--- file_transformation: - changes: - 2021-08-10 Initial repository creation - 2021-08-20 Creation of new gene_models_main.gff3 to fix GFF structure and filter out ORFs < 90 bp - 2021-08-20 Creation of new CDS and protein files to correspond with gene_models_main.gff3 - 2021-08-31 adf: added AHRD into gene_models_main, associated iprscan gff, gene family assignment file, and gffread derived transcript file. - 2021-12-29 shokin: replaced "glytoD3" with "glyto" everywhere to conform to 5-character gensp requirement - 2022-01-01 adf: replaced "glyto" with "glyd3" everywhere per resolution of discussion on this subject - 2033-11-19 jdc: Edited publication doi; publication title; contributors and citation.