---
identifier: Tifrunner.gnm2.J5K5

provenance: "The files in this directory are a product of the International Peanut Genome Initiative. The files here are held as part of the LegumeInfo and Peanutbase projects, and are made available here for the purpose of reproducibility of analyses at these sites (e.g. gene family alignments and phylogenies, genome browsers, etc.) and for further use by researchers, as that research extends other analyses at the LegumeInfo and Peanutbase projects. If you are conducting research on large-scale data sets for this species, please consider retrieving the data from the primary repositories. If you use the data in the present directory, please respect any usage restrictions in the present and original repositories, and cite the data appropriately."

source: "https://peanutbase.org/data/"

synopsis: "Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1."

scientific_name: Arachis hypogaea

taxid: 3818

bioproject: PRJNA419393

scientific_name_abbrev: arahy

genotype:
  - Tifrunner

description: "Genome assembly for Arachis hypogaea cultivar Tifrunner. This version is essentially the same as Tifrunner version 1 (arahy.Tifrunner.gnm1.KYV3.genome_main.fna) at the basepair level, but has several large structural rearrangements, on the basis of HiC assessments. The largest changes are: a translocation of ~8 Mbp in the pericentromere of A02; several rearrangements in the pericentromere of A03; a swap in the telomeric regions of A06 and B06; inversion of a small scaffold from the distal end of A08; inversion of a telomeric region in B05; other small changes in telomeric regions of several pseudomolecules: B10, B09, A08."

chromosome_prefix: chr

supercontig_prefix: scaffold

sraproject: 

dataset_doi: 

genbank_accession: 

original_file_creation_date: "2019-03-01"

local_file_creation_date: "2019-05-01"

dataset_release_date: "2019-05-01"

publication_doi: 10.1038/s41588-019-0405-z

publication_title: "The genome sequence of segmental allotetraploid peanut Arachis hypogaea"

contributors: "The International Peanut Genome Initiative; lead assembly group Jeremy Schmutz, Jerry Jenkins, Jane Grimwood; project leads David Bertioli; Soraya Bertioli; Brian Schleffler; Scott Jackson; Peggy Ozias-Akins; HiC assessments and corrections: Melanie Pham, Olga Dudchenko; Erez Lieberman Aiden lab. Annotation by Jacqueline Campbell, Connor Cameron, and Andrew Farmer."

citation: "Bertioli, D.J., Jenkins, J., Clevenger, J. et al. The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nat Genet 51, 877-884 (2019). https://doi.org/10.1038/s41588-019-0405-z"

data_curators: Ethalinda Cannon, Steven Cannon, Jerry Jenkins, Andrew Farmer

public_access_level: public

license: open

keywords: peanut, Arachis hypogaea, Tifrunner