---
identifier: ICPL87119.gnm1.syn.Nkx0

synopsis: Synteny mappings among the genomes. See genome assemblies indicated in the synteny comparisons.

scientific_name: Cajanus cajan

taxid: 3821

scientific_name_abbrev: cajca

description: "Synteny calculations involves identification of orthologous genes by selecting reciprocal top hits between chromosome pairs from an all-against-all blastp search of genes between two species (evalue threshold of 1e-10), followed by DAGchainer to predict chains of syntenic genes in complete genomes. Proportions of synonymous-site changes (Ks) between orthologs are calculated, and synteny blocks are filtered for block-wise median Ks values. Synteny blocks have also been calculated to show these paralogous WGD-derived duplications."

local_file_creation_date: "2018-05-23"

dataset_release_date: "2018-05-23"

contributors: "Wei Huang, Steven Cannon"

data_curators: Jacqueline Campbell

public_access_level: public

license: Open

citation: "Dash S, Campbell JD, Cannon EKS, Cleary AM, Huang W, Kalberer SR, Karingula V, Rice AG, Singh J, Umale PE, Weeks NT, Wilkey AP, Farmer AD, Cannon SB. Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. Nucleic Acids Research 44, D1181-D1188 (2015)."