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# filename in this repository: description
Glycine.pan4.RK4P.clust.tsv.gz: Pan-gene sets, in cluster format: ID in first column, followed by tab-separated gene list.
Glycine.pan4.RK4P.counts.tsv.gz: Matrix of counts of genes per annotation set for each pan-gene set.
Glycine.pan4.RK4P.hsh.tsv.gz: Pan-gene sets, in a two-column hash format, with the set ID in the first column and genes in the second.
Glycine.pan4.RK4P.inclusive_cds.fna.gz: CDS pan-gene sequence, inclusive (not filtered by minimum cluster size or annotation-set representation).
Glycine.pan4.RK4P.inclusive_protein.faa.gz: Protein pan-gene sequence, inclusive (not filtered by minimum cluster size or annotation-set representation).
Glycine.pan4.RK4P.pctl25_named_cds.fna.gz: CDS pan-gene sequence, omitting pan-genes smaller than 25% of the mode, with derived pan-gene IDs corresponding with consensus chromosome and ordinal position.
Glycine.pan4.RK4P.pctl25_named_protein.faa.gz: Protein pan-gene sequence, omitting pan-genes smaller than 25% of the mode, with derived pan-gene IDs corresponding with consensus chromosome and ordinal position.
Glycine.pan4.RK4P.complement.fna.gz: Complement of genes in this pan-gene set; i.e. not clustered, presumed to be singletons.
Glycine.pan4.RK4P.stats.txt.gz: Descriptive statistics about program parameters, input sequences, and pan-gene products.
Glycine.pan4.RK4P.table_ref_lines.tsv.gz: Table of genes from reference accessions, organized in columns by accessions
Glycine.pan4.RK4P.table.tsv.gz: Table of genes from all accessions, organized in columns by accessions