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# filename in this repository: description
arahy.Tifrunner.gnm2.J5K5.genome_main_softmasked.fna.gz: Main genome assembly, consisting of pseudomolecules plus remaining unplaced scaffolds (softmasked)
arahy.Tifrunner.gnm2.J5K5.info_HiC_assembly.txt: HiC assembly file, describing scaffold/contig changes relative to gnm1
arahy.Tifrunner.gnm2.J5K5.info_nucmer_coords: coordinates files from nucmer comparisons, at 100% identity, between gnm1 and gnm2 
arahy.Tifrunner.gnm2.J5K5.info_nucmer_plots: plots from nucmer comparisons, at 100% identity, between gnm1 and gnm2
arahy.Tifrunner.gnm2.J5K5.seqid_map.tsv.gz: Map (hash) file of old/new chromosome and scaffold IDs
arahy.Tifrunner.gnm2.J5K5.genome_main.fna.gz: Primary genome assembly