context Viewer URL: "https://gcv.legumeinfo.org/gene;lis=glyma.Glyma.15G255600?q=Glyma.15G255600&sources=lis&algorithm=repeat&match=10&mismatch=-1&gap=-1&score=30&threshold=25&bmatched=20&bintermediate=10&bmask=10&linkage=average&cthreshold=20&neighbors=10&matched=4&intermediate=5&bregexp=&border=chromosome®exp=&order=distance" description: "Browser for dynamically discovering and viewing genomic synteny across selected species." - name: Grin Data Explorer URL: "https://soybase.org/grindata/" description: "Tool to facilitate searches of GRIN Descriptor Data" strains: - identifier: Wm82 accession: PI 704477 name: Williams 82 accession_group: Reference - Williams 82 origin: Northern United States description: "Glycine max var. Williams 82 is an inbred line developed by Robert Stupar (University of Minnesota) by inbreeding original W82 seed. The resulting genome issembly, Wm82.a6 / Wm82.gnm6 (previously also called 82-ISU-01), is a near-complete haploid version of W82, with high-quality gene annotations that correspond when possible to the Wm82.a2 and Wm82.a4 gene model names." - identifier: Wm82 accession: PI 518671 name: Williams 82 accession_group: Reference - Williams 82 origin: Northern United States description: "Williams 82, the soybean cultivar used to produce the reference genome sequence, was derived from backcrossing a phytophthora root rot resistance locus from the donor parent Kingwa into the recurrent parent Williams." - identifier: Lee accession: PI 548656 accession_group: Reference - Lee name: Lee origin: Southern United States description: "Cultivar Lee, which derives from a cross of Chinese lines CNS and S-100, has been widely used as a parent in many breeding projects in the Southern U.S. and in Brazil (Wysmierski and Vello, 2013; http://doi.org/10.1590/S1415-47572013005000041). The variety is notable for resistance to Phytophthora rot, Peanut Mottle Virus, and bacterial pustule (Wysmierski and Vello, 2013)." - identifier: FiskebyIII accession: PI 438471 accession_group: Reference - Fiskeby III name: Fiskeby III origin: Fiskeby, Norrköpping, Sweden description: "Bred by the late Dr. Sven Holmberg in Fiskeby, Norrköpping, Sweden. Highly nutritious — up to 40% protein, high in calcium, iron, and vitamins (particularly A, B1, B12, and C). Thrives in northern climates. 75-80 days." - identifier: Zh13 accession: GWHAAEV00000000.1 accession_group: Reference - Zhonghuang 13 name: Zhonghuang 13 origin: China description: "Zhonghuang 13 is a Chinese cultivar derived from accessions Yudou 18 and Zhongzuo 90052-76 by pedigree selection for high yield and stress tolerance (Shen et al., 2018; https://doi.org/10.1007/s11427-018-9360-0)." - identifier: Hwangkeum accession: Hwangkeum accession_group: Reference - Hwangkeum name: Hwangkeum origin: South Korea description: "Hwangkeum is an important South Korean cultivar, released in 1979 and widely used since then as a breeding parent in Korea. Hwangkeum has a determinate growth habit and nonshattering pods and is adapted to the middle Korean peninsula (Maturity Group V)." - identifier: JD17 accession: GCA_021733175.1 accession_group: Reference - Jidou 17 name: Jidou 17 origin: China description: "Jidou 17 is an Chinese elite cultivar, widely grown in central China (in maturity group III). This variety is recognized for high yields and tolerance for high planting densities." - identifier: Hefeng25_IGA1002 accession: IGA1002 accession_group: Chu, Peng et al., 2021 name: Hefeng 25 origin: Jiamusi Branch of Heilongjiang Academy of Agricultural Sciences description: "Glycine max Hefeng 25 (IGA1002) was sequenced and annotated by Chu, et al. (2021)." - identifier: Huaxia3_IGA1007 accession: IGA1007 accession_group: Chu, Peng et al., 2021 name: Huaxia 3 origin: South China Agricultural University description: "Glycine max Huaxia 3 (IGA1007) was sequenced and annotated by Chu, et al. (2021)." - identifier: Jinyuan_IGA1006 accession: IGA1006 accession_group: Chu, Peng et al., 2021 name: Jinyuan origin: National Soybean Preservation Center, ICS, CAAS description: "Glycine max Jinyuan (IGA1006) was sequenced and annotated by Chu, et al. (2021)." - identifier: Wenfeng7_IGA1001 accession: IGA1001 accession_group: Chu, Peng et al., 2021 name: Wenfeng 7 origin: National Soybean Preservation Center, ICS, CAAS description: "Glycine max Wenfeng 7 (IGA1001) was sequenced and annotated by Chu, et al. (2021)." - identifier: Wm82_IGA1008 accession: IGA1008 accession_group: Chu, Peng et al., 2021 name: Williams 82 origin: Northeast Institute of Geography and Agroecology, CAS description: "Williams 82, the soybean cultivar used to produce the reference genome sequence, was derived from backcrossing a phytophthora root rot resistance locus from the donor parent Kingwa into the recurrent parent Williams. This line, IGA1008, was sequenced and annotated by Chu, et al. (2021)." - identifier: Zh13_IGA1005 accession: IGA1005 accession_group: Chu, Peng et al., 2021 name: Zhonghuang 13 origin: National Soybean Improvement Sub-Center, ICS, CAAS description: "Zhonghuang 13 is a Chinese cultivar derived from accessions Yudou 18 and Zhongzuo 90052-76 by pedigree selection for high yield and stress tolerance (Shen et al., 2018; https://doi.org/10.1007/s11427-018-9360-0). This line, IGA1005, was sequenced and annotated by Chu, et al. (2021)." - identifier: Zh35_IGA1004 accession: IGA1004 accession_group: Chu, Peng et al., 2021 name: Zhonghuang 35 origin: National Soybean Improvement Sub-Center, ICS, CAAS description: "Glycine max Zhonghuang 35 (IGA1004) was sequenced and annotated by Chu, et al. (2021)." - identifier: 58-161 accession: SoyL04 accession_group: Liu, Du et al., 2020 name: 58-161 origin: China, Jiang Su description: Landrace 58-161 (SoyL04 from China, Jiang Su, from Liu et al. 2020 - identifier: Amsoy accession: SoyC05 accession_group: Liu, Du et al., 2020 name: Amsoy origin: United States, Iowa description: Cultivar Amsoy (SoyC05 from United States, Iowa, from Liu et al. 2020 - identifier: DongNongNo_50 accession: SoyC12 accession_group: Liu, Du et al., 2020 name: Dong Nong No.50 origin: China, Hei Long Jiang description: Cultivar Dong Nong No.50 (SoyC12 from China, Hei Long Jiang, from Liu et al. 2020 - identifier: FengDiHuang accession: SoyL07 accession_group: Liu, Du et al., 2020 name: Feng Di Huang origin: China, Ji Lin description: Landrace Feng Di Huang (SoyL07 from China, Ji Lin, from Liu et al. 2020 - identifier: HanDouNo_5 accession: SoyC09 accession_group: Liu, Du et al., 2020 name: Han Dou No.5 origin: China, He Bei description: Cultivar Han Dou No.5 (SoyC09 from China, He Bei, from Liu et al. 2020 - identifier: HeiHeNo_43 accession: SoyC13 accession_group: Liu, Du et al., 2020 name: Hei He No.43 origin: China, Hei Long Jiang description: Cultivar Hei He No.43 (SoyC13 from China, Hei Long Jiang, from Liu et al. 2020 - identifier: JiDouNo_17 accession: SoyC11 accession_group: Liu, Du et al., 2020 name: Ji Dou No.17 origin: China, He Bei description: Cultivar Ji Dou No.17 (SoyC11 from China, He Bei, from Liu et al. 2020 - identifier: JinDouNo_23 accession: SoyC07 accession_group: Liu, Du et al., 2020 name: Jin Dou No.23 origin: China, Shan Xi description: Cultivar Jin Dou No.23 (SoyC07 from China, Shan Xi, from Liu et al. 2020 - identifier: JuXuanNo_23 accession: SoyC03 accession_group: Liu, Du et al., 2020 name: Ju Xuan No.23 origin: China, Shan Dong description: Cultivar Ju Xuan No.23 (SoyC03 from China, Shan Dong, from Liu et al. 2020 - identifier: KeShanNo_1 accession: SoyC14 accession_group: Liu, Du et al., 2020 name: Ke Shan No.1 origin: China, Hei Long Jiang description: Cultivar Ke Shan No.1 (SoyC14 from China, Hei Long Jiang, from Liu et al. 2020 - identifier: PI_398296 accession: SoyL05 accession_group: Liu, Du et al., 2020 name: PI 398296 origin: South Korea, Kyonggi description: Landrace PI 398296 (SoyL05 from South Korea, Kyonggi, from Liu et al. 2020 - identifier: PI_548362 accession: SoyC10 accession_group: Liu, Du et al., 2020 name: PI 548362 origin: United States, Illinois description: Cultivar PI 548362 (SoyC10 from United States, Illinois, from Liu et al. 2020 - identifier: QiHuangNo_34 accession: SoyC08 accession_group: Liu, Du et al., 2020 name: Qi Huang No.34 origin: China, Shan Dong description: Cultivar Qi Huang No.34 (SoyC08 from China, Shan Dong, from Liu et al. 2020 - identifier: ShiShengChangYe accession: SoyL09 accession_group: Liu, Du et al., 2020 name: Shi Sheng Chang Ye origin: Japan, Hokkaido description: Landrace Shi Sheng Chang Ye (SoyL09 from Japan, Hokkaido, from Liu et al. 2020 - identifier: TieFengNo_18 accession: SoyC02 accession_group: Liu, Du et al., 2020 name: Tie Feng No.18 origin: China, Hei Long Jiang description: Cultivar Tie Feng No.18 (SoyC02 from China, Hei Long Jiang, from Liu et al. 2020 - identifier: TieJiaSiLiHuang accession: SoyL08 accession_group: Liu, Du et al., 2020 name: Tie Jia Si Li Huang origin: China, Ji Lin description: Landrace Tie Jia Si Li Huang (SoyL08 from China, Ji Lin, from Liu et al. 2020 - identifier: TongShanTianEDan accession: SoyL03 accession_group: Liu, Du et al., 2020 name: Tong Shan Tian E Dan origin: China, Jiang Su description: Landrace Tong Shan Tian E Dan (SoyL03 from China, Jiang Su, from Liu et al. 2020 - identifier: WanDouNo_28 accession: SoyC04 accession_group: Liu, Du et al., 2020 name: Wan Dou No.28 origin: China, An Hui description: Cultivar Wan Dou No.28 (SoyC04 from China, An Hui, from Liu et al. 2020 - identifier: XuDouNo_1 accession: SoyC01 accession_group: Liu, Du et al., 2020 name: Xu Dou No.1 origin: China, Jiang Su description: Cultivar Xu Dou No.1 (SoyC01 from China, Jiang Su, from Liu et al. 2020 - identifier: YuDouNo_22 accession: SoyC06 accession_group: Liu, Du et al., 2020 name: Yu Dou No.22 origin: China, He Nan description: Cultivar Yu Dou No.22 (SoyC06 from China, He Nan, from Liu et al. 2020 - identifier: ZhangChunManCangJin accession: SoyL06 accession_group: Liu, Du et al., 2020 name: Chang Chun Man Cang Jin origin: China, Ji Lin description: Landrace Chang Chun Man Cang Jin (SoyL06 from China, Ji Lin, from Liu et al. 2020 - identifier: Zhutwinning2 accession: SoyL01 accession_group: Liu, Du et al., 2020 name: Zhutwinning2 origin: China description: Landrace Zhutwinning2 (SoyL01 from China, from Liu et al. 2020 - identifier: ZiHuaNo_4 accession: SoyL02 accession_group: Liu, Du et al., 2020 name: Zi Hua No.4 origin: China, Hei Long Jiang description: Landrace Zi Hua No.4 (SoyL02 from China, Hei Long Jiang, from Liu et al. 2020 - identifier: Wm82_NJAU accession: Wm82_NJAU accession_group: name: "Williams 82 Nanjing Agricultural University" origin: "Nanjing Agricultural University" description: "Williams 82 sequenced for T2T assembly of Wang, Zhang et al. 2023"