identifier: Tifrunner.gnm2.J5K5

provenance: The files in this directory are considered the primary instances, but they are also initial assembly versions, prior to deposition into GenBank - which will then become the primary, authoritative instances. The files here are held as part of the PeanutBase, LegumeInfo, and LegumeFederation projects. 

source: "https://peanutbase.org/data/"

synopsis: Genome assembly 2 for Arachis hypogaea, cultivar Tifrunner. This version has structural changes relative to assembly 1.

scientific_name: Arachis hypogaea

taxid: 3818

bioproject: PRJNA291488

scientific_name_abbrev: arahy

genotype:
  - Tifrunner

description: "Genome assembly for Arachis hypogaea cultivar Tifrunner. This version is essentially the same as Tifrunner version 1 (arahy.Tifrunner.gnm1.KYV3.genome_main.fna) at the basepair level, but has several large structural rearrangements, on the basis of HiC assessments. The largest changes are: a translocation of ~8 Mbp in the pericentromere of A02; several rearrangements in the pericentromere of A03; a swap in the telomeric regions of A06 and B06; inversion of a small scaffold from the distal end of A08; inversion of a telomeric region in B05; other small changes in telomeric regions of several pseudomolecules: B10, B09, A08."

original_file_creation_date: "2019-03-01"

local_file_creation_date: "2019-05-01"

publication_doi: 10.1038/s41588-019-0405-z

dataset_release_date: "2019-05-01"

publication_title: The genome sequence of segmental allotetraploid peanut Arachis hypogaea

contributors: "The International Peanut Genome Initiative; lead assembly group Jeremy Schmutz, Jerry Jenkins, Jane Grimwood; project leads David Bertioli; Soraya Bertioli; Brian Schleffler; Scott Jackson; Peggy Ozias-Akins; HiC assessments and corrections: Melanie Pham, Olga Dudchenko; Erez Lieberman Aiden lab"

data_curators: Ethalinda Cannon, Steven Cannon, Jerry Jenkins

public_access_level: public

license: Open

keywords: peanut, Arachis hypogaea, Tifrunner